CaUC06G113280 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G113280
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr06: 8128205 .. 8128732 (+)
RNA-Seq Expression	CaUC06G113280
Synteny	CaUC06G113280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATTCGAAATGCCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA

mRNA sequence

ATGATGCCATGTGAATCGCTAGAAACATGTGAAAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA

Coding sequence (CDS)

ATGATGCCATGTGAATCGCTAGAAACATGTGAAAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA

Protein sequence

MMPCESLETCENRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK

Homology

[Close]

BLAST of CaUC06G113280 vs. NCBI nr
Match: KAB2041250.1 (hypothetical protein ES319_D02G135700v1 [Gossypium barbadense])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 11  ENRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI 70
           +NRS SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI
Sbjct: 7   KNRSGSNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI 66

Query: 71  DTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           DTY ILWK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 67  DTYGILWKTVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 105

[Close]

BLAST of CaUC06G113280 vs. NCBI nr
Match: RZC88934.1 (hypothetical protein C5167_030630 [Papaver somniferum])

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 14  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY 73
           SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTY
Sbjct: 105 SESNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTY 164

Query: 74  RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 165 RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 200

[Close]

BLAST of CaUC06G113280 vs. NCBI nr
Match: RZC92595.1 (hypothetical protein C5167_029533 [Papaver somniferum])

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 14  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY 73
           SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTY
Sbjct: 76  SESNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTY 135

Query: 74  RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 136 RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 171

[Close]

BLAST of CaUC06G113280 vs. NCBI nr
Match: TYG46624.1 (hypothetical protein ES288_D11G270400v1 [Gossypium darwinii])

HSP 1 Score: 190.3 bits (482), Expect = 8.9e-45
Identity = 93/98 (94.90%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 12  NRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID 71
           NRS SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID
Sbjct: 20  NRSGSNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID 79

Query: 72  TYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           TY I WK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 80  TYGIPWKTVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 117

[Close]

BLAST of CaUC06G113280 vs. NCBI nr
Match: RZC60151.1 (hypothetical protein C5167_021922 [Papaver somniferum])

HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 14  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY 73
           SESNSNDSKH FLHYFGNPRTQS+GYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTY
Sbjct: 10  SESNSNDSKHFFLHYFGNPRTQSHGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTY 69

Query: 74  RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           RILWK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 70  RILWKVVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 105

[Close]

BLAST of CaUC06G113280 vs. ExPASy TrEMBL
Match: A0A5J5SCK7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D02G135700v1 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.7e-46
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 11  ENRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI 70
           +NRS SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI
Sbjct: 7   KNRSGSNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI 66

Query: 71  DTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           DTY ILWK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 67  DTYGILWKTVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 105

[Close]

BLAST of CaUC06G113280 vs. ExPASy TrEMBL
Match: A0A5D2AP26 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D11G270400v1 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.3e-45
Identity = 93/98 (94.90%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 12  NRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID 71
           NRS SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID
Sbjct: 20  NRSGSNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID 79

Query: 72  TYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           TY I WK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 80  TYGIPWKTVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 117

[Close]

BLAST of CaUC06G113280 vs. ExPASy TrEMBL
Match: A0A4Y7JJM5 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_021922 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.6e-45
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 14  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY 73
           SESNSNDSKH FLHYFGNPRTQS+GYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTY
Sbjct: 10  SESNSNDSKHFFLHYFGNPRTQSHGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTY 69

Query: 74  RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           RILWK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 70  RILWKVVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 105

[Close]

BLAST of CaUC06G113280 vs. ExPASy TrEMBL
Match: A0A5D2LXE1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G150700v1 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 11  ENRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI 70
           E  S SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI
Sbjct: 7   EVSSGSNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLI 66

Query: 71  DTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
           DTY ILWK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 67  DTYGILWKTVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 105

[Close]

BLAST of CaUC06G113280 vs. ExPASy TrEMBL
Match: A0A5D2SNU1 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D11G062300v1 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 14  SESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY 73
           S SNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY
Sbjct: 4   SGSNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTY 63

Query: 74  RILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 110
            ILWK VFDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 64  GILWKTVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 99

The following BLAST results are available for this feature:

BLAST of CaUC06G113280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB2041250.1	1.4e-45	94.95	hypothetical protein ES319_D02G135700v1 [Gossypium barbadense]	[more]
RZC88934.1	1.8e-45	97.92	hypothetical protein C5167_030630 [Papaver somniferum]	[more]
RZC92595.1	1.8e-45	97.92	hypothetical protein C5167_029533 [Papaver somniferum]	[more]
TYG46624.1	8.9e-45	94.90	hypothetical protein ES288_D11G270400v1 [Gossypium darwinii]	[more]
RZC60151.1	2.0e-44	95.83	hypothetical protein C5167_021922 [Papaver somniferum]	[more]

BLAST of CaUC06G113280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G113280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5SCK7	6.7e-46	94.95	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D02G135700v1 PE...	[more]
A0A5D2AP26	4.3e-45	94.90	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D11G270400v1 PE=...	[more]
A0A4Y7JJM5	9.6e-45	95.83	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_021922 PE=4 SV=1	[more]
A0A5D2LXE1	1.3e-44	93.94	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G150700v1 P...	[more]
A0A5D2SNU1	1.3e-44	95.83	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D11G062300v1 P...	[more]

BLAST of CaUC06G113280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G113280.1	CaUC06G113280.1	mRNA