Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCTGCCTCCTCAACCCCACCGAGCCCCTCCTGCCGCCGCCTCCCCATCACAACCAAGCCACCTCCGACTCCTCCGATCTCCGCCATCTACGCAAAGTCACAGCCACCCAAAACCGACGCCGAAAACACCACACCGAACAACAGTATCACCATCAAAAACTTCGGCCACAAAATTCTCTCTGCCGTGAACCCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACAACCCCAAAACAGGAATTGCAACCGGAGGCCGCCCCAATTAGTGGGTCCGATGTCCTGAGGGCGCTGAAGAAGGCGGCTGCCGTGAAAGAGAAGAACAGAACTCGACAAGTTAAAGAGAAGAAGAAAGAAGGGCCTCCCACCGAAGGGAGCGACTCTCAGAATTCTGATATGAACCATGAAGTGAGGCCTCTGAGGATCAAGAGAGATTGGGGATTGAGGCTCACCCAGTTGGAAAAACGCCTTCAGGAAATCTCTGAGTCGGTTTGA
mRNA sequence
ATGTGGGCTGCCTCCTCAACCCCACCGAGCCCCTCCTGCCGCCGCCTCCCCATCACAACCAAGCCACCTCCGACTCCTCCGATCTCCGCCATCTACGCAAAGTCACAGCCACCCAAAACCGACGCCGAAAACACCACACCGAACAACAGTATCACCATCAAAAACTTCGGCCACAAAATTCTCTCTGCCGTGAACCCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACAACCCCAAAACAGGAATTGCAACCGGAGGCCGCCCCAATTAGTGGGTCCGATGTCCTGAGGGCGCTGAAGAAGGCGGCTGCCGTGAAAGAGAAGAACAGAACTCGACAAGTTAAAGAGAAGAAGAAAGAAGGGCCTCCCACCGAAGGGAGCGACTCTCAGAATTCTGATATGAACCATGAAGTGAGGCCTCTGAGGATCAAGAGAGATTGGGGATTGAGGCTCACCCAGTTGGAAAAACGCCTTCAGGAAATCTCTGAGTCGGTTTGA
Coding sequence (CDS)
ATGTGGGCTGCCTCCTCAACCCCACCGAGCCCCTCCTGCCGCCGCCTCCCCATCACAACCAAGCCACCTCCGACTCCTCCGATCTCCGCCATCTACGCAAAGTCACAGCCACCCAAAACCGACGCCGAAAACACCACACCGAACAACAGTATCACCATCAAAAACTTCGGCCACAAAATTCTCTCTGCCGTGAACCCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACAACCCCAAAACAGGAATTGCAACCGGAGGCCGCCCCAATTAGTGGGTCCGATGTCCTGAGGGCGCTGAAGAAGGCGGCTGCCGTGAAAGAGAAGAACAGAACTCGACAAGTTAAAGAGAAGAAGAAAGAAGGGCCTCCCACCGAAGGGAGCGACTCTCAGAATTCTGATATGAACCATGAAGTGAGGCCTCTGAGGATCAAGAGAGATTGGGGATTGAGGCTCACCCAGTTGGAAAAACGCCTTCAGGAAATCTCTGAGTCGGTTTGA
Protein sequence
MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKILSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKKKEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV
Homology
BLAST of CaUC06G109330 vs. NCBI nr
Match:
XP_038906928.1 (uncharacterized protein LOC120092795 [Benincasa hispida])
HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 134/167 (80.24%), Postives = 148/167 (88.62%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAASST P+PSC RLPI T+P PTPP+SAIYA+SQPPKTDA NTTPN+S +IK+FGHKI
Sbjct: 1 MWAASSTLPTPSCHRLPIITRPLPTPPVSAIYAESQPPKTDAGNTTPNDSSSIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSAVN PNPKSLNP PN+TTPKQE QPEAA ISGSD+LRAL+KAAAVKEKNRTRQVK KK
Sbjct: 61 LSAVNSPNPKSLNPKPNKTTPKQEAQPEAAQISGSDILRALQKAAAVKEKNRTRQVKGKK 120
Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
KEGP TEGS +S+MNH VRPL+IK DWGLRL+QLEKRLQE SE V
Sbjct: 121 KEGPTTEGS---HSEMNHRVRPLKIKGDWGLRLSQLEKRLQEFSEPV 164
BLAST of CaUC06G109330 vs. NCBI nr
Match:
XP_022959476.1 (uncharacterized protein LOC111460438 [Cucurbita moschata])
HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 123/168 (73.21%), Postives = 138/168 (82.14%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MW A ST PSPSC RLP+ T+PPPTPP+SAIYAK+QPP+TDA+N TPNNS +IK+FGHKI
Sbjct: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSA N NPKS +P KQE Q E A ISG DVLRAL+KAAAVKEKNRTRQ KE+K
Sbjct: 61 LSAANSTNPKSRSP-----IRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQK 120
Query: 121 KEG-PPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
K+G PPTEGS S NS+MN VRPLRIK DWGLRLT+LEKRLQEISE+V
Sbjct: 121 KDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of CaUC06G109330 vs. NCBI nr
Match:
XP_008459744.1 (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo] >KAA0039758.1 Chaperone ClpB [Cucumis melo var. makuwa] >TYK24738.1 Chaperone ClpB [Cucumis melo var. makuwa])
HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 122/165 (73.94%), Postives = 133/165 (80.61%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAASST PSPS RRLPITT PPP P+S YAKS PPK DAENT PNNS TIK+FGHKI
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSAVN P P+SL NQTTPK E QPEA ISGSDVLRAL+KAAAVKEKNRT+QVKEKK
Sbjct: 61 LSAVNSPTPQSL----NQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKK 120
Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISE 166
K+ ++ S+MNH VRPL+IKRDWGLRLTQLEKRL E+SE
Sbjct: 121 KKKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of CaUC06G109330 vs. NCBI nr
Match:
XP_023006674.1 (uncharacterized protein LOC111499329 [Cucurbita maxima])
HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAA ST PSPSC RLP+ T+P PTPP+SAIYAK+QPP TDA+N TPNNS +IK+FGHKI
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSA NPKS +P KQE Q E A ISG DVLRAL+KAAAVKEKNRTRQVKE+K
Sbjct: 61 LSAAKSTNPKSRSP-----IRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQK 120
Query: 121 KEG-PPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
K+G PPTEGS S NS+MN VRPLRIK DWGLRLT+LEKRLQEISE+V
Sbjct: 121 KDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of CaUC06G109330 vs. NCBI nr
Match:
XP_023547620.1 (uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 212.6 bits (540), Expect = 2.6e-51
Identity = 120/168 (71.43%), Postives = 136/168 (80.95%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAA ST PSPSC RLP+ T+PPPTPP+SAIYAK+QPP+TDA+N TPNNS +IK+FGHKI
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSA N N KS +P KQE Q E A ISG DVLRAL+KAAAVKEKNR RQ +E+K
Sbjct: 61 LSAANSTNSKSRSP-----IRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQK 120
Query: 121 KEG-PPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
K+G PPTEGS S NS+MN VRPLRIK DWGLRL +LEKRLQEISE+V
Sbjct: 121 KDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV 163
BLAST of CaUC06G109330 vs. ExPASy TrEMBL
Match:
A0A6J1H4Y8 (uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC111460438 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 7.8e-54
Identity = 123/168 (73.21%), Postives = 138/168 (82.14%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MW A ST PSPSC RLP+ T+PPPTPP+SAIYAK+QPP+TDA+N TPNNS +IK+FGHKI
Sbjct: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSTSIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSA N NPKS +P KQE Q E A ISG DVLRAL+KAAAVKEKNRTRQ KE+K
Sbjct: 61 LSAANSTNPKSRSP-----IRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQK 120
Query: 121 KEG-PPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
K+G PPTEGS S NS+MN VRPLRIK DWGLRLT+LEKRLQEISE+V
Sbjct: 121 KDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of CaUC06G109330 vs. ExPASy TrEMBL
Match:
A0A5D3DMB8 (Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002990 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 6.6e-53
Identity = 122/165 (73.94%), Postives = 133/165 (80.61%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAASST PSPS RRLPITT PPP P+S YAKS PPK DAENT PNNS TIK+FGHKI
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSAVN P P+SL NQTTPK E QPEA ISGSDVLRAL+KAAAVKEKNRT+QVKEKK
Sbjct: 61 LSAVNSPTPQSL----NQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKK 120
Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISE 166
K+ ++ S+MNH VRPL+IKRDWGLRLTQLEKRL E+SE
Sbjct: 121 KKKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of CaUC06G109330 vs. ExPASy TrEMBL
Match:
A0A6J1L2U1 (uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 6.6e-53
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAA ST PSPSC RLP+ T+P PTPP+SAIYAK+QPP TDA+N TPNNS +IK+FGHKI
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNSSSIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSA NPKS +P KQE Q E A ISG DVLRAL+KAAAVKEKNRTRQVKE+K
Sbjct: 61 LSAAKSTNPKSRSP-----IRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQK 120
Query: 121 KEG-PPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
K+G PPTEGS S NS+MN VRPLRIK DWGLRLT+LEKRLQEISE+V
Sbjct: 121 KDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of CaUC06G109330 vs. ExPASy TrEMBL
Match:
A0A1S3CAW4 (uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 6.6e-53
Identity = 122/165 (73.94%), Postives = 133/165 (80.61%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAASST PSPS RRLPITT PPP P+S YAKS PPK DAENT PNNS TIK+FGHKI
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSAVN P P+SL NQTTPK E QPEA ISGSDVLRAL+KAAAVKEKNRT+QVKEKK
Sbjct: 61 LSAVNSPTPQSL----NQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKK 120
Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISE 166
K+ ++ S+MNH VRPL+IKRDWGLRLTQLEKRL E+SE
Sbjct: 121 KKKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of CaUC06G109330 vs. ExPASy TrEMBL
Match:
A0A0A0KCJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107890 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 7.6e-49
Identity = 120/167 (71.86%), Postives = 128/167 (76.65%), Query Frame = 0
Query: 1 MWAASSTPPSPSCRRLPITTKPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
MWAASST P PSC RL ITT PPTPP+S A SQP TDAEN PNNS +IK FGHKI
Sbjct: 1 MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60
Query: 61 LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
LSAVN P PKSL NQTTPK E PEAA ISGSDVLRAL+KAAAVKEK RT+QVKEKK
Sbjct: 61 LSAVNSPTPKSL----NQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 120
Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
K+ DSQ S+MNH VRPL+I RDWGLRLTQLEKRL EIS+ V
Sbjct: 121 KKKEGAATEDSQ-SEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162
BLAST of CaUC06G109330 vs. TAIR 10
Match:
AT2G46735.1 (unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 52/169 (30.77%), Postives = 73/169 (43.20%), Query Frame = 0
Query: 16 LPITTKPPPTPPISAIYAKSQPPKTDAEN-------TTPNNSITIKNFGHKILSAVNPPN 75
+P+ PT S Y++ P D + T S ++ G +IL
Sbjct: 9 MPVQFHMRPTVATSVAYSQPPPHNYDGIHRRFINVPTKSQTSESVGGLGQQILL------ 68
Query: 76 PKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAA---------VKEKNRTRQVKEK 135
++++ NP + PK+ ISGSDVL A+++A A K KNR V+
Sbjct: 69 -RTVDSNPRKPIPKE------TEISGSDVLWAIQRATAQRKRTNAGKKKTKNRLSGVELS 128
Query: 136 KKEGPPT--EGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISES 167
G PT G D N V PLRIK DWG RL + EK L+E +
Sbjct: 129 SSAGEPTGDNGVDYSN------VTPLRIKSDWGHRLEEFEKLLKEFQNT 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038906928.1 | 3.2e-62 | 80.24 | uncharacterized protein LOC120092795 [Benincasa hispida] | [more] |
XP_022959476.1 | 1.6e-53 | 73.21 | uncharacterized protein LOC111460438 [Cucurbita moschata] | [more] |
XP_008459744.1 | 1.4e-52 | 73.94 | PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo] >KAA0039758.1 Cha... | [more] |
XP_023006674.1 | 1.4e-52 | 73.21 | uncharacterized protein LOC111499329 [Cucurbita maxima] | [more] |
XP_023547620.1 | 2.6e-51 | 71.43 | uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1H4Y8 | 7.8e-54 | 73.21 | uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC1114604... | [more] |
A0A5D3DMB8 | 6.6e-53 | 73.94 | Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00299... | [more] |
A0A6J1L2U1 | 6.6e-53 | 73.21 | uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329... | [more] |
A0A1S3CAW4 | 6.6e-53 | 73.94 | uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=... | [more] |
A0A0A0KCJ8 | 7.6e-49 | 71.86 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107890 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G46735.1 | 2.5e-04 | 30.77 | unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bact... | [more] |