CaUC06G112770 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G112770
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Location	Ciama_Chr06: 7517017 .. 7519693 (-)
RNA-Seq Expression	CaUC06G112770
Synteny	CaUC06G112770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTGTAGCTAAATGTATCCACGTTCCATTTACATTATTTCGAGATTTTTGTATGTATGCCTCAAATCGGATTGCCCTAACGTAAAAATACTCAAGATTTGAAAACAATAAAAATTAACCTGTATTTACATGGATAGCATTTAGATAGTAGTGGCTACTTTATTTGCCACTCTCACCAGCAATCCTCCATTCTCTCTTTGTTCTTCAAATAATGGAAGCAAAATAGATCCCGGTACTTGCAATATACAGTTGGAAGAAGGAGAAGCGCAGCAGTGAGAGAGAGAGGGAAAATGGGAATGTGAGTGCGAGCAAGAAAGAGGGAGAAAGTAAGAAGCATGATGTAAGTAAGTAAGTTAGAATTCACTGTTTTCAAAATATTTGTGCTCTTGGTTCTCTCTCTCATCATCAAACAATGGAAGCCCAATAGATCCTTGTACTTGCAATCAAATTATCAACCCTTGGAAGAAAACTAGAAGCACCAGCATGAGTAAGGAGTGCGATGAAGAAAGTAACGAAGTTTTCAAAATCTGAGTCACCCCAAAGTAACAGTACAGAACACATATGAGGTTATCCCAACAAACAAACAAACAAAAAATAAAAAACTTTGATTATATCGATAAAGCTGGCTCCTTGCCCAAATCCCAATTCGCTTTGTACCATAAAATCGACACCTAACCGCTCTCGGCATAGGCATAAGCATAACCACAAGCTGAGAACTCGAAGTTCATTTCAATTACCCAACTTATCCTCTTTCAATTCCTTTCCCCGATTAGGTTTCAAAACGTTTCTCTTCTCCGGATTTTGCTTCCGCCGATTCTCTTCGCTGGTTCGTAACTTCGTTCACTGCCGGCACGACGTTAAGAATTAGGTATGGACTACGATGCCAGCTCCTTCTCCGTTTCTTTATGCACACTCACACACATGGCTTCAGGTCGACGGCTGCCTCACTTCTGTTTAATTTCTGATTGAATTCATTGATGGTGTTTGTTTCTGTCGCAAATTCGGCATTCAATTCATCAATAGAATCTACACCAGGCTCAATAGCTCTTAAGTTAGAAAGGATTTCTATGATGAACCCACGATTAAACAGAATAATGCCTCATTTCCTGCAGGGGAATAGCTGGGGATGAAGCCGGGGTATAGCCGCTCAACTTGGCTGGAGTAACTACAAGAACGAAGATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACAACTATTTCAACATTGGATAGAAGCGTAAGAAGGGAAAATGGGCGTAAGTAACATCACCTGTAGCCATAAGTTAACTTCTGTGTTGAATCTGAAACTTTCTCAAATATGCACATTCTTTTTTCTCAGCTGTTCTCATTTATAATACGTCTCGTTCTCGTAGAAGTGAAGATTCTTTTGATGCTTGAAATGTTTAAAATGTATTGCAGCAGCCATATTCCTGAATGCTGTATCATTTATACATACTATAGGTTAAAACTCATTTTTAATTAGTTACAATTTAGTTATTTTAGTTTGCAACAATTTCTCATGTTAATTAGTAAGTTATATTATAAAACTTGAGACTTAATTTTTGAAAAGATCTAAAGTGGTAGGAACTAAATTGCTACTAATTTGAAACTATAGAGCTCAAATTATTTCTTGTTAAAAGACTAAATCATTACACATTAAAGTTCATAGATTAAATTGTTACATGTAGAAAAGTTAAGGACGAGTATTTTTTAACCTATTTACGATTCTCTTGTTCTGAATCTGAATGCACTCATACATAAGCTTCATTCATATAGTCTTTCTTACTTGACCTTCTTATGCAACATAACAGATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCATTTCTCACATTTAACAATGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAACCAAAACAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGCGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGTATAACAAGTGACAAACAAATAATGTTAGTTCATGATGGTCATAATGAATTTATAACAACATTTTCACTCACTCACATGCAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCTGGCTTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAGCTGATGAGCATTTAGATGAACATTTTTGTTAATATAACATTTCACCTCTAGTTTTGTGAGGTATGGAGCTACTTTTGTTGCTATTCTCCACCTTATTGATCATACAAAGGAATTTATGTTGAATGGATTGAAAAAGAGAAGAATCAAAACTGAGGATACATGGCTGCCCCTGTTTCTCACTTCACTTGTATATCGGCTTTTGAACTACAATGAAAGATATCAAATTTTGTCATAG

mRNA sequence

ATGATTTTTTGGAAGAAGGAGAAGCGCAGCAGTGAGAGAGAGAGGGAAAATGGGAATGTGAGTGCGAGCAAGAAAGAGGGAGAAAGTAAGAAGCATGATGTTTCAAAACGTTTCTCTTCTCCGGATTTTGCTTCCGCCGATTCTCTTCGCTGGTTCGTAACTTCGTTCACTGCCGGCACGACGTTAAGAATTAGGGGAATAGCTGGGGATGAAGCCGGGCCGCTCAACTTGGCTGGAGTAACTACAAGAACGAAGATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACAACTATTTCAACATTGGATAGAAGCGTAAGAAGGGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCATTTCTCACATTTAACAATGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAACCAAAACAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGCGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCTGGCTTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATTCTTTTTTGTGAGGTATGGAGCTACTTTTGTTGCTATTCTCCACCTTATTGATCATACAAAGGAATTTATGTTGAATGGATTGAAAAAGAGAAGAATCAAAACTGAGGATACATGGCTGCCCCTGTTTCTCACTTCACTTGTATATCGGCTTTTGAACTACAATGAAAGATATCAAATTTTGTCATAG

Coding sequence (CDS)

ATGATTTTTTGGAAGAAGGAGAAGCGCAGCAGTGAGAGAGAGAGGGAAAATGGGAATGTGAGTGCGAGCAAGAAAGAGGGAGAAAGTAAGAAGCATGATGTTTCAAAACGTTTCTCTTCTCCGGATTTTGCTTCCGCCGATTCTCTTCGCTGGTTCGTAACTTCGTTCACTGCCGGCACGACGTTAAGAATTAGGGGAATAGCTGGGGATGAAGCCGGGCCGCTCAACTTGGCTGGAGTAACTACAAGAACGAAGATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACAACTATTTCAACATTGGATAGAAGCGTAAGAAGGGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCATTTCTCACATTTAACAATGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAACCAAAACAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGCGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCTGGCTTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATTCTTTTTTGTGAGGTATGGAGCTACTTTTGTTGCTATTCTCCACCTTATTGATCATACAAAGGAATTTATGTTGAATGGATTGAAAAAGAGAAGAATCAAAACTGAGGATACATGGCTGCCCCTGTTTCTCACTTCACTTGTATATCGGCTTTTGAACTACAATGAAAGATATCAAATTTTGTCATAG

Protein sequence

MIFWKKEKRSSERERENGNVSASKKEGESKKHDVSKRFSSPDFASADSLRWFVTSFTAGTTLRIRGIAGDEAGPLNLAGVTTRTKMAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEEFFFVRYGATFVAILHLIDHTKEFMLNGLKKRRIKTEDTWLPLFLTSLVYRLLNYNERYQILS

Homology

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BLAST of CaUC06G112770 vs. NCBI nr
Match: XP_038875361.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida] >XP_038875362.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 1.4e-94
Identity = 183/205 (89.27%), Postives = 195/205 (95.12%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           MAAFIQA ICPTTISTLDR+++ ENGHKLRSRSQVVLP QEVCRRHLMC+GMSLV FLT 
Sbjct: 1   MAAFIQANICPTTISTLDRNLKSENGHKLRSRSQVVLPSQEVCRRHLMCSGMSLVVFLTC 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TPS A+AEETPND EEEDNGVIGTIKSIFDPNE+TK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSARAEETPND-EEEDNGVIGTIKSIFDPNEKTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQ+TVV+EESY VLEKAI+SLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQRTVVREESYVVLEKAIKSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPEAVKSD+L+DLDKAEEF
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEEF 204

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BLAST of CaUC06G112770 vs. NCBI nr
Match: XP_023549108.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023549109.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023549110.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.2 bits (905), Expect = 2.6e-93
Identity = 182/205 (88.78%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           M AFIQAKICP TISTLDR +  ENGHKLRSRSQVVLP QE+CRR+L+CNGMSLVAFLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRNLLCNGMSLVAFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TP LA+AEE PND EEE+NGVIGTIKSIFDPNERTK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDNEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPE VKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEF 204

[Close]

BLAST of CaUC06G112770 vs. NCBI nr
Match: XP_022958810.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958811.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958812.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >XP_022958813.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata] >KAG6574982.1 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352.8 bits (904), Expect = 3.3e-93
Identity = 182/205 (88.78%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           M AFIQAKICP TISTLDR +  ENGHKLRSRSQVVLP QE+CRR L+CNGMS VAFLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TP LA+AEE PNDKEEE+NGVIGTIKSIFDPNERTK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPE VKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEF 204

[Close]

BLAST of CaUC06G112770 vs. NCBI nr
Match: XP_022138383.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138384.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138385.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia] >XP_022138386.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia])

HSP 1 Score: 350.5 bits (898), Expect = 1.7e-92
Identity = 178/205 (86.83%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           MAAF+QAKICP T S+LDR  R ENG KLRSRSQVVLP QEVCRR L+CNGMSLV FL F
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN S P LA+AEETPNDK+EEDNGV+G IKSIFDPNERTK+GKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPEAVKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEF 205

[Close]

BLAST of CaUC06G112770 vs. NCBI nr
Match: XP_023006140.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima] >XP_023006141.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima] >XP_023006142.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 348.6 bits (893), Expect = 6.3e-92
Identity = 180/205 (87.80%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           M AFIQAKICP TIST DR +  ENGHKLRS SQVVLP QE+CRR L+CNGMSLVAFLTF
Sbjct: 1   MTAFIQAKICPATISTFDR-ISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TP LA+AEETPN KEEE+NGVIGTIKSIFDPNERTK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPE VKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEF 204

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BLAST of CaUC06G112770 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.5e-48
Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 154 AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDP 213
           AQA E   +K +E  GV+G  K++FDPNERTK+GK LPKAYLKSAREVVKT+RESL+E+P
Sbjct: 65  AQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENP 124

Query: 214 KDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLP 273
           KD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESY  LE  IR+LA FY+KAGPSAPLP
Sbjct: 125 KDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLP 184

Query: 274 EAVKSDLLNDLDKAEEF 291
           + VK+++L+DL+KAEEF
Sbjct: 185 DEVKTEILDDLNKAEEF 198

[Close]

BLAST of CaUC06G112770 vs. ExPASy TrEMBL
Match: A0A6J1H448 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459969 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-93
Identity = 182/205 (88.78%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           M AFIQAKICP TISTLDR +  ENGHKLRSRSQVVLP QE+CRR L+CNGMS VAFLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TP LA+AEE PNDKEEE+NGVIGTIKSIFDPNERTK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPE VKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEF 204

[Close]

BLAST of CaUC06G112770 vs. ExPASy TrEMBL
Match: A0A6J1CCV0 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009571 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 8.0e-93
Identity = 178/205 (86.83%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           MAAF+QAKICP T S+LDR  R ENG KLRSRSQVVLP QEVCRR L+CNGMSLV FL F
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN S P LA+AEETPNDK+EEDNGV+G IKSIFDPNERTK+GKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESYA LEKAIRSLA FYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPEAVKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEF 205

[Close]

BLAST of CaUC06G112770 vs. ExPASy TrEMBL
Match: A0A6J1KWY8 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498971 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92
Identity = 180/205 (87.80%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           M AFIQAKICP TIST DR +  ENGHKLRS SQVVLP QE+CRR L+CNGMSLVAFLTF
Sbjct: 1   MTAFIQAKICPATISTFDR-ISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TP LA+AEETPN KEEE+NGVIGTIKSIFDPNERTK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESYAVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEEF 291
           AGPSAPLPE VKSD+LNDLDKAEEF
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEF 204

[Close]

BLAST of CaUC06G112770 vs. ExPASy TrEMBL
Match: A0A1S3BG68 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489666 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 2.0e-91
Identity = 178/203 (87.68%), Postives = 187/203 (92.12%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           MAAFIQAKICP TISTLDRS+  ENG KL SRSQV LP QE+CRRHL+ NGMSLV FLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TPS A AEE PN+ EEEDNGVIGTIKSIFDPNERTK+GKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAE 289
           AGPSAPLPEAVKSD+L+DLDKAE
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAE 203

[Close]

BLAST of CaUC06G112770 vs. ExPASy TrEMBL
Match: A0A0A0K400 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 4.4e-91
Identity = 178/204 (87.25%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 86  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTF 145
           MAAFI AKICPTTISTLDRS+  E G KL SRS+VVLP QEVCRRHL+ NGMSLV FLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 146 NNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTL 205
           NN  TPS AQAEE PN+ EEEDNGVIGTIKSIFDPNE+TK+GK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 206 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAK 265
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QTVVQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 266 AGPSAPLPEAVKSDLLNDLDKAEE 290
           AGPSAPLPEAVKSD+L+DLDK EE
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEE 204

[Close]

BLAST of CaUC06G112770 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 193.4 bits (490), Expect = 3.2e-49
Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 154 AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDP 213
           AQA E   +K +E  GV+G  K++FDPNERTK+GK LPKAYLKSAREVVKT+RESL+E+P
Sbjct: 65  AQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENP 124

Query: 214 KDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLP 273
           KD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESY  LE  IR+LA FY+KAGPSAPLP
Sbjct: 125 KDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLP 184

Query: 274 EAVKSDLLNDLDKAEEF 291
           + VK+++L+DL+KAEEF
Sbjct: 185 DEVKTEILDDLNKAEEF 198

[Close]

BLAST of CaUC06G112770 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 43.9 bits (102), Expect = 3.1e-04
Identity = 25/100 (25.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 194 YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG----QQTVVQEESY 253
           Y+K    V+  +R +L     D       ADA  E +R+  ++W+     ++ ++ + S+
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTD----PNVADAVAE-LREASNSWVAKYRKEKALLGKASF 133

Query: 254 AVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEE 290
             +  A+ +++G Y   GP+AP+P   K+ +L +++ AE+
Sbjct: 134 RDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEK 168

The following BLAST results are available for this feature:

BLAST of CaUC06G112770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875361.1	1.4e-94	89.27	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincas...	[more]
XP_023549108.1	2.6e-93	88.78	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit...	[more]
XP_022958810.1	3.3e-93	88.78	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit...	[more]
XP_022138383.1	1.7e-92	86.83	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordic...	[more]
XP_023006140.1	6.3e-92	87.80	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbit...	[more]

BLAST of CaUC06G112770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVZ9	4.5e-48	71.53	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of CaUC06G112770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H448	1.6e-93	88.78	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb...	[more]
A0A6J1CCV0	8.0e-93	86.83	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momord...	[more]
A0A6J1KWY8	3.1e-92	87.80	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb...	[more]
A0A1S3BG68	2.0e-91	87.68	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumi...	[more]
A0A0A0K400	4.4e-91	87.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1	[more]

BLAST of CaUC06G112770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05385.1	3.2e-49	71.53	photosystem II 11 kDa protein-related	[more]
AT1G03600.1	3.1e-04	25.00	photosystem II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 129..290 e-value: 4.4E-47 score: 159.9
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 108..290
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 165..291 score: 20.970278
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 184..292 e-value: 6.8E-29 score: 102.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR34041:SF3	PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC	coord: 108..290

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G112770.1	CaUC06G112770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II