CaUC06G110560 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G110560
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Ciama_Chr06: 4841184 .. 4848008 (-)
RNA-Seq Expression	CaUC06G110560
Synteny	CaUC06G110560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGAATAGCACACAAAAGTGGTTATTGCCTTTAAAACCAAGAAAATTGAAACCCCAGAAGGCAGAAGTAGTGATCATAACACAATGTTCGTCTTCATGCTGGACGAAATCCACGAGTTCGTGGACGCCATCTCCATCCTGGCCGGACTTGACTATGTATTCGATCTCAAGTTCTCACCAAAAATGTTCTCCATAATGGTCAACCGCACACCTTCCTCTCGTTGCACTATAGCCCTTCAACTATTCCCTCCATTCTTCAACCAAGGATATTCTTGCCAACAACTTCACTACTCATGGATTTACATCAACCAGTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATCCACATCATGCCGACCTCACATTTCGCAGTGCCGATGGTTTGTTTAATTTTCTCCTCATTCTTGAATATATATATGTTCTTGCAAGTTCTTTAGTGTGTGACATTCAAATTATTGCTTTTAGGCCGTCTTCGTGCAGTTGATTTCCCAATGTATCTTTCGGACGAGTCGATGGATGTGGGTGAGTTCGATTTGGGAACTTTCGTCTCCTTCAGTTCACGAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGGTAAAAAAAAATTATACCCTTCTTCTCTTACCACATATTTATTTGAAAGAAAATGCATGGTCTTAAGTTTGAATTTTTTTTTTTTTTTTTTTTTTGGGTTATATTTCATTACAGTTATGGTCACACTCACGAATTCACATGTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGTATTTTTTTTTTTTTTTTTTGGGTTATATTTCATTACAGTTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGTATTTTTTTTTTTTTTTTTTGGGTTATATTTCATTACAGTTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGTATTTTTTTTTTTTTTTTTTGGGTTATATTTCATTACAGTTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGTATTTTTTTTTTTTTTTTTTGGGTTATATTTCATTACAGTTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGTATTTTTTTTTTTTTTTTTTGGGTTATATTTCATTACAGTTATGGTCACACTCACGAATTCACATGTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGTATTTTTTTTTTTTATTTTTTTATGGCCAAGATGGTTAATTAGACCATTAATTTCTGTAGGCAAAGTTTGAAGATAGCATAAAGTTTTTTTAAGAGTGAAACATATTTGAATTATAGATTTGTTTTGCATGAATTTAACATTCAAATATATATATATTTTTGAAAATATTCACAAGGCAAGATGGATCAGGAGGTGTACCGCTATATCTCTACTAGGTTGACACCCCCTAGCACCCTCATCATGCCCCAAGACCAAAAAAACGTTCAAATAAAATATTAATGTATTTGAAAACTAAGATTCCATGACATTTAAAAACTACCGCAACCATTTTTTGTGACAGTTAGTTTTAGTCATTAAATGACACACATTCAAGTATGAATATCAACGGCACTTTCTAAATAGAAAGATGTCCTTATGGCATTGGTAGAAAGATGTCCACTTGGCGACACTCATACATCTCAAAAGGGAGAAGATTGACCCTTATACAAGGGATACTTAGCAGTTTACCAACCTACTACTTATCTTTGTTCTGCGCTCCAAATGTCAGTTTGTAAGGTAATTGAGAGAAAAAATGAGGAATTTTTTGTGGGTTGGTTCGGATGACAGAGGGGGGTCTCATCTTGTTAGATGGGAAATCACCAGACCCAAAGAAGCTGGAGGGCTCGGTATTGATAGTGTGAAATTCTCAAATGAAACTCTTATGAGCAAATGGATTTGGAGATATCACAAGGAGCCTAATCAACTTTGGAGAAGACTCATTGACAGTAAATATGTGGTGATTTCACCGGGTGCTATCCCATCGAAATGTAAACATATCAGCTCAAAATCTCCATAGTTCAATATTGTAAAAATGGAGACCAATATTGGGAATCACATCCAGCGAAAAGTGAGAAATGGAGCTAATACCCTCTTTTGGTTCCATCAATGGACCAATCAAACCCCATTATATCAGAAACTCTCCAGATTTTTTCATTTAGCTATCAATCCCCTCATTACTGTCAGAGACGCTTGGAACACTACCAATAGTACCTAGGATCCACATTTTAGGTGATCTTTATTGCCCAGGGAGAGTCAAAACTGGACATTGCTATCCGCAAATTGGCAAACTCCAATCAACTATGCAGGGGTTGACATTACCTACTGGGCCCTTGAGAGCAGCGGTTGCTTTTCTGTGAAATCCATTAAAAATCTTTTGAATGGTGGTTTGCTCTCCTCAAATCCTCTCAATCTTGGCTTTCTTTACTTGGTCACTCAAGGGATCAACACCATCGACAAATATCAAAGTTGGCACCACTCTCTCAATCTCAATCCAAATTGGTGTGTCCTCTGCAGATCACATAACGAGACTATGGATCATCTTTTCTCCACTTGCAATTTCACAAAAGCCATTTGGTTCAATATCTACAAATTCATTGACCCAACCTCTCCTCATCCAACCAGCATCGACCCCCTTTTGGACAAGTTCCTTAACATCAACCCAAACTCACAAAGGAACATCCTCTTTAGCAACATATGTGGTGCAACCCTCTGGTGTCTCTGGCTTGAAAGAAACAACAGGACGTTTAAAAATGGTGCTAAGTCGCAAAGGCAGATTTGGGAGGATATCATCAGCCTGGCATCGCTATGGTGTAAAAAGTCAAATTTCTTTTGAATTATTCTACTACTTCTATACCTCTAAATTAGGAGGCCTTCCTCTAGTCTTTTGTACTCTCTCTTCGAGCTTCTTTCTAGCTCGTTTTTGTACTCCCTTTATCATCAATGAATTTTTTGGTCCTGGGGTGTGATGATGGTGCTAGAGTGGTGTCAACCTAGTTGAGATGCCTCAGTGCTTGCACTGATCCCTCTTGTTTTGTGAATATTTTCAAAAAAAAAAAAAAAAAACGGCAGTGTCTAAATAATAAGCTTTTTAATGACAATATATTATTGCCAATATTAAACTATTACTTACAATTACAAATTGTCACTACCAAGATTACTATGACAATTATCATTTTTAGTAATTGACTCAAGATTTCTATATTTTTGTAGTGATATGGTATTAACGACAGTGAAAATATGTCAATAAAACATATATATTGACTTTTTTGCATCATCACAGAAATGTTAATAAAGTCATTTCTTATTGTCAAAAATACCTTGGCCATGGCAATGATTTAAGTCAACAAATTAATGCCTTATGACGACACCTATATTTACTATCGCAGATGCATGAATGATGACACTTTTACATGGTCAATTAAATAAATCATAATTTGTTAAATGTCAAAGAAATGATCATAATGATAGTATATGTATTGTCTATATGGATTAAAGTAGTCTAAATATAAGAGTTGTTAAAGAAAGGCAAAATAAATAAAATTTTGTTGTGTAATTAATGTTATGCAGAGAAGACAATGCATTATTGGAGGAGTTGGGGGAAGTAACGAAATTGAATTTGTACTAAATTTCCAACCAACGGTAAATTTATGTAGCTTGGCACGTAGATCAGAAAGGGTTTGGTTATTCAAGTCAAATAATTCCCCCAAAGGTGTAATATGTGCCCCTTTTGGTTTGTGTGCTCGATTTTTGGTTTATTTTTCTCATAAACAATAACCTTAAAAGTCCTTTTTTTAAAAAAAAAAAAAAAAGAATTAGACCATTTATCGATTTGTGTAGGGTTCATGTTAATCTTCTCTGTATTGTTTCAATTTTATCAGATAACTCTAATAAAAGTCGTATATGATGATGCTATACTGTAATTTACATTCTTTTTCTCTCAATGGAAACTCAGAAGGCTATAGATTATAGCTATCTGATTATTGTATGGCTATATTTATATGGGTAAGCATGGTCAAATCTATTCTAACACCTTAATTTGGTGTGGATATTTTTTGGGACAGTTGCAAATATAGCAATCAGGTCTAAAATATTTGCAGATATAGCAACTTTAAAGGCTATCAATGATAAATTATATCAATAGTAGGGGTCTATCAATGATAGAGTCTATCACGGATAGATTTTGCTATATTTGTAATTTTTTTAAAAAATATTGTTATACACTTAATTATTATCTCTAAAAGTGCTACTTAACACAATTACCCTATTATTTTCCACAAATTGAACAAATCACAACAGCATTGTCCTTTTTTGGTCTGAAGTGTTGTTGGTATGAGATGTTGAATTTTGTTTATAAGAAGAAAAAAAGAATCTTCTTTCTTCGCCATGCATGGTGATAACATAGAAGATTGTGAAATATTAAATCAAGCCTACCAACAGTAAAATAATTTTGGAGAGTACCCCATGGGTAGGAAGGAGATCAATTATAGTAATTAATTGGAAGGCGTTCCTTTGGCGGCCTATATTTCCAGATCTCGAGACAATAAAAGAAGTCCTATATGACCAATCCAACAGAGTTGCTTCCCCTTTTGAGACAGACTACTACAAGAATCTTTGGAAATCCTATATTCCAAATAAAATTTAAGTTCTTTTTATGGACTATTTCCCACCAAAGCATCAAAACTATGGAGATTCTCCAGAGAAAACTTCCCAACTGGTGCACCCTATGCAAGAAACACGGTGAAAACATTGATCTTTATTTATCTCATGCAATACTGCATCCACCTTATGGGCTTTAATGGCATCTAAAATAGGGTGGCAACACAGAAACAACCCCATTCAATTCCTCTGCAAAAACCTATTCTCGATCAAGCATAATTCCAAAAAGAAGGTTATCATCTTCATCTTCAATATGATGGCTACAGCTTTATGGACTCTTTGGAGTGAAAGGAATAACCAAATATTCACAAATGCCCGCAGAAATGATACCAACCTTTAGGAAGACATTTGCACCCTCACTGGATGTTGGTCACACATAGCCCAAATTTTCAAAGAGTATGGCCCATCTACTATTACCATCAATCTTACTCCTTTTTGTAACAACTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGTTTGGGCTTAGCTCTAGCCCTTTATATGTTTGGGAATATTAATGAAAGGGAGATGATGAGGGTGCTAAGAATATAATGTGTCCACCTAGTGGAGATATTCAGGTGCACCCCTGACCCCAATGTATTTTTATTCAAAAAAAAAAAAAAAGAACTCTTTGCTCACTTCTCAAGAAGTGATATATTAGGTCTACGAGCTTAGACCCCATACTTGGTCATTTGAAGTGCCATATAATAGATTCAAGTCATTCCAACACCAAACTCTTTTATCATTTTCCATATAGAATAATTTCAATGAGTAACACTTTTAGGACTAATAATTAAGTGTATAATAGCAATTTTAAAGATTTGTAAATATAGCAAAATCTAGCGAAGATAGACTATATCGATCGTTGATAGATGTACTCCTATTAGTGATAGAGTCTATCATTGATAGACTACAAAAGTTGGATCTAAATTTTACTATATCTACAAATTATTTTTCATTATGCTATATCTACTATTACTTTGAGGTTAATGTGCTATATTTGCAATTGCATCTTTCACCTTTCCTACGTATATATAAATTGAAAACGAGACAAAGGGTTGATTAAACATAAAGTGAAACCCCACAAACCAAGAGTGATATCCACCATTATTGATGCTCCCATTTCCAATATCATGTTAAGTTTTTTACTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCACCGAGACATTCAATGGCGCACTCAAACTCAAATTTTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTGTATATTCTTGCAACAAACTTTTATGA

mRNA sequence

ATGGAAAGTAGTGATCATAACACAATGTTCGTCTTCATGCTGGACGAAATCCACGAGTTCGTGGACGCCATCTCCATCCTGGCCGGACTTGACTATGTATTCGATCTCAAGTTCTCACCAAAAATGTTCTCCATAATGGTCAACCGCACACCTTCCTCTCGTTGCACTATAGCCCTTCAACTATTCCCTCCATTCTTCAACCAAGGATATTCTTGCCAACAACTTCACTACTCATGGATTTACATCAACCAGTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATCCACATCATGCCGACCTCACATTTCGCAGTGCCGATGGTTTGTTTAATTTTCTCCTCATTCTTGAATATATATATTGTGTGACATTCAAATTATTGCTTTTAGGCCGTCTTCGTGCAGTTGATTTCCCAATGTATCTTTCGGACGAGTCGATGGATGTGGGTGAGTTCGATTTGGGAACTTTCGTCTCCTTCAGTTCACGAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGTTATGGTCACACTCACGAATTCACATGTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGTTATGGTCACAGTCACGAATTCACATTTCAATTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGTTATGGTCACATTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGTTATGGTCACACTCACGAATTCACATGTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGGGTTGACATTACCTACTGGGCCCTTGAGAGCAGCGAGAAGACAATGCATTATTGGAGGAGTTGGGGGAAGTAACGAAATTGAATTTGTACTAAATTTCCAACCAACGGTAAATTTATGTAGCTTGGCACGTAGATCAGAAAGGGTTTGGTTATTCAAGTCAAATAATTCCCCCAAAGGTGTAATATGTGCCCCTTTTGGGTTGATTAAACATAAAGTGAAACCCCACAAACCAAGAGTGATATCCACCATTATTGATGCTCCCATTTCCAATATCATGTTAAGTTTTTTACTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCACCGAGACATTCAATGGCGCACTCAAACTCAAATTTTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTGTATATTCTTGCAACAAACTTTTATGA

Coding sequence (CDS)

ATGGAAAGTAGTGATCATAACACAATGTTCGTCTTCATGCTGGACGAAATCCACGAGTTCGTGGACGCCATCTCCATCCTGGCCGGACTTGACTATGTATTCGATCTCAAGTTCTCACCAAAAATGTTCTCCATAATGGTCAACCGCACACCTTCCTCTCGTTGCACTATAGCCCTTCAACTATTCCCTCCATTCTTCAACCAAGGATATTCTTGCCAACAACTTCACTACTCATGGATTTACATCAACCAGTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATCCACATCATGCCGACCTCACATTTCGCAGTGCCGATGGTTTGTTTAATTTTCTCCTCATTCTTGAATATATATATTGTGTGACATTCAAATTATTGCTTTTAGGCCGTCTTCGTGCAGTTGATTTCCCAATGTATCTTTCGGACGAGTCGATGGATGTGGGTGAGTTCGATTTGGGAACTTTCGTCTCCTTCAGTTCACGAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGTTATGGTCACACTCACGAATTCACATGTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGTTATGGTCACAGTCACGAATTCACATTTCAATTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGTTATGGTCACATTATGGTCACAGTCACGAATTCACATTTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGTTATGGTCACACTCACGAATTCACATGTCAAGTTCTCTTATGCGGGGACAGATATGATTCTTACTCAAGAGGGGTTGACATTACCTACTGGGCCCTTGAGAGCAGCGAGAAGACAATGCATTATTGGAGGAGTTGGGGGAAGTAACGAAATTGAATTTGTACTAAATTTCCAACCAACGGTAAATTTATGTAGCTTGGCACGTAGATCAGAAAGGGTTTGGTTATTCAAGTCAAATAATTCCCCCAAAGGTGTAATATGTGCCCCTTTTGGGTTGATTAAACATAAAGTGAAACCCCACAAACCAAGAGTGATATCCACCATTATTGATGCTCCCATTTCCAATATCATGTTAAGTTTTTTACTTTATAAGCAACTGCATGATTTCGTAGATGCCATCTCTGTCCTCACCGAGACATTCAATGGCGCACTCAAACTCAAATTTTCACAGTCAAGGTTCTCTATAATGGCGGCTACATCACCTTCGTCTCATTGCATTTTAGCCCTTCAATTATCCCCTAATTTCTTCGCTGTATATTCTTGCAACAAACTTTTATGA

Protein sequence

MESSDHNTMFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSADGLFNFLLILEYIYCVTFKLLLLGRLRAVDFPMYLSDESMDVGEFDLGTFVSFSSREFINIVTLNNFDSVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMVTVTNSHFKFSYAGTDMILTQELWSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKFSYAGTDMILTQEGLTLPTGPLRAARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSERVWLFKSNNSPKGVICAPFGLIKHKVKPHKPRVISTIIDAPISNIMLSFLLYKQLHDFVDAISVLTETFNGALKLKFSQSRFSIMAATSPSSHCILALQLSPNFFAVYSCNKLL

Homology

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BLAST of CaUC06G110560 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 1.7e-57
Identity = 124/180 (68.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 9   MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQ 68
           MFVF+L+EIH FVDA+S+LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 69  GYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSADGLFNFLLILE 128
            YSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFAD  HADLTF S D          
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRD---------- 120

Query: 129 YIYCVTFKLLLLGRLRAVDFPMYLSDESMDV--GEFDLGTFVSFSSREFINIVTLNNFDS 187
                       G LR +DFPMY SD SMD    + D  TFVSFSS+EFINIVTLNNFDS
Sbjct: 121 ------------GHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDS 158

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BLAST of CaUC06G110560 vs. NCBI nr
Match: XP_023006011.1 (uncharacterized protein LOC111498888 [Cucurbita maxima])

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-48
Identity = 142/376 (37.77%), Postives = 175/376 (46.54%), Query Frame = 0


Query: 17  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQL 76
           +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSSRC IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 77  HYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHAD----LTFRSADGLFNFLLILEYIY 136
           HY +IYI  F+  M + ER GFSSLTF+F +P   D    L   S   +  +   + + +
Sbjct: 61  HYKFIYIESFYDFMHNFERKGFSSLTFTFPEPDRVDSNVALRVMSEACINVYSCTIPWRF 120

Query: 137 CVTFKLLLL-----GRLRAVDFPMYLSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFD 196
                +L       G    V+ PM+ S + MDVG FD GTFVS  S+EFINIVT  N+FD
Sbjct: 121 LAATAILKFFDGSNGHFEEVELPMFPSSKVMDVGAFDFGTFVSIDSQEFINIVTCFNDFD 180

Query: 197 SVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMVTVTNSHFKFSYAGTDMILTQEL 256
            V+VTLTNS V FSY  T +ILTQE                                   
Sbjct: 181 YVLVTLTNSQVIFSYGKTKIILTQE----------------------------------- 240

Query: 257 WSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKFSYAGTDMILTQEGLTLPTGPLR 316
                                                                       
Sbjct: 241 ------------------------------------------------------------ 278

Query: 317 AARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSERVWLFKSNNSPKGVICAPFGLIK 376
             RRQCIIGGV  S E+ FV++ QP    C+LARR  RVWLFKS++S +GVI AP GL  
Sbjct: 301 --RRQCIIGGVAASVEVVFVISLQPMTIFCNLARRLRRVWLFKSSDSTRGVIAAPLGLYA 278

Query: 377 HKVKPHKPRVISTIID 382
             +     R+ +T  D
Sbjct: 361 RYLAYFSDRIETTSKD 278

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BLAST of CaUC06G110560 vs. NCBI nr
Match: XP_023548336.1 (uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-47
Identity = 140/377 (37.14%), Postives = 175/377 (46.42%), Query Frame = 0


Query: 17  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQL 76
           +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSSRC IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETFDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 77  HYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHAD----LTFRSADGLFNFLLILEYIY 136
           HY +IYI  F+  M + ER GFSSLTF+F +P   D    L   S   +  +   + + +
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVDSNVALRVMSEACINVYSCTIPWRF 120

Query: 137 CVTFKLLLL-----GRLRAVDFPMYLSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFD 196
                +L       G    V+ PM+ S + MDVG FD GTFVS  S+EFINIVT  N+FD
Sbjct: 121 LAATAILKFFHGSNGHFEEVELPMFPSSKVMDVGPFDFGTFVSIDSQEFINIVTCFNDFD 180

Query: 197 SVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMVTVTNSHFKFSYAGTDMILTQEL 256
            V+VTL NS V FSY  T ++LTQE                                   
Sbjct: 181 YVLVTLINSQVMFSYGKTKIVLTQE----------------------------------- 240

Query: 257 WSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKFSYAGTDMILTQEGLTLPTGPLR 316
                                                                       
Sbjct: 241 ------------------------------------------------------------ 279

Query: 317 AARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSERVWLFKSNNS-PKGVICAPFGLI 376
             RRQCIIGGV  S+E+ FV++ QP    C+LARR  RVWLFKS++S  +GV+ AP GL 
Sbjct: 301 --RRQCIIGGVAASDEVVFVISLQPMTIFCNLARRLRRVWLFKSSDSTTRGVVAAPLGLY 279

Query: 377 KHKVKPHKPRVISTIID 382
              V     R+ +T  D
Sbjct: 361 ARYVAYFSDRIDTTSED 279

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BLAST of CaUC06G110560 vs. NCBI nr
Match: XP_022958855.1 (uncharacterized protein LOC111460009 [Cucurbita moschata])

HSP 1 Score: 199.5 bits (506), Expect = 6.2e-47
Identity = 139/378 (36.77%), Postives = 174/378 (46.03%), Query Frame = 0


Query: 17  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQL 76
           +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSS C I LQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSHCIIELQLSPQFFN-AYLCHQL 60

Query: 77  HYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSADGLFNFLLILEYIYCVTF 136
           HY +IYI  F+  M + ER GFSSLTF+F +P   D     A  + +   I  Y   + +
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVDSNV--AVRVMSEACINVYSCTIPW 120

Query: 137 KLLLL-----------GRLRAVDFPMYLSDESMDVGEFDLGTFVSFSSREFINIVT-LNN 196
           + L             G    V+ PM+ S + MDVG FD+GTFVS  S+EFINIVT  N+
Sbjct: 121 RFLAATAILKFFHGSNGHFEEVELPMFPSCKVMDVGAFDIGTFVSIDSQEFINIVTYFND 180

Query: 197 FDSVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMVTVTNSHFKFSYAGTDMILTQ 256
           FD V+VTL NS V FSY  T ++LT+E                                 
Sbjct: 181 FDYVLVTLINSQVMFSYGKTKIVLTEE--------------------------------- 240

Query: 257 ELWSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKFSYAGTDMILTQEGLTLPTGP 316
                                                                       
Sbjct: 241 ------------------------------------------------------------ 278

Query: 317 LRAARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSERVWLFKSNNSPKGVICAPFGL 376
               RRQCIIGGV  S+E+ FV++ QP    C+LARR  RVWLFKS++S +GVI AP GL
Sbjct: 301 ----RRQCIIGGVAASDEVVFVISLQPMTIFCNLARRLRRVWLFKSSDSTRGVIAAPLGL 278

Query: 377 IKHKVKPHKPRVISTIID 382
               V     R+ +T  D
Sbjct: 361 YARYVAYFSDRIDTTSED 278

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BLAST of CaUC06G110560 vs. NCBI nr
Match: KGN45638.2 (hypothetical protein Csa_005465, partial [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 6.8e-46
Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 9   MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQ 68
           MFVF+LDEIH FVDA+S LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 69  GYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSAD 119
            YSCQQLHYSWIYIN FFPEMFHLERTGFSSLTFSFAD HHADLTF S D
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRD 110

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BLAST of CaUC06G110560 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.4e-58
Identity = 124/180 (68.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 9   MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQ 68
           MFVF+L+EIH FVDA+S+LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 69  GYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSADGLFNFLLILE 128
            YSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFAD  HADLTF S D          
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRD---------- 120

Query: 129 YIYCVTFKLLLLGRLRAVDFPMYLSDESMDV--GEFDLGTFVSFSSREFINIVTLNNFDS 187
                       G LR +DFPMY SD SMD    + D  TFVSFSS+EFINIVTLNNFDS
Sbjct: 121 ------------GHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDS 158

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BLAST of CaUC06G110560 vs. ExPASy TrEMBL
Match: A0A6J1KWL1 (uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.3e-49
Identity = 142/376 (37.77%), Postives = 175/376 (46.54%), Query Frame = 0


Query: 17  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQL 76
           +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSSRC IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 77  HYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHAD----LTFRSADGLFNFLLILEYIY 136
           HY +IYI  F+  M + ER GFSSLTF+F +P   D    L   S   +  +   + + +
Sbjct: 61  HYKFIYIESFYDFMHNFERKGFSSLTFTFPEPDRVDSNVALRVMSEACINVYSCTIPWRF 120

Query: 137 CVTFKLLLL-----GRLRAVDFPMYLSDESMDVGEFDLGTFVSFSSREFINIVT-LNNFD 196
                +L       G    V+ PM+ S + MDVG FD GTFVS  S+EFINIVT  N+FD
Sbjct: 121 LAATAILKFFDGSNGHFEEVELPMFPSSKVMDVGAFDFGTFVSIDSQEFINIVTCFNDFD 180

Query: 197 SVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMVTVTNSHFKFSYAGTDMILTQEL 256
            V+VTLTNS V FSY  T +ILTQE                                   
Sbjct: 181 YVLVTLTNSQVIFSYGKTKIILTQE----------------------------------- 240

Query: 257 WSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKFSYAGTDMILTQEGLTLPTGPLR 316
                                                                       
Sbjct: 241 ------------------------------------------------------------ 278

Query: 317 AARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSERVWLFKSNNSPKGVICAPFGLIK 376
             RRQCIIGGV  S E+ FV++ QP    C+LARR  RVWLFKS++S +GVI AP GL  
Sbjct: 301 --RRQCIIGGVAASVEVVFVISLQPMTIFCNLARRLRRVWLFKSSDSTRGVIAAPLGLYA 278

Query: 377 HKVKPHKPRVISTIID 382
             +     R+ +T  D
Sbjct: 361 RYLAYFSDRIETTSKD 278

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BLAST of CaUC06G110560 vs. ExPASy TrEMBL
Match: A0A6J1H4N0 (uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC111460009 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-47
Identity = 139/378 (36.77%), Postives = 174/378 (46.03%), Query Frame = 0


Query: 17  IHEFVDAISILA-GLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSCQQL 76
           +H+ VDA S+LA   D +FD+KFSP MFSIM   TPSS C I LQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSHCIIELQLSPQFFN-AYLCHQL 60

Query: 77  HYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSADGLFNFLLILEYIYCVTF 136
           HY +IYI  F+  M + ER GFSSLTF+F +P   D     A  + +   I  Y   + +
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVDSNV--AVRVMSEACINVYSCTIPW 120

Query: 137 KLLLL-----------GRLRAVDFPMYLSDESMDVGEFDLGTFVSFSSREFINIVT-LNN 196
           + L             G    V+ PM+ S + MDVG FD+GTFVS  S+EFINIVT  N+
Sbjct: 121 RFLAATAILKFFHGSNGHFEEVELPMFPSCKVMDVGAFDIGTFVSIDSQEFINIVTYFND 180

Query: 197 FDSVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMVTVTNSHFKFSYAGTDMILTQ 256
           FD V+VTL NS V FSY  T ++LT+E                                 
Sbjct: 181 FDYVLVTLINSQVMFSYGKTKIVLTEE--------------------------------- 240

Query: 257 ELWSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKFSYAGTDMILTQEGLTLPTGP 316
                                                                       
Sbjct: 241 ------------------------------------------------------------ 278

Query: 317 LRAARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSERVWLFKSNNSPKGVICAPFGL 376
               RRQCIIGGV  S+E+ FV++ QP    C+LARR  RVWLFKS++S +GVI AP GL
Sbjct: 301 ----RRQCIIGGVAASDEVVFVISLQPMTIFCNLARRLRRVWLFKSSDSTRGVIAAPLGL 278

Query: 377 IKHKVKPHKPRVISTIID 382
               V     R+ +T  D
Sbjct: 361 YARYVAYFSDRIDTTSED 278

[Close]

BLAST of CaUC06G110560 vs. ExPASy TrEMBL
Match: A0A0A0K833 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002320 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.1e-47
Identity = 95/111 (85.59%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 9   MFVFMLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQ 68
           MFVF+LDEIH FVDA+S LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 69  GYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFSFADPHHADLTFRSADG 120
            YSCQQLHYSWIYIN FFPEMFHLERTGFSSLTFSFAD HHADLTF S DG
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 111

[Close]

BLAST of CaUC06G110560 vs. ExPASy TrEMBL
Match: A0A6J1H678 (uncharacterized protein LOC111460398 OS=Cucurbita moschata OX=3662 GN=LOC111460398 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-31
Identity = 102/320 (31.87%), Postives = 137/320 (42.81%), Query Frame = 0


Query: 44  SIMVNRTPSSRCTIALQLFPPFFNQGYSCQQLHYSWIYINQFFPEMFHLERTGFSSLTFS 103
           SIM + +P + C IA+QL PP+F Q Y+C  LHYSWI I++ FP M  L R GFSSL+FS
Sbjct: 5   SIMGSASPETACIIAIQLCPPYF-QTYTCDHLHYSWINIHKIFPLMSDLNRAGFSSLSFS 64

Query: 104 FADPHHADLTFRSADGLFNFLLILEYIYCVTFKLLLLGRLRAVDFPMYLSDESMDVGEFD 163
           F  P+ A+L F                           RLR  DF +  S+ S D+G +D
Sbjct: 65  FTAPNLANLVFMGP-----------------------SRLREADFGLNPSNGSRDIGPYD 124

Query: 164 LGTFVSFSSREFINIVTLNNFDSVMVTLTNSHVKFSYAGTDMILTQELWSQSRIHISIMV 223
             TFV+  S+EFINI+T                                           
Sbjct: 125 YSTFVTLESKEFINIIT------------------------------------------- 184

Query: 224 TVTNSHFKFSYAGTDMILTQELWSHYGHSHEFTFQVLLCGDRYDSYSRVMVTLTNSHVKF 283
                                         +F F           Y  V+VTLT+S VKF
Sbjct: 185 ------------------------------DFEF-----------YRYVLVTLTSSQVKF 204

Query: 284 SYAGTDMILTQEGLTLPTGPLRAARRQCIIGGVGGSNEIEFVLNFQPTVNLCSLARRSER 343
           SY     I+T+E              +C+IGG+  S  I++++   P    C+L R++ER
Sbjct: 245 SYTRFQTIITRES------------GRCVIGGIEESCFIKYIITVHPMHTFCNLVRQTER 204

Query: 344 VWLFKSNNSPKGVICAPFGL 364
           VWLFKS+ + KGVI AP GL
Sbjct: 305 VWLFKSDEAAKGVISAPLGL 204

The following BLAST results are available for this feature:

BLAST of CaUC06G110560 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02997.1	1.7e-57	68.89	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
XP_023006011.1	1.9e-48	37.77	uncharacterized protein LOC111498888 [Cucurbita maxima]	[more]
XP_023548336.1	2.8e-47	37.14	uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]	[more]
XP_022958855.1	6.2e-47	36.77	uncharacterized protein LOC111460009 [Cucurbita moschata]	[more]
KGN45638.2	6.8e-46	85.45	hypothetical protein Csa_005465, partial [Cucumis sativus]	[more]

BLAST of CaUC06G110560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G110560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BU35	8.4e-58	68.89	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1KWL1	9.3e-49	37.77	uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888...	[more]
A0A6J1H4N0	3.0e-47	36.77	uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]
A0A0A0K833	5.1e-47	85.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002320 PE=4 SV=1	[more]
A0A6J1H678	3.9e-31	31.88	uncharacterized protein LOC111460398 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]

BLAST of CaUC06G110560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G110560.1	CaUC06G110560.1	mRNA