CaUC06G113520 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCAGAAAAACTAGGAAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGGCAATAAAGGAAGATGATTATTCAGACAATTTCACCAATATTAAACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTCCAAAAATAGCATCTTTTTCTCCTTCTTCTTCTTCTCTTCAAAGCAACCAAGTAATTGGTTCATCCACTTTCAATAATATCCCCTTTTTTGGGCCTCCTTTGGGTATGTCTCAACTGAATTATCAAGCTTCGCCTTCTATCCCCCATGGCTACTTCCAACAACTTGGAGATTTTAATATGAACCTTTGGGGGTCAGATTTGAGCCTACAAATTGGACCAACTAAGGGGAGGAGGCAACTTTGGAATGGTGATGGTGTAGATTTGGAGCTTCGACTTGGTAATCATCCATGA ATGGATTCAGAAAAACTAGGAAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGGCAATAAAGGAAGATGATTATTCAGACAATTTCACCAATATTAAACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTCCAAAAATAGCATCTTTTTCTCCTTCTTCTTCTTCTCTTCAAAGCAACCAAGTAATTGGTTCATCCACTTTCAATAATATCCCCTTTTTTGGGCCTCCTTTGGGTATGTCTCAACTGAATTATCAAGCTTCGCCTTCTATCCCCCATGGCTACTTCCAACAACTTGGAGATTTTAATATGAACCTTTGGGGGTCAGATTTGAGCCTACAAATTGGACCAACTAAGGGGAGGAGGCAACTTTGGAATGGTGATGGTGTAGATTTGGAGCTTCGACTTGGTAATCATCCATGA ATGGATTCAGAAAAACTAGGAAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGGCAATAAAGGAAGATGATTATTCAGACAATTTCACCAATATTAAACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTCCAAAAATAGCATCTTTTTCTCCTTCTTCTTCTTCTCTTCAAAGCAACCAAGTAATTGGTTCATCCACTTTCAATAATATCCCCTTTTTTGGGCCTCCTTTGGGTATGTCTCAACTGAATTATCAAGCTTCGCCTTCTATCCCCCATGGCTACTTCCAACAACTTGGAGATTTTAATATGAACCTTTGGGGGTCAGATTTGAGCCTACAAATTGGACCAACTAAGGGGAGGAGGCAACTTTGGAATGGTGATGGTGTAGATTTGGAGCTTCGACTTGGTAATCATCCATGA MDSEKLGSSCSESSSELEEQSEAIKEDDYSDNFTNIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKIASFSPSSSSLQSNQVIGSSTFNNIPFFGPPLGMSQLNYQASPSIPHGYFQQLGDFNMNLWGSDLSLQIGPTKGRRQLWNGDGVDLELRLGNHP Homology
BLAST of CaUC06G113520 vs. NCBI nr
Match: XP_038875027.1 (zinc finger protein 6-like [Benincasa hispida]) HSP 1 Score: 274.6 bits (701), Expect = 5.5e-70 Identity = 143/170 (84.12%), Postives = 153/170 (90.00%), Query Frame = 0
BLAST of CaUC06G113520 vs. NCBI nr
Match: KGN61620.1 (hypothetical protein Csa_006775 [Cucumis sativus]) HSP 1 Score: 213.8 bits (543), Expect = 1.1e-51 Identity = 122/173 (70.52%), Postives = 134/173 (77.46%), Query Frame = 0
BLAST of CaUC06G113520 vs. NCBI nr
Match: XP_023514446.1 (probable transcriptional regulator RABBIT EARS [Cucurbita pepo subsp. pepo]) HSP 1 Score: 187.2 bits (474), Expect = 1.2e-43 Identity = 105/166 (63.25%), Postives = 125/166 (75.30%), Query Frame = 0
BLAST of CaUC06G113520 vs. NCBI nr
Match: XP_022930490.1 (probable transcriptional regulator RABBIT EARS [Cucurbita moschata]) HSP 1 Score: 186.4 bits (472), Expect = 2.0e-43 Identity = 105/166 (63.25%), Postives = 125/166 (75.30%), Query Frame = 0
BLAST of CaUC06G113520 vs. NCBI nr
Match: KAG6593852.1 (Transcriptional regulator TAC1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026184.1 Transcriptional regulator TAC1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 185.7 bits (470), Expect = 3.3e-43 Identity = 104/166 (62.65%), Postives = 125/166 (75.30%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07 Identity = 37/78 (47.44%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07 Identity = 33/69 (47.83%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06 Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 1.7e-05 Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 1.7e-05 Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy TrEMBL
Match: A0A0A0LI91 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G190770 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 5.6e-52 Identity = 122/173 (70.52%), Postives = 134/173 (77.46%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy TrEMBL
Match: A0A6J1EX07 (probable transcriptional regulator RABBIT EARS OS=Cucurbita moschata OX=3662 GN=LOC111436930 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 9.5e-44 Identity = 105/166 (63.25%), Postives = 125/166 (75.30%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy TrEMBL
Match: A0A6J1KKB3 (zinc finger protein GIS-like OS=Cucurbita maxima OX=3661 GN=LOC111494795 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.3e-42 Identity = 104/166 (62.65%), Postives = 124/166 (74.70%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy TrEMBL
Match: A0A6J1CE07 (transcriptional regulator TAC1-like OS=Momordica charantia OX=3673 GN=LOC111009842 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36 Identity = 102/173 (58.96%), Postives = 123/173 (71.10%), Query Frame = 0
BLAST of CaUC06G113520 vs. ExPASy TrEMBL
Match: A0A5N5FEY0 (Transcriptional regulator SUPERMAN-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_010063 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 4.9e-24 Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 0
BLAST of CaUC06G113520 vs. TAIR 10
Match: AT3G23140.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 74.3 bits (181), Expect = 1.0e-13 Identity = 58/166 (34.94%), Postives = 77/166 (46.39%), Query Frame = 0
BLAST of CaUC06G113520 vs. TAIR 10
Match: AT5G43540.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 67.8 bits (164), Expect = 9.5e-12 Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0
BLAST of CaUC06G113520 vs. TAIR 10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 58.5 bits (140), Expect = 5.8e-09 Identity = 58/197 (29.44%), Postives = 84/197 (42.64%), Query Frame = 0
BLAST of CaUC06G113520 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08 Identity = 37/78 (47.44%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of CaUC06G113520 vs. TAIR 10
Match: AT3G09290.1 (telomerase activator1 ) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08 Identity = 33/69 (47.83%), Postives = 39/69 (56.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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