CaUC06G110690 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G110690
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	tRNA pseudouridine synthase
Location	Ciama_Chr06: 4996564 .. 4999137 (-)
RNA-Seq Expression	CaUC06G110690
Synteny	CaUC06G110690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGGGATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCCATTTCCCTTCCCCTTTCACCAAGCATTCCATTTCCCAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCCGGTAACAACAATACTTCCCTAATCTCTCAGTTCCTCTTTTCATATTGGTGCTTTAATTTTGACGATGTTGATGAGGTCGTTGCCTTGTCTTGATTCTTCAAAAGAATGTGGAGGATTCCTCTTATATCACAGAGTCCCCTTTCCCCAGCTTCAAATGGCGATTGCTCATCGCTTATGACGGTACCCGATACGCAGGTCCAAATTTCTTTTTCTTATCTCTAATTGTCTATTCAGACGAATGAATTGAACGATTTTGTGTCCATATACCAGCGTTATCTTTTTAGGTTAACAGTAATTCTTTATGGCTTAAGCTTTTGAGGTTAGTTGTTGTTGCATGCTGGATGTCTTTTTCATCATCAGTATGAATTTCACTTCAGGATCACCCTAATTGGAGACTCGTTTAAAAGTACTTAGCCTGCTTTTATTATGAGTTAACTGAGAGAAGTTTGTGCTTGCTACTACAATTCTGGATCCTCTTGGTGTTAGATAATATAATATTAAATTTATCTTCACCTATAAGTTCAAGTTTTTGGGCCAATCAGTGATTTAAGATAGTATTAAAGCAGGTGGTCTATTCAAACCCTAGTATTGATTTCCATGTGTTAGGTCTTCTATATAGTTCAAACCCACAAATGAGGGGAGTGTTAGATAATATAATATTAAATTTACCTTCCCATGAACTTGAGCTTACTTGGTCTCAAGTTTGATAAAATAATTTTGAATATGTGATACTAAACTAGGCTGGCAATATCAGCGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGATTGGAGCAACAAAGCTTGAAAGGAAGGATCTCCATTTAGTTGGTGCAAGCAGAACAGATAAAGGAGTTCATGCCTGGGGTCAGGTCTGATGTGCTTTTATGGAGTCGGGTTAAAAAAACACATCATTGGAATACAATGCTTGCTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCTCACTTTATTACGCCATTTAACTACGATAGCTTGGAAAGCGTTCATGCTGCACTGAATGGTCTTCTTCCTGTGGATATAAGAGTTCGAGAGATCAGTCCCGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATAGTGCCATCTTGGATCCATTTCAGCGTTGCTACACTTACCATTGTGTTTATAAACTCAACTATGCAGCCATGAGAGAAGCTGCAAATTATTTCGTTGGGAAGCATGATTTTTCTGCTTTTACAAATGCAGCACATAATGATCGAGTGGTAAATCCAGTGAAGGACATTTTGCGTTTTGATGTCATAGAAATGGTAAAGTCTTAAGGTTCTTCAGTCATTGATTTGTTTGGTTTAATTACAACTTTAGTTCATGAGCTTTGAAATTTATGTCTATTTGGTCATCTTTAAAAAGTGTTAATAGGTTGTTTAACTTTCGGTCTCGTGCATTATACGACCCTAAACTTTAAAAAGTATCCAAAGGTTCTTAAACTTTCAATTTCATGTTCATTGGATCTCTTAATTTTCAATTTTTTGTTTATCCTTGGCCTATTTGATTCTTTTTAAAATTCATGGATTTATAGGCATAAAATTGAAAGTTTAAGGTTACATTTGACATAAAATTCAAAATTATATATTATAGACCAATTAATTTTTTAAAATTCGAATATGTTAGAGACCTATTAGACACAAAATTGAAAGTTCAAAGTCCTACTTGACATTTTAACCTTATGGGATCTATCAGACACACGTGAAAGTTCAAAAATCTATTGGACACTTTCAAAAGTTCAGGACTAAATAGATACAAACCTTAATGTTTATGGACCAAATTGATAATCTACCGGTTTGTTTGTTTTTTTTTCTCCTATGGCACGTCTGCTTCTCATGAGTGATTCCGGTTTCAGCTTTATACAAAACCTATGAGATTAAATGCTTTCTTTTGTTCAGGGACCTCTTGTGCAGATAGAAGTTGAGGGTTCTGGGTTCTTATATAGACAAGTTCGGAATATGGTAATTATTTTTGTTACATCCATCTTTTCAGTCAAAAGTCCATTGTCTGATTATTTATTTATTTTACTTATGCTGGTTGCTAAAACGGCTTTATTAGTTGAAAGTAGACTTCCTGGAAGCAGAGATATAAGTTTGTAAAATCGGTTTCATGCAACTCAGGAACTGTAAGCTTTTTTCTTTACTGCTTTTGCAGGTTGGCTTGTTGGTTCAAATTGGAAAGGAAGCAATTCCTCCTGATGTTGTTCCTAAGATTTTGGCTTCTCGAGATCGCAGAGAGCTTGCGAAGTATGCTTCAGGTGTTCCTCCACAGGGGCTCTGTCTTGTGAGTGTTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTCTGGTAGGAGTCGCAGTGTGAGCAAATGTAAACTCCCTTTTTATTGA

mRNA sequence

AAGAGGGATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCCATTTCCCTTCCCCTTTCACCAAGCATTCCATTTCCCAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCCGGTAACAACAATACTTCCCTAATCTCTCAGTTCCTCTTTTCATATTGGTGCTTTAATTTTGACGATGTTGATGAGGTCGTTGCCTTAATGTGGAGGATTCCTCTTATATCACAGAGTCCCCTTTCCCCAGCTTCAAATGGCGATTGCTCATCGCTTATGACGGTACCCGATACGCAGGTTAACAGTAATTCTTTATGGCTTAAGCTTTTGAGGTTAGTTGTTGTTGCATGCTGGATGTCTTTTTCATCATCATTGGTGCAAGCAGAACAGATAAAGGAGTTCATGCCTGGGGTCAGGTCTGATGTGCTTTTATGGAGTCGGGTTAAAAAAACACATCATTGGAATACAATGCTTGCTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCTCACTTTATTACGCCATTTAACTACGATAGCTTGGAAAGCGTTCATGCTGCACTGAATGGTCTTCTTCCTGTGGATATAAGAGTTCGAGAGATCAGTCCCGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATAGTGCCATCTTGGATCCATTTCAGCGTTGCTACACTTACCATTGTGTTTATAAACTCAACTATGCAGCCATGAGAGAAGCTGCAAATTATTTCGTTGGGAAGCATGATTTTTCTGCTTTTACAAATGCAGCACATAATGATCGAGTGGTAAATCCAGTGAAGGACATTTTGCGTTTTGATGTCATAGAAATGGGACCTCTTGTGCAGATAGAAGTTGAGGGTTCTGGGTTCTTATATAGACAAGTTCGGAATATGACTTCCTGGAAGCAGAGATATAAGTTTGTAAAATCGGTTTCATGCAACTCAGGAACTGTTGGCTTGTTGGTTCAAATTGGAAAGGAAGCAATTCCTCCTGATGTTGTTCCTAAGATTTTGGCTTCTCGAGATCGCAGAGAGCTTGCGAAGTATGCTTCAGGTGTTCCTCCACAGGGGCTCTGTCTTGTGAGTGTTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTCTGGTAGGAGTCGCAGTGTGAGCAAATGTAAACTCCCTTTTTATTGA

Coding sequence (CDS)

AAGAGGGATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCCATTTCCCTTCCCCTTTCACCAAGCATTCCATTTCCCAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCCGGTAACAACAATACTTCCCTAATCTCTCAGTTCCTCTTTTCATATTGGTGCTTTAATTTTGACGATGTTGATGAGGTCGTTGCCTTAATGTGGAGGATTCCTCTTATATCACAGAGTCCCCTTTCCCCAGCTTCAAATGGCGATTGCTCATCGCTTATGACGGTACCCGATACGCAGGTTAACAGTAATTCTTTATGGCTTAAGCTTTTGAGGTTAGTTGTTGTTGCATGCTGGATGTCTTTTTCATCATCATTGGTGCAAGCAGAACAGATAAAGGAGTTCATGCCTGGGGTCAGGTCTGATGTGCTTTTATGGAGTCGGGTTAAAAAAACACATCATTGGAATACAATGCTTGCTGTTGCTTACAACAAGTTGAGGTTTCAGGTGGCTCACTTTATTACGCCATTTAACTACGATAGCTTGGAAAGCGTTCATGCTGCACTGAATGGTCTTCTTCCTGTGGATATAAGAGTTCGAGAGATCAGTCCCGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATAGTGCCATCTTGGATCCATTTCAGCGTTGCTACACTTACCATTGTGTTTATAAACTCAACTATGCAGCCATGAGAGAAGCTGCAAATTATTTCGTTGGGAAGCATGATTTTTCTGCTTTTACAAATGCAGCACATAATGATCGAGTGGTAAATCCAGTGAAGGACATTTTGCGTTTTGATGTCATAGAAATGGGACCTCTTGTGCAGATAGAAGTTGAGGGTTCTGGGTTCTTATATAGACAAGTTCGGAATATGACTTCCTGGAAGCAGAGATATAAGTTTGTAAAATCGGTTTCATGCAACTCAGGAACTGTTGGCTTGTTGGTTCAAATTGGAAAGGAAGCAATTCCTCCTGATGTTGTTCCTAAGATTTTGGCTTCTCGAGATCGCAGAGAGCTTGCGAAGTATGCTTCAGGTGTTCCTCCACAGGGGCTCTGTCTTGTGAGTGTTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTCTGGTAGGAGTCGCAGTGTGAGCAAATGTAAACTCCCTTTTTATTGA

Protein sequence

KRDEVLGGGFACSSSHFPSPFTKHSISQWRFIFLQSWIPGNNNTSLISQFLFSYWCFNFDDVDEVVALMWRIPLISQSPLSPASNGDCSSLMTVPDTQVNSNSLWLKLLRLVVVACWMSFSSSLVQAEQIKEFMPGVRSDVLLWSRVKKTHHWNTMLAVAYNKLRFQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVIEMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY

Homology

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BLAST of CaUC06G110690 vs. NCBI nr
Match: XP_008458280.1 (PREDICTED: tRNA pseudouridine synthase A 1 isoform X2 [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 2.6e-121
Identity = 239/341 (70.09%), Postives = 260/341 (76.25%), Query Frame = 0


Query: 69  MWRIPLISQSPLSPASNGDCSSLMTVPDTQVNSNSLWLKLLRLVVVACWMSFSSSLVQAE 128
           M RIPLISQSPLSPASNG CSSLMTV D Q +  +          + C +    +L+ A 
Sbjct: 13  MRRIPLISQSPLSPASNGGCSSLMTVLDMQRSPPT----------IQCLI--EEALIGAT 72

Query: 129 QIKEFMPGVRSDVLL--WSRVKK-THHWNTMLAVAYNKLRFQVAHFITPFNYDSLESVHA 188
           +++      R D+ L   SR  K  H W             QVAHF+TPFNYDSLESVHA
Sbjct: 73  KLE------RKDLHLVGASRTDKGVHAWG------------QVAHFVTPFNYDSLESVHA 132

Query: 189 ALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNY 248
           ALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  I+DPFQRCYTYHCVYKLNY
Sbjct: 133 ALNGLLPVDIRVREMSPAAPDFHARFSTLSKVYHYKIYNGTIMDPFQRCYTYHCVYKLNY 192

Query: 249 AAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVIEMGPLVQIEVEGSGFLYRQ 308
           AAM+EAANYFVGKHDFSAFTNAAHN+RVVNPVK I RFDVIEMG LVQ+EVEGSGFLYRQ
Sbjct: 193 AAMKEAANYFVGKHDFSAFTNAAHNNRVVNPVKVIFRFDVIEMGALVQLEVEGSGFLYRQ 252

Query: 309 VRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVP 368
           VRNM                   VGLLVQIGKEA+PP+VVPKILASRDR+ELAKYASGVP
Sbjct: 253 VRNM-------------------VGLLVQIGKEALPPEVVPKILASRDRKELAKYASGVP 304

Query: 369 PQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 407
           PQGLCLVS+NYKEDHLKLPSDCPGTS GRSRSV KCK+PFY
Sbjct: 313 PQGLCLVSINYKEDHLKLPSDCPGTSLGRSRSVGKCKVPFY 304

[Close]

BLAST of CaUC06G110690 vs. NCBI nr
Match: XP_038875516.1 (tRNA pseudouridine synthase A 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 426.4 bits (1095), Expect = 2.8e-115
Identity = 210/240 (87.50%), Postives = 216/240 (90.00%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPA PDFHARFSTLSKVYHYKIYN A
Sbjct: 114 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAAPDFHARFSTLSKVYHYKIYNGA 173

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           ILDPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAFTNAAHNDRVVNPVK I RFDVI
Sbjct: 174 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFTNAAHNDRVVNPVKVIFRFDVI 233

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           +MGPLVQ+EVEGSGFLYRQVRNM                   VGLLVQIGKEAIPPDVVP
Sbjct: 234 DMGPLVQLEVEGSGFLYRQVRNM-------------------VGLLVQIGKEAIPPDVVP 293

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILAS+DRRELAKYASGVPPQGLCLVS+NYKEDHLKLPSDCPGTS GR+RSVSKCKLPFY
Sbjct: 294 KILASQDRRELAKYASGVPPQGLCLVSINYKEDHLKLPSDCPGTSVGRNRSVSKCKLPFY 334

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BLAST of CaUC06G110690 vs. NCBI nr
Match: XP_004138518.2 (uncharacterized protein LOC101205797 [Cucumis sativus] >KGN45627.2 hypothetical protein Csa_005280 [Cucumis sativus])

HSP 1 Score: 418.3 bits (1074), Expect = 7.5e-113
Identity = 204/240 (85.00%), Postives = 215/240 (89.58%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPAVPDFHARFSTLSKVYHYKIY+  
Sbjct: 135 QVAHFVTPFNYDSLESVHAALNGLLPVDIRVREMSPAVPDFHARFSTLSKVYHYKIYSGT 194

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           I+DPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAFTNAAHNDRVVNPVK I RFDVI
Sbjct: 195 IMDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFTNAAHNDRVVNPVKVIFRFDVI 254

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           EMG LVQ+EVEGSGFLYRQVRNM                   VGLLVQIGKEA+PP+VVP
Sbjct: 255 EMGALVQLEVEGSGFLYRQVRNM-------------------VGLLVQIGKEALPPEVVP 314

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILASRDRRELAKYASGVPPQGLCLVS+NYKEDHLKLPSDCPGTS GR+RSVSKCK+PFY
Sbjct: 315 KILASRDRRELAKYASGVPPQGLCLVSINYKEDHLKLPSDCPGTSFGRTRSVSKCKVPFY 355

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BLAST of CaUC06G110690 vs. NCBI nr
Match: XP_008458279.1 (PREDICTED: tRNA pseudouridine synthase A 1 isoform X1 [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 6.4e-112
Identity = 202/240 (84.17%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  
Sbjct: 114 QVAHFVTPFNYDSLESVHAALNGLLPVDIRVREMSPAAPDFHARFSTLSKVYHYKIYNGT 173

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           I+DPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAFTNAAHN+RVVNPVK I RFDVI
Sbjct: 174 IMDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFTNAAHNNRVVNPVKVIFRFDVI 233

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           EMG LVQ+EVEGSGFLYRQVRNM                   VGLLVQIGKEA+PP+VVP
Sbjct: 234 EMGALVQLEVEGSGFLYRQVRNM-------------------VGLLVQIGKEALPPEVVP 293

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILASRDR+ELAKYASGVPPQGLCLVS+NYKEDHLKLPSDCPGTS GRSRSV KCK+PFY
Sbjct: 294 KILASRDRKELAKYASGVPPQGLCLVSINYKEDHLKLPSDCPGTSLGRSRSVGKCKVPFY 334

[Close]

BLAST of CaUC06G110690 vs. NCBI nr
Match: XP_038875517.1 (tRNA pseudouridine synthase A 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 406.0 bits (1042), Expect = 3.9e-109
Identity = 203/240 (84.58%), Postives = 208/240 (86.67%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPA PDFHARFSTLSKVYHYKIYN A
Sbjct: 114 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAAPDFHARFSTLSKVYHYKIYNGA 173

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           ILDPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAFTNAAHNDRVVNPVK        
Sbjct: 174 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFTNAAHNDRVVNPVK-------- 233

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
             GPLVQ+EVEGSGFLYRQVRNM                   VGLLVQIGKEAIPPDVVP
Sbjct: 234 --GPLVQLEVEGSGFLYRQVRNM-------------------VGLLVQIGKEAIPPDVVP 293

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILAS+DRRELAKYASGVPPQGLCLVS+NYKEDHLKLPSDCPGTS GR+RSVSKCKLPFY
Sbjct: 294 KILASQDRRELAKYASGVPPQGLCLVSINYKEDHLKLPSDCPGTSVGRNRSVSKCKLPFY 324

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BLAST of CaUC06G110690 vs. ExPASy Swiss-Prot
Match: Q6MEE7 (tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=truA1 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-32
Identity = 75/215 (34.88%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHF    +Y  L  +H +LNGLLP DIR++ + P  P FH+++S + K YHY ++ + 
Sbjct: 61  QVAHFHFQ-DYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNK 120

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVV-NPVKDILRFDV 286
           ++DPFQR Y++H   K++   +++AA  F G HDF++F N AH      NPV+ + R D+
Sbjct: 121 VMDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDI 180

Query: 287 IEMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVV 346
                 +++E EG GFLY+ VRN+                   VG L+ +       + +
Sbjct: 181 KPNEGGLRLEFEGDGFLYKMVRNI-------------------VGTLMDVASHKRAIEEI 240

Query: 347 PKILASRDRRELAKYASGVPPQGLCLVSVNYKEDH 381
            +I A+++RR+ +  A   PP+GL L+ V Y+ ++
Sbjct: 241 NQIFAAKNRRQASLAA---PPEGLFLIQVFYENEN 252

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BLAST of CaUC06G110690 vs. ExPASy Swiss-Prot
Match: B1I1B5 (tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=truA PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.2e-30
Identity = 80/212 (37.74%), Postives = 109/212 (51.42%), Query Frame = 0


Query: 165 RFQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYN 224
           R QV +F+T       E + AALNG+LP DI   +      DFHAR+S ++K Y Y +YN
Sbjct: 60  RGQVVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYN 119

Query: 225 SAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFD 284
             +  PFQR Y+ H    L+  AMR AA + +G+HDFS F  A     V + V+ + R D
Sbjct: 120 HPVRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGR--PVQSAVRTLTRAD 179

Query: 285 VIEMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDV 344
           +    PLV++     GFLY  VR M                    G L+++G E + P+ 
Sbjct: 180 IEAQAPLVRLVFRADGFLYNMVRIM-------------------AGTLLEVGLERLDPEA 239

Query: 345 VPKILASRDRRELAKYASGVPPQGLCLVSVNY 377
           +P I+AS DR   A+    VPP GLCL  V Y
Sbjct: 240 LPDIIASGDR---ARAGPTVPPHGLCLEEVEY 247

[Close]

BLAST of CaUC06G110690 vs. ExPASy Swiss-Prot
Match: A4J151 (tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain MI-1) OX=349161 GN=truA PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-27
Identity = 74/196 (37.76%), Postives = 104/196 (53.06%), Query Frame = 0


Query: 181 ESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCV 240
           E    ALN LLP DI+V +      DFHARFS ++K Y Y IY+  ++ PF R Y YH  
Sbjct: 76  EKAPLALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHRVMSPFHRYYCYHEP 135

Query: 241 YKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVIEMGPLVQIEVEGSG 300
            +L+  AM+E A Y +G +DF +F   A    V + ++ I R D+IE  P++ + + G+G
Sbjct: 136 RRLDVNAMQEGAAYLLGTYDFKSF--QAQGTPVKDTIRTIYRADIIEDAPVINLYLRGNG 195

Query: 301 FLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVPKILASRDRRELAKY 360
           FLY  VR +T                   G L+ IG   I P+ + KI+ S++R      
Sbjct: 196 FLYNMVRIIT-------------------GTLLNIGFGKIKPEDMVKIIESKNRTLAGTT 247

Query: 361 ASGVPPQGLCLVSVNY 377
           A   PPQGLCL+ V Y
Sbjct: 256 A---PPQGLCLMEVEY 247

[Close]

BLAST of CaUC06G110690 vs. ExPASy Swiss-Prot
Match: Q8R7Y7 (tRNA pseudouridine synthase A OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=truA PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.2e-26
Identity = 82/211 (38.86%), Postives = 105/211 (49.76%), Query Frame = 0


Query: 166 FQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNS 225
           +QVA+F T       E +  ALN +LP D+ V +       FHAR+S  SK Y Y I N 
Sbjct: 55  YQVANFKTKTKIPP-EKLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNR 114

Query: 226 AILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDV 285
               P  R Y +H  Y L+  AM++AA +F G HDFSAF   A  ++ VNPVK I    V
Sbjct: 115 QFPMPTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAF--KASGNKKVNPVKTIFDLTV 174

Query: 286 IEMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVV 345
            + G L++IEVE  GFLY  VR +                   VG LV +G   I    +
Sbjct: 175 EKEGDLIKIEVEADGFLYNMVRII-------------------VGTLVYVGLGKIKAGEI 234

Query: 346 PKILASRDRRELAKYASGVPPQGLCLVSVNY 377
           P I+ S+DR    K     PPQGL LV + Y
Sbjct: 235 PAIIESKDR---TKAGITAPPQGLYLVRIVY 240

[Close]

BLAST of CaUC06G110690 vs. ExPASy Swiss-Prot
Match: Q3A3B5 (tRNA pseudouridine synthase A OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=truA PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-25
Identity = 78/225 (34.67%), Postives = 112/225 (49.78%), Query Frame = 0


Query: 165 RFQVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYN 224
           R  VAHF+TP     + +    +N  LP  I VR+ +    DFHAR+S + K Y Y IY 
Sbjct: 58  RGMVAHFVTPQPL-PMAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYR 117

Query: 225 SAILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFD 284
           S +  P    +++H    L+  AMR+AA   VG+HDF+AF  +    R    V+++   D
Sbjct: 118 SPVRSPLACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTT--VREVFSVD 177

Query: 285 VIEMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDV 344
           +++    V ++V GSGFL   VR M                   VG LV++G+ A PP+ 
Sbjct: 178 IVDAEEWVYVDVRGSGFLRNMVRIM-------------------VGTLVEVGRGARPPEE 237

Query: 345 VPKILASRDRRELAKYASGV--PPQGLCLVSVNYKEDHLKLPSDC 388
           V  +LA   R++     SG+  P QGLCL+ V Y       P DC
Sbjct: 238 VGAMLAGGCRKQ-----SGITAPAQGLCLMEVAY------APQDC 249

[Close]

BLAST of CaUC06G110690 vs. ExPASy TrEMBL
Match: A0A1S3C7H4 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 1.2e-121
Identity = 239/341 (70.09%), Postives = 260/341 (76.25%), Query Frame = 0


Query: 69  MWRIPLISQSPLSPASNGDCSSLMTVPDTQVNSNSLWLKLLRLVVVACWMSFSSSLVQAE 128
           M RIPLISQSPLSPASNG CSSLMTV D Q +  +          + C +    +L+ A 
Sbjct: 13  MRRIPLISQSPLSPASNGGCSSLMTVLDMQRSPPT----------IQCLI--EEALIGAT 72

Query: 129 QIKEFMPGVRSDVLL--WSRVKK-THHWNTMLAVAYNKLRFQVAHFITPFNYDSLESVHA 188
           +++      R D+ L   SR  K  H W             QVAHF+TPFNYDSLESVHA
Sbjct: 73  KLE------RKDLHLVGASRTDKGVHAWG------------QVAHFVTPFNYDSLESVHA 132

Query: 189 ALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNY 248
           ALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  I+DPFQRCYTYHCVYKLNY
Sbjct: 133 ALNGLLPVDIRVREMSPAAPDFHARFSTLSKVYHYKIYNGTIMDPFQRCYTYHCVYKLNY 192

Query: 249 AAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVIEMGPLVQIEVEGSGFLYRQ 308
           AAM+EAANYFVGKHDFSAFTNAAHN+RVVNPVK I RFDVIEMG LVQ+EVEGSGFLYRQ
Sbjct: 193 AAMKEAANYFVGKHDFSAFTNAAHNNRVVNPVKVIFRFDVIEMGALVQLEVEGSGFLYRQ 252

Query: 309 VRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVPKILASRDRRELAKYASGVP 368
           VRNM                   VGLLVQIGKEA+PP+VVPKILASRDR+ELAKYASGVP
Sbjct: 253 VRNM-------------------VGLLVQIGKEALPPEVVPKILASRDRKELAKYASGVP 304

Query: 369 PQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 407
           PQGLCLVS+NYKEDHLKLPSDCPGTS GRSRSV KCK+PFY
Sbjct: 313 PQGLCLVSINYKEDHLKLPSDCPGTSLGRSRSVGKCKVPFY 304

[Close]

BLAST of CaUC06G110690 vs. ExPASy TrEMBL
Match: A0A1S3C7L6 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 3.1e-112
Identity = 202/240 (84.17%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHF+TPFNYDSLESVHAALNGLLPVDIRVRE+SPA PDFHARFSTLSKVYHYKIYN  
Sbjct: 114 QVAHFVTPFNYDSLESVHAALNGLLPVDIRVREMSPAAPDFHARFSTLSKVYHYKIYNGT 173

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           I+DPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAFTNAAHN+RVVNPVK I RFDVI
Sbjct: 174 IMDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFTNAAHNNRVVNPVKVIFRFDVI 233

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           EMG LVQ+EVEGSGFLYRQVRNM                   VGLLVQIGKEA+PP+VVP
Sbjct: 234 EMGALVQLEVEGSGFLYRQVRNM-------------------VGLLVQIGKEALPPEVVP 293

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILASRDR+ELAKYASGVPPQGLCLVS+NYKEDHLKLPSDCPGTS GRSRSV KCK+PFY
Sbjct: 294 KILASRDRKELAKYASGVPPQGLCLVSINYKEDHLKLPSDCPGTSLGRSRSVGKCKVPFY 334

[Close]

BLAST of CaUC06G110690 vs. ExPASy TrEMBL
Match: A0A6J1L0L1 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108
Identity = 196/240 (81.67%), Postives = 206/240 (85.83%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHFITPFNYDSL+ +HAALNGLLP DIRVREISPAVPDFHARFSTLSKVYHYKIYN A
Sbjct: 113 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 172

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           ILDPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAF N AHNDRVVNPVK I RFDVI
Sbjct: 173 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 232

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           EMG L+Q+EVEGSGFLYRQVRNM                   V LL+QIGKEAIPPDVVP
Sbjct: 233 EMGALIQLEVEGSGFLYRQVRNM-------------------VALLLQIGKEAIPPDVVP 292

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILASRDR+ LAKY + +PPQGLCLV +NYKEDHLKLPSDCPGTS GRS SVSKCKLPFY
Sbjct: 293 KILASRDRKVLAKYTTCIPPQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 333

[Close]

BLAST of CaUC06G110690 vs. ExPASy TrEMBL
Match: A0A6J1L2M8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108
Identity = 196/240 (81.67%), Postives = 206/240 (85.83%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHFITPFNYDSL+ +HAALNGLLP DIRVREISPAVPDFHARFSTLSKVYHYKIYN A
Sbjct: 115 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDA 174

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           ILDPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAF N AHNDRVVNPVK I RFDVI
Sbjct: 175 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 234

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           EMG L+Q+EVEGSGFLYRQVRNM                   V LL+QIGKEAIPPDVVP
Sbjct: 235 EMGALIQLEVEGSGFLYRQVRNM-------------------VALLLQIGKEAIPPDVVP 294

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILASRDR+ LAKY + +PPQGLCLV +NYKEDHLKLPSDCPGTS GRS SVSKCKLPFY
Sbjct: 295 KILASRDRKVLAKYTTCIPPQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 335

[Close]

BLAST of CaUC06G110690 vs. ExPASy TrEMBL
Match: A0A6J1H621 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108
Identity = 194/240 (80.83%), Postives = 207/240 (86.25%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHFITPFNYDSL+ +HAALNGLLP DIRVRE+SPAVPDFHARFSTLSKVYHYKIYN A
Sbjct: 114 QVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDA 173

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
           ILDPFQRCYTYHCVYKLNYAAM+EAANYFVGKHDFSAF N AHNDRVVNPVK I RFDVI
Sbjct: 174 ILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVI 233

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           EMG L+Q+EVEGSGFLYRQVRNM                   V LL+QIGKEAIPPD+VP
Sbjct: 234 EMGALIQLEVEGSGFLYRQVRNM-------------------VALLLQIGKEAIPPDIVP 293

Query: 347 KILASRDRRELAKYASGVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPFY 406
           KILA+RDR+ELAKY + +PPQGLCLV +NYKEDHLKLPSDCPGTS GRS SVSKCKLPFY
Sbjct: 294 KILATRDRKELAKYTTCIPPQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 334

[Close]

BLAST of CaUC06G110690 vs. TAIR 10
Match: AT3G06950.1 (Pseudouridine synthase family protein )

HSP 1 Score: 317.4 bits (812), Expect = 1.7e-86
Identity = 159/241 (65.98%), Postives = 180/241 (74.69%), Query Frame = 0


Query: 167 QVAHFITPFNYDSLESVHAALNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSA 226
           QVAHF+TPFNY SL+S HAALNGLLP DIRVRE+S AVP+FHARFS  SKVY Y+IYN  
Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDT 161

Query: 227 ILDPFQRCYTYHCVYKLNYAAMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVI 286
            +DPFQR + YHC YKLN + MREAAN FVGKHDFSAF NA   D V +P+K I RFDVI
Sbjct: 162 FMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVI 221

Query: 287 EMGPLVQIEVEGSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVP 346
           +MG L+Q+EVEGSGFLYRQVRNM                   V LL+QIGKEA+  D+VP
Sbjct: 222 QMGSLLQLEVEGSGFLYRQVRNM-------------------VALLIQIGKEALDSDIVP 281

Query: 347 KILASRDRRELAKYAS-GVPPQGLCLVSVNYKEDHLKLPSDCPGTSSGRSRSVSKCKLPF 406
            IL ++DRR LAKY S    P GLCLVSV YKEDHLKLP DCP TSSGR  +++KCKLPF
Sbjct: 282 MILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTITKCKLPF 323

[Close]

BLAST of CaUC06G110690 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-07
Identity = 55/190 (28.95%), Postives = 73/190 (38.42%), Query Frame = 0


Query: 187 LNGLLPVDIRVREISPAVPDFHARFSTLSKVYHYKIYNSAILDPFQRCYTYHCVYKLNYA 246
           LN  LP DIRV   SPA  DFHARFS  ++ Y Y  +                   LN +
Sbjct: 191 LNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQ----------------NLNLS 250

Query: 247 AMREAANYFVGKHDFSAFTNAAHNDRVVNPVKDILRFDVIEMGP---------LVQIEVE 306
           AM  A   F+G+HDF  F        V N      R    E+ P         L    + 
Sbjct: 251 AMDFAGKKFIGEHDFRNFCKM----DVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMR 310

Query: 307 GSGFLYRQVRNMTSWKQRYKFVKSVSCNSGTVGLLVQIGKEAIPPDVVPKILASRDRREL 366
           GS FL+ Q+R M                   V +L  IG+     DV+  +L ++     
Sbjct: 311 GSAFLWHQIRCM-------------------VAVLFMIGQGVESVDVIDTLLDTKKTPRK 341

The following BLAST results are available for this feature:

BLAST of CaUC06G110690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458280.1	2.6e-121	70.09	PREDICTED: tRNA pseudouridine synthase A 1 isoform X2 [Cucumis melo]	[more]
XP_038875516.1	2.8e-115	87.50	tRNA pseudouridine synthase A 1 isoform X1 [Benincasa hispida]	[more]
XP_004138518.2	7.5e-113	85.00	uncharacterized protein LOC101205797 [Cucumis sativus] >KGN45627.2 hypothetical ...	[more]
XP_008458279.1	6.4e-112	84.17	PREDICTED: tRNA pseudouridine synthase A 1 isoform X1 [Cucumis melo]	[more]
XP_038875517.1	3.9e-109	84.58	tRNA pseudouridine synthase A 1 isoform X2 [Benincasa hispida]	[more]

BLAST of CaUC06G110690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6MEE7	4.0e-32	34.88	tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) OX=...	[more]
B1I1B5	2.2e-30	37.74	tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain MP104C) OX=477...	[more]
A4J151	1.3e-27	37.76	tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain MI-1) OX=3491...	[more]
Q8R7Y7	7.2e-26	38.86	tRNA pseudouridine synthase A OS=Caldanaerobacter subterraneus subsp. tengcongen...	[more]
Q3A3B5	2.1e-25	34.67	tRNA pseudouridine synthase A OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC...	[more]

BLAST of CaUC06G110690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C7H4	1.2e-121	70.09	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1	[more]
A0A1S3C7L6	3.1e-112	84.17	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1	[more]
A0A6J1L0L1	2.7e-108	81.67	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=...	[more]
A0A6J1L2M8	2.7e-108	81.67	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499282 PE=3 SV=...	[more]
A0A6J1H621	2.7e-108	80.83	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111460439 PE=3 S...	[more]

BLAST of CaUC06G110690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06950.1	1.7e-86	65.98	Pseudouridine synthase family protein	[more]
AT1G34150.1	1.2e-07	28.95	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 327..379 e-value: 2.8E-6 score: 29.1
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 214..313 e-value: 5.8E-26 score: 92.9
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 329..376 e-value: 5.2E-5 score: 23.7 coord: 251..310 e-value: 1.8E-13 score: 50.9
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 153..386
IPR001406	Pseudouridine synthase I, TruA	CDD	cd02570	PseudoU_synth_EcTruA	coord: 167..376 e-value: 2.02086E-73 score: 227.356
None	No IPR available	PANTHER	PTHR11142:SF0	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1	coord: 153..386
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 166..382

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G110690.1	CaUC06G110690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034196	acylglycerol transport
biological_process	GO:1990052	ER to chloroplast lipid transport
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008033	tRNA processing
biological_process	GO:0009451	RNA modification
molecular_function	GO:0070300	phosphatidic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity
molecular_function	GO:0009982	pseudouridine synthase activity