CaUC06G110510 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G110510
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Ciama_Chr06: 4802402 .. 4803227 (+)
RNA-Seq Expression	CaUC06G110510
Synteny	CaUC06G110510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTTATCAAGCTCCAGAATCTTGCTCCTCTTTTGAAGGCAACTTCTATATTCACTCAACTTGCTAACGATGAAGTCTGCCTGAAATTCTCGCCGTCGATGTTCTCGATAACTGCTCAGTTCCAGTCCCCTCCCTTCATTGCGATGATGCTTATGGATCAGCCATTTTTCGCCAACTATTCCATTGATCAGAATCAGATTTCAAAGATTTCCCTCCAAACCTTCCACAATGCTTTATCGCAAGGCCAAAGGTTTTGTACAATGACCATCCATCTACTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGCCTTCAAGTTAGTATACAATATAATACCCTTTTTCCTATATATATGTTTCTTCTTCAAAAATGAATCTTTATTTAATTTGTTGTTTTTCTTGATTCTTTCATTCATTTTGATTTCACTTTTTAGGTCATTTGGCACCATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTTCCGAAATAAATCCAAAAAATTTCTGTATTGGTTCACAAATGTTTAAACGTATTCTTACAACATTTTCTGTCAATGATGAAGTTAAAAGTAATCAAATTCTTCTTTCCTTTTTCATATATTTTACTTGAAAGAAAAGGTTGTGTGTATATCTTGCTAAAACCTTCCTCATTATTTGTCACAGTTTTGATTACTTTGACGGGTTCACAAGTCAAGTTCTCTGTCTTACAATTTCGTGACATAATTTTTAGCCAAGAGGTATATGTTCACACAAGTAAAAATTGCTTCTTGTGTTTCAAAATAAACTTGATTAAATCTTTCCTCTAA

mRNA sequence

ATGTTCTTTATCAAGCTCCAGAATCTTGCTCCTCTTTTGAAGGCAACTTCTATATTCACTCAACTTGCTAACGATGAAGTCTGCCTGAAATTCTCGCCGTCGATGTTCTCGATAACTGCTCAGTTCCAGTCCCCTCCCTTCATTGCGATGATGCTTATGGATCAGCCATTTTTCGCCAACTATTCCATTGATCAGAATCAGATTTCAAAGATTTCCCTCCAAACCTTCCACAATGCTTTATCGCAAGGCCAAAGGTTTTGTACAATGACCATCCATCTACTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGCCTTCAAGTCATTTGGCACCATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTTCCGAAATAAATCCAAAAAATTTCTGTATTGGTTCACAAATGTTTAAACGTATTCTTACAACATTTTCTGTCAATGATGAAGTTAAAATTTTGATTACTTTGACGGGTTCACAAGTCAAGTTCTCTGTCTTACAATTTCGTGACATAATTTTTAGCCAAGAGGTATATGTTCACACAAGTAAAAATTGCTTCTTGTGTTTCAAAATAAACTTGATTAAATCTTTCCTCTAA

Coding sequence (CDS)

ATGTTCTTTATCAAGCTCCAGAATCTTGCTCCTCTTTTGAAGGCAACTTCTATATTCACTCAACTTGCTAACGATGAAGTCTGCCTGAAATTCTCGCCGTCGATGTTCTCGATAACTGCTCAGTTCCAGTCCCCTCCCTTCATTGCGATGATGCTTATGGATCAGCCATTTTTCGCCAACTATTCCATTGATCAGAATCAGATTTCAAAGATTTCCCTCCAAACCTTCCACAATGCTTTATCGCAAGGCCAAAGGTTTTGTACAATGACCATCCATCTACTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGCCTTCAAGTCATTTGGCACCATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTTCCGAAATAAATCCAAAAAATTTCTGTATTGGTTCACAAATGTTTAAACGTATTCTTACAACATTTTCTGTCAATGATGAAGTTAAAATTTTGATTACTTTGACGGGTTCACAAGTCAAGTTCTCTGTCTTACAATTTCGTGACATAATTTTTAGCCAAGAGGTATATGTTCACACAAGTAAAAATTGCTTCTTGTGTTTCAAAATAAACTTGATTAAATCTTTCCTCTAA

Protein sequence

MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFANYSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTILPMEDWSPSEINPKNFCIGSQMFKRILTTFSVNDEVKILITLTGSQVKFSVLQFRDIIFSQEVYVHTSKNCFLCFKINLIKSFL

Homology

[Close]

BLAST of CaUC06G110510 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-32
Identity = 85/186 (45.70%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF IK+ ++ P L AT +F +L +DE+CLKF PS  SI  +++ P F   M + QP F  
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELT- 120
           YS+D+N IS+ISL +F++AL + Q F  + IHL E  N+ILL FEPSS     L+ ELT 
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSPSTLPLNRELTF 120

Query: 121 ILPMEDWSPSEIN--PKNFCIGSQMFKRILTTFSVNDEVK-ILITLTGSQVKFSVLQFRD 180
           ++PMEDWS +++N   K F I SQ+F  I+  FS   E   ILI   GS+V FS+L F +
Sbjct: 121 VVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFGSKVSFSILPFAE 180

Query: 181 IIFSQE 183
              ++E
Sbjct: 181 TPLTEE 186

[Close]

BLAST of CaUC06G110510 vs. NCBI nr
Match: XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 6.4e-28
Identity = 73/183 (39.89%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF ++L+   PL+ ATS+  Q+A D   +KF+P M  I    +SP F+A + + +  F N
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTN 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTI 120
           +S+D N+ SK+SLQ FH+A+  G  F +MTIHLL+  N+++LRFE  SH  P LHHEL +
Sbjct: 61  FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120

Query: 121 LPMEDWSPSEINPKN-FCIGSQMFKRILTTFSVNDEVKILITLTGSQVKFSVLQFRDIIF 180
            P +  +  ++   N F + S+  +RI+    +  +  + +T+TGSQVKFS+ Q ++II 
Sbjct: 121 SPPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSI-QSKEIIL 180

Query: 181 SQE 183
           ++E
Sbjct: 181 TKE 181

[Close]

BLAST of CaUC06G110510 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-27
Identity = 72/159 (45.28%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF IK+  L PLL A S+FT + ND++CLKFS S FSI A++Q P F AM+ + +P FA 
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTI 120
           Y + ++ I ++SL + H AL++GQ + ++ IHL E  N I L FEPS H    +  ++  
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 -LPMEDWSPSEI--NPKNFCIGSQMFKRILTTFSVNDEV 157
            +PMEDWS  EI  + K+F I S +F+ I+TTF   +EV
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEV 159

[Close]

BLAST of CaUC06G110510 vs. NCBI nr
Match: XP_016903187.1 (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.2e-27
Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF ++L++  PL  ATS   Q+A  E  +KF+P  FSI A  +SP F+A + M    F N
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAR-EADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFIN 62

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTI 120
           Y +D +  S+ISL++FH+AL  G    +MTIHLL  + +++LRFE SSH AP +HHEL++
Sbjct: 63  YKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSH-APKVHHELSL 122

Query: 121 LPMEDWSPSEIN-PKNFCIGSQMFKRILTTFSVNDEVKILITLTGSQVKFSVLQFRDIIF 180
            P ++    E++  K F I S+  +R++    +     I +T TGSQVKFS       I 
Sbjct: 123 TPSQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFS-------IA 182

Query: 181 SQEVYVHTSKNCFLC 195
           S+E+ +   K  F+C
Sbjct: 183 SKEIVLTKEKKLFIC 188

[Close]

BLAST of CaUC06G110510 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-26
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF IK+ NL P L ATS+FT+  NDE+CLKFSPS FS+ A++Q P F AM+ M  P F  
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPS 108
           YS+D+N IS+ISL+ F NAL +GQ + +M+IHL EP N IL +FEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of CaUC06G110510 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28
Identity = 73/183 (39.89%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF ++L+   PL+ ATS+  Q+A D   +KF+P M  I    +SP F+A + + +  F N
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTN 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTI 120
           +S+D N+ SK+SLQ FH+A+  G  F +MTIHLL+  N+++LRFE  SH  P LHHEL +
Sbjct: 61  FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120

Query: 121 LPMEDWSPSEINPKN-FCIGSQMFKRILTTFSVNDEVKILITLTGSQVKFSVLQFRDIIF 180
            P +  +  ++   N F + S+  +RI+    +  +  + +T+TGSQVKFS+ Q ++II 
Sbjct: 121 SPPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSI-QSKEIIL 180

Query: 181 SQE 183
           ++E
Sbjct: 181 TKE 181

[Close]

BLAST of CaUC06G110510 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.9e-28
Identity = 72/159 (45.28%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF IK+  L PLL A S+FT + ND++CLKFS S FSI A++Q P F AM+ + +P FA 
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTI 120
           Y + ++ I ++SL + H AL++GQ + ++ IHL E  N I L FEPS H    +  ++  
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 -LPMEDWSPSEI--NPKNFCIGSQMFKRILTTFSVNDEV 157
            +PMEDWS  EI  + K+F I S +F+ I+TTF   +EV
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEV 159

[Close]

BLAST of CaUC06G110510 vs. ExPASy TrEMBL
Match: A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-27
Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF ++L++  PL  ATS   Q+A  E  +KF+P  FSI A  +SP F+A + M    F N
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAR-EADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFIN 62

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPSSHLAPLLHHELTI 120
           Y +D +  S+ISL++FH+AL  G    +MTIHLL  + +++LRFE SSH AP +HHEL++
Sbjct: 63  YKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSH-APKVHHELSL 122

Query: 121 LPMEDWSPSEIN-PKNFCIGSQMFKRILTTFSVNDEVKILITLTGSQVKFSVLQFRDIIF 180
            P ++    E++  K F I S+  +R++    +     I +T TGSQVKFS       I 
Sbjct: 123 TPSQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFS-------IA 182

Query: 181 SQEVYVHTSKNCFLC 195
           S+E+ +   K  F+C
Sbjct: 183 SKEIVLTKEKKLFIC 188

[Close]

BLAST of CaUC06G110510 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF IK+ NL P L ATS+FT+  NDE+CLKFSPS FS+ A++Q P F AM+ M  P F  
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFEPS 108
           YS+D+N IS+ISL+ F NAL +GQ + +M+IHL EP N IL +FEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]

BLAST of CaUC06G110510 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 0


Query: 1   MFFIKLQNLAPLLKATSIFTQLANDEVCLKFSPSMFSITAQFQSPPFIAMMLMDQPFFAN 60
           MF +KL+N  PLL ATS   Q++ D   LKF+PS F I A  +SP FIA + +   +F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSIDQNQISKISLQTFHNALSQGQRFCTMTIHLLEPLNRILLRFE-PSSHLAPLLHHELT 120
           +S+D +  SK+SL++FH+A+  G  F +MTIHLL+  N+++LRF+ PSS + P LHHELT
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQP-LHHELT 120

Query: 121 ILPME----DWSPSEINP-KNFCIGSQMFKRILTTFSV--NDEVKILITLTGSQVKFSVL 180
           + P +         E++  K F + S+  +RI+    +  ND + I + +T S+VKFS  
Sbjct: 121 LSPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSI-ISVDVTNSRVKFS-- 180

Query: 181 QFRDIIFSQEVYVHTSKNC 192
                I S+E+ +   ++C
Sbjct: 181 -----IASKEIILTEGRHC 190

The following BLAST results are available for this feature:

BLAST of CaUC06G110510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736681.1	4.3e-32	45.70	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
XP_008458682.1	6.4e-28	39.89	PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]	[more]
KGN45637.1	1.4e-27	45.28	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
XP_016903187.1	9.2e-27	40.00	PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]	[more]
KGN61523.1	4.6e-26	57.94	hypothetical protein Csa_006491 [Cucumis sativus]	[more]

BLAST of CaUC06G110510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G110510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8J1	3.1e-28	39.89	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A0A0KB76	6.9e-28	45.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A1S4E4N8	4.5e-27	40.00	uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=...	[more]
A0A0A0LIE0	2.2e-26	57.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A5D3DZ07	1.4e-25	39.20	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CaUC06G110510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..204 e-value: 4.5E-12 score: 47.8
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 4..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G110510.1	CaUC06G110510.1	mRNA