CaUC06G114410 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G114410
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr06: 9929596 .. 9931305 (+)
RNA-Seq Expression	CaUC06G114410
Synteny	CaUC06G114410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACTTTGAAACACACTGCAAAGCTTTCTAATTTCTTTAAATTTCAATTAGCAAAATCCAATAGTAATGGTGCTTTGGGCCAAAAAGCCTTCATCTCCTCTTACCCTACACTTTCAAAAGTCAGTATATACTTATCCATATACTCTTATTCTTCTTCTTTATCGTTCTTTCATCAATCAATTTGTGCTTTCAGATTTGTTATCAATATTAGTGAAAATCATCTCTTAATTTTATTTTCCTTTGTATTTTCATTTTCTGGGTTTTAGTGATTTTCTTATTGTGATGCCTTTGGCTATAGTGATTCTTTCCTTAGGTCGAATTAATATTTTTCTTTTTTTTTTTAAAAAAAAAAAAAAAAACTTGTGAATGCTTTATCTTGGATTGCAAAATTTTATTTTCTTTGTCTTTTCATTCTTCTTGGACCAAATGAGGTTTGATTAAATAAAAAGATATGTGTAGATATGTGTTTAAATCATATGAATTTTTGGATGTATTGAGAGTTTTGTAATTGATAAGAAAAATGTTTGGAAATGGCAGTCAAAGGATGAAGAGACAGTGGATGCATGTATAAAGACTAAAGAAGCAGCAGAATCAGTGAAGGAATGTGCAAAAGAAGTGAGAGAAACAACTGAATTCCTTAGAGACACTGTAGCTTCCACTGCCAAATGTGTAAGCCCAATTAATTCAAGATTCAATCTCCCCTTTCACTTATATTTATTTCATTCTATTTAAATTGAAATATCAATGAATCTTATAAATTAAAAAACCTTCCAAAAAGATTTGGTTTAAGGTATGGGTTCCATCTCAAAATCAATTGACAAATGGGAGAAGAAATCTATTTATGTTAAAAAGTGATTTGAACCAGTAATTTAGTGGGGTTAAATAAAATTAGTACTATTTATTCAAAATTAAATAAATGTTTAATTTTCATTTTAAAACACAGTTTTTACACTATTAAGATTGATTCTAATGATTTTGAAAATGAGAATAGTGATTTTAAACAATTCCCAAACATGCTCTCATATATATATATTTTTTTTTTATCACACTGTAAAAGTGATTTTGATTTTGAATATTCATTAATGTTTGATTTTTATAATGGTTTTAGAATCATCAAATTACTAAATTAGATCTCTCAAATAATGGTTATTATCATTGGGAGACCTCACAATCCTTATCAAATACATGGGTTGACCCTTTTGGAGGGAATTTCATGTCTATCAGATATGGAATTAGAGACAACAAATCTAAAGGTAGTTAAAAACTAACAATAATAAACTAACCAAAGAGGTATCTTCAAGGGACATTATGAAGATTACAAATATGTTTTACCCACATTTGTTCGTTTTCTTTATTTGTAAGTTCAACCAATGCATAACTGAGATATGAAACTATGGACACTAGAGAGATGATGATTTGATGATGATTTGCGTCTTATATATCCATTCACTTATGCATTAGTTTGTCTGTTTTAGACTTTTTTGGTTGGTTGGGATTTGACATCTTGAGAAATTTAATTGGAGGTATGATGTGATTTATAGGTATCAAAAATGACAAAGGAAGTGACAGAAAAGGTATCTGATACAGCAGAAAAGATAACAAAAACAGCAGAAAACATAACAGAGAAAGCAAAGGATACAGTTACAGGAGCATGGGGAACTGCAAAGAACACTACTGAAATTATCAAAGATTTCATTGATAAGTAA

mRNA sequence

ATGTCAACTTTGAAACACACTGCAAAGCTTTCTAATTTCTTTAAATTTCAATTAGCAAAATCCAATAGTAATGGTGCTTTGGGCCAAAAAGCCTTCATCTCCTCTTACCCTACACTTTCAAAATCAAAGGATGAAGAGACAGTGGATGCATGTATAAAGACTAAAGAAGCAGCAGAATCAGTGAAGGAATGTGCAAAAGAAGTGAGAGAAACAACTGAATTCCTTAGAGACACTGTAGCTTCCACTGCCAAATGTGTATCAAAAATGACAAAGGAAGTGACAGAAAAGGTATCTGATACAGCAGAAAAGATAACAAAAACAGCAGAAAACATAACAGAGAAAGCAAAGGATACAGTTACAGGAGCATGGGGAACTGCAAAGAACACTACTGAAATTATCAAAGATTTCATTGATAAGTAA

Coding sequence (CDS)

ATGTCAACTTTGAAACACACTGCAAAGCTTTCTAATTTCTTTAAATTTCAATTAGCAAAATCCAATAGTAATGGTGCTTTGGGCCAAAAAGCCTTCATCTCCTCTTACCCTACACTTTCAAAATCAAAGGATGAAGAGACAGTGGATGCATGTATAAAGACTAAAGAAGCAGCAGAATCAGTGAAGGAATGTGCAAAAGAAGTGAGAGAAACAACTGAATTCCTTAGAGACACTGTAGCTTCCACTGCCAAATGTGTATCAAAAATGACAAAGGAAGTGACAGAAAAGGTATCTGATACAGCAGAAAAGATAACAAAAACAGCAGAAAACATAACAGAGAAAGCAAAGGATACAGTTACAGGAGCATGGGGAACTGCAAAGAACACTACTGAAATTATCAAAGATTTCATTGATAAGTAA

Protein sequence

MSTLKHTAKLSNFFKFQLAKSNSNGALGQKAFISSYPTLSKSKDEETVDACIKTKEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDTVTGAWGTAKNTTEIIKDFIDK

Homology

[Close]

BLAST of CaUC06G114410 vs. NCBI nr
Match: XP_022138632.1 (uncharacterized protein LOC111009748 [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 3.8e-48
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNGALGQKAFISSYPTLSKSK--DEETVDACIKTKEAA 60
           MSTLKHTAKLS +    L    SN + G KAFISSYPTLSKSK  DEETVDAC+KTKEAA
Sbjct: 1   MSTLKHTAKLSKY----LFTPKSNASFGHKAFISSYPTLSKSKTTDEETVDACVKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+VKE A+EVRET+EFL+DTVASTAKCVSKMTKEVT KVS+TAEKITKTAENITEKAKDT
Sbjct: 61  EAVKESAREVRETSEFLKDTVASTAKCVSKMTKEVTGKVSETAEKITKTAENITEKAKDT 120

Query: 121 VTGAWGTAKNTTEIIKDFIDK 140
           V+GAWGTAKNTT IIKDFIDK
Sbjct: 121 VSGAWGTAKNTTGIIKDFIDK 137

[Close]

BLAST of CaUC06G114410 vs. NCBI nr
Match: XP_015887495.1 (uncharacterized protein LOC107422546 [Ziziphus jujuba])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNGALGQKAFI--SSYPTLSKSKDEETVDACIKTKEAA 60
           MSTLK TAK+S FF     K NSN     KA +  ++ P     KD++  D C KTKEAA
Sbjct: 1   MSTLKLTAKISKFFPKTTPKCNSN----HKALLTTATRPLQFFKKDKDVADTCKKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+V++ AKEVRET EF+RDTV +TAK V+KMTKE T+KVS+       TA N TEKAK T
Sbjct: 61  EAVEQGAKEVRETCEFMRDTVETTAKKVTKMTKEATDKVSE-------TAGNFTEKAKGT 120

Query: 121 VTGAWGTAKNTTEIIKD 136
           V+GA G AKN TEIIKD
Sbjct: 121 VSGALGMAKNATEIIKD 126

[Close]

BLAST of CaUC06G114410 vs. NCBI nr
Match: RXH78485.1 (hypothetical protein DVH24_002003 [Malus domestica])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNG----ALGQKAF--ISSYPTLSKSKDEETVDACIKT 60
           MS++K   KLS +    L K+ +N     +L  + F  + + P  SK +D+E  DAC KT
Sbjct: 1   MSSMKLVTKLSTYL---LGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDE-ADACAKT 60

Query: 61  KEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEK 120
           KEAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T K
Sbjct: 61  KEAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTNK 120

Query: 121 AKDTVTGAWGTAKNTTEIIKD 136
            K TV+GAWG AKNTTEIIKD
Sbjct: 121 TKGTVSGAWGVAKNTTEIIKD 130

[Close]

BLAST of CaUC06G114410 vs. NCBI nr
Match: XP_008391440.2 (uncharacterized protein LOC103453660 [Malus domestica])

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-20
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNG----ALGQKAF--ISSYPTLSKSKDEETVDACIKT 60
           MS++K   KLS +    L K+ +N     +L  + F  + + P  SK +D+E  DAC KT
Sbjct: 1   MSSMKLITKLSTYL---LGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDE-ADACAKT 60

Query: 61  KEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEK 120
           KEAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T K
Sbjct: 61  KEAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTNK 120

Query: 121 AKDTVTGAWGTAKNTTEIIKD 136
            K TV+GAWG AKNTTEIIKD
Sbjct: 121 TKGTVSGAWGMAKNTTEIIKD 130

[Close]

BLAST of CaUC06G114410 vs. NCBI nr
Match: TQD94454.1 (hypothetical protein C1H46_019944 [Malus baccata])

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-20
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNG----ALGQKAF--ISSYPTLSKSKDEETVDACIKT 60
           MS++K   KLS +    L K+ +N     +L  + F  + + P  SK +D+E  DAC KT
Sbjct: 1   MSSMKLITKLSTYL---LGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDE-ADACAKT 60

Query: 61  KEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEK 120
           KEAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T+K
Sbjct: 61  KEAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTDK 120

Query: 121 AKDTVTGAWGTAKNTTEIIKD 136
            K TV+ AWG AKNTTEIIKD
Sbjct: 121 TKGTVSSAWGVAKNTTEIIKD 130

[Close]

BLAST of CaUC06G114410 vs. ExPASy TrEMBL
Match: A0A6J1CBN9 (uncharacterized protein LOC111009748 OS=Momordica charantia OX=3673 GN=LOC111009748 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNGALGQKAFISSYPTLSKSK--DEETVDACIKTKEAA 60
           MSTLKHTAKLS +    L    SN + G KAFISSYPTLSKSK  DEETVDAC+KTKEAA
Sbjct: 1   MSTLKHTAKLSKY----LFTPKSNASFGHKAFISSYPTLSKSKTTDEETVDACVKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+VKE A+EVRET+EFL+DTVASTAKCVSKMTKEVT KVS+TAEKITKTAENITEKAKDT
Sbjct: 61  EAVKESAREVRETSEFLKDTVASTAKCVSKMTKEVTGKVSETAEKITKTAENITEKAKDT 120

Query: 121 VTGAWGTAKNTTEIIKDFIDK 140
           V+GAWGTAKNTT IIKDFIDK
Sbjct: 121 VSGAWGTAKNTTGIIKDFIDK 137

[Close]

BLAST of CaUC06G114410 vs. ExPASy TrEMBL
Match: A0A6P4A219 (uncharacterized protein LOC107422546 OS=Ziziphus jujuba OX=326968 GN=LOC107422546 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNGALGQKAFI--SSYPTLSKSKDEETVDACIKTKEAA 60
           MSTLK TAK+S FF     K NSN     KA +  ++ P     KD++  D C KTKEAA
Sbjct: 1   MSTLKLTAKISKFFPKTTPKCNSN----HKALLTTATRPLQFFKKDKDVADTCKKTKEAA 60

Query: 61  ESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKDT 120
           E+V++ AKEVRET EF+RDTV +TAK V+KMTKE T+KVS+       TA N TEKAK T
Sbjct: 61  EAVEQGAKEVRETCEFMRDTVETTAKKVTKMTKEATDKVSE-------TAGNFTEKAKGT 120

Query: 121 VTGAWGTAKNTTEIIKD 136
           V+GA G AKN TEIIKD
Sbjct: 121 VSGALGMAKNATEIIKD 126

[Close]

BLAST of CaUC06G114410 vs. ExPASy TrEMBL
Match: A0A498I8V5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002003 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.5e-21
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNG----ALGQKAF--ISSYPTLSKSKDEETVDACIKT 60
           MS++K   KLS +    L K+ +N     +L  + F  + + P  SK +D+E  DAC KT
Sbjct: 1   MSSMKLVTKLSTYL---LGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDE-ADACAKT 60

Query: 61  KEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEK 120
           KEAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T K
Sbjct: 61  KEAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTNK 120

Query: 121 AKDTVTGAWGTAKNTTEIIKD 136
            K TV+GAWG AKNTTEIIKD
Sbjct: 121 TKGTVSGAWGVAKNTTEIIKD 130

[Close]

BLAST of CaUC06G114410 vs. ExPASy TrEMBL
Match: A0A540M6S8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_019944 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQLAKSNSNG----ALGQKAF--ISSYPTLSKSKDEETVDACIKT 60
           MS++K   KLS +    L K+ +N     +L  + F  + + P  SK +D+E  DAC KT
Sbjct: 1   MSSMKLITKLSTYL---LGKTITNNGVMTSLSTRGFVIVPTRPMQSKKEDDE-ADACAKT 60

Query: 61  KEAAESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEK 120
           KEAA++VK+ AKEVR+T EF+RDTV +TAK ++KM KE TEKV       T+TAE +T+K
Sbjct: 61  KEAADAVKDGAKEVRQTCEFMRDTVETTAKSMNKMAKETTEKV-------TETAETLTDK 120

Query: 121 AKDTVTGAWGTAKNTTEIIKD 136
            K TV+ AWG AKNTTEIIKD
Sbjct: 121 TKGTVSSAWGVAKNTTEIIKD 130

[Close]

BLAST of CaUC06G114410 vs. ExPASy TrEMBL
Match: A0A6J5TG39 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS973 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 1   MSTLKHTAKLSNFFKFQ-LAKSNSNGALGQKAFI--SSYPTLSKSKDEETVDACIKTKEA 60
           MS+LK  AKLS     + +    +  +L  + F+  ++ P  SK +D+E  DAC KTKEA
Sbjct: 4   MSSLKLMAKLSAALPTKTITDRGALTSLSTRVFVTAATRPLQSKKEDDE-ADACEKTKEA 63

Query: 61  AESVKECAKEVRETTEFLRDTVASTAKCVSKMTKEVTEKVSDTAEKITKTAENITEKAKD 120
           A+SVK+ AKEVR T EF+RDT+  T K ++KM K       DT EKI++TA+NIT+K K 
Sbjct: 64  ADSVKDGAKEVRHTCEFMRDTIEKTTKTMTKMAK-------DTTEKISETADNITDKTKG 123

Query: 121 TVTGAWGTAKNTTEIIKD 136
           TV+GAWG AKNTTEIIKD
Sbjct: 124 TVSGAWGVAKNTTEIIKD 133

[Close]

BLAST of CaUC06G114410 vs. TAIR 10
Match: AT1G04670.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-18
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 30  KAFISSYPTLSKSKDEETVDACIKTKEAAESVKECAKEVRETTEFLRDTVASTAKCVSKM 89
           + F+S+ P   + K+E   + C K KEAAE+VKE AK+V+ETTE+++D  ++TA  V+KM
Sbjct: 24  RTFVSASPRPLQGKEE--AEQCQKVKEAAEAVKEGAKQVKETTEYIQDVASTTAGRVTKM 83

Query: 90  TKEVTEKVSDTAEKITKTAENITEKAKDTVTGAWGTAKNTTEIIKDFI 138
           TK+VTEKV       T+T + ITEKAK +V+G  GTAKN T+IIK+ I
Sbjct: 84  TKDVTEKV-------TETTDTITEKAKGSVSGVLGTAKNATDIIKNKI 122

The following BLAST results are available for this feature:

BLAST of CaUC06G114410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138632.1	3.8e-48	81.56	uncharacterized protein LOC111009748 [Momordica charantia]	[more]
XP_015887495.1	2.1e-22	56.93	uncharacterized protein LOC107422546 [Ziziphus jujuba]	[more]
RXH78485.1	2.0e-20	51.77	hypothetical protein DVH24_002003 [Malus domestica]	[more]
XP_008391440.2	3.3e-20	51.77	uncharacterized protein LOC103453660 [Malus domestica]	[more]
TQD94454.1	7.4e-20	51.06	hypothetical protein C1H46_019944 [Malus baccata]	[more]

BLAST of CaUC06G114410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G114410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBN9	1.8e-48	81.56	uncharacterized protein LOC111009748 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6P4A219	1.0e-22	56.93	uncharacterized protein LOC107422546 OS=Ziziphus jujuba OX=326968 GN=LOC10742254...	[more]
A0A498I8V5	9.5e-21	51.77	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002003 PE=4 SV=1	[more]
A0A540M6S8	3.6e-20	51.06	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_019944 PE=4 SV=1	[more]
A0A6J5TG39	4.7e-20	51.45	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS973 PE=4 SV=...	[more]

BLAST of CaUC06G114410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04670.1	4.3e-18	50.93	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 2; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 34..139 e-value: 1.4E-6 score: 30.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G114410.1	CaUC06G114410.1	mRNA