CaUC06G108630 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G108630
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Phosphorylated adapter RNA export protein
Location	Ciama_Chr06: 2286221 .. 2289948 (-)
RNA-Seq Expression	CaUC06G108630
Synteny	CaUC06G108630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATACTATTTATTCTCCCTGCTGGCTCCGTCCTACTGCATAAAAACTGAGCAGTTCAGCACCACTTTCCCCCTTTTCCTTCTCTCCAATCTCCATATTTGCTTCGGACCTTCTTTACCTTTAACTACAACTCACAATCGCACGCCCTCTCCGCTGCACTCGCTTCCCATTTCCATCGCTCCCTTCCTTGAGATTTCCTGTTAAAGCTTCACCTCCCCACTCGATTATTCTTTATTTCCTCTCTTCACTTTCTGGGTAAGTTTTAAATTTAATATTTTTATTGCGTTTCAACCGCACCCATCTCAATTATAACTTCTTTTTCTCCTCTTCTTTTATGGTTTATACTAAGATGCCTGAACTATGTTTTTGTATCTGCCCACTTACCCCTTCAAGTTCAATCAATTAGTGGGAGGCTGTTGACTATACTTTGTTGCTGTGTTTATTCTAGAGATACGTTTTTGTTCTTGTTTTGAAGTTATGTATGCTCTAGTTTGTAGTTACCATATTGAATTAAGGCCATTCTTTTGAGCAATAATTTTGTGCCAATAAAGGGAGTAGTATTTGCAGCCTACTCTACAGAGAAGTTTCTTAAGATTCTTCCACTACTGTTGGCAACCTAATCTTTGGATGAGCTTAATAAGAGATGAGAAACTCTTGATTTCTCCTAGGCCTTGGGGTGGGCGCATACTTTTGGAGAAAACAGAAAAAAAAAAAGTGTTGACAACCAATTTTGACATTTTATTGTTGAGATGAGTAGTTTTTATCTCATTGAACGCCCCAAAACTATGCAAGTGTTGATTTCATTTTCGTCTTGCATATCTTGATAATTTCAAGTTGCAGTTTATATATGTTCCCTGAAACTTTCTCTAGGATTTCTGATTATTTTATGAAATCTTTTGTTTCTCTGAATAGAGACTGTGTCTGATTATTTTATGTAGTTGAGGTATCTTATGGATGGACAAGAGAGCATACTTGAGGCCATATATGAAGATGATGACTTGGAAAAGGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATTGACAGCAATATCAATACAGAGAAAAGCGGTGTTACAGATCTCCAAGCACCAAGTATAGATGAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTAAGTGGAATTTGCTAATCATGTTGTATGCATGCAATTGCATGGAAAAAGAAGCAGCACTGCAAGCACACTTTCTTTAGATACCTTTCTTTTTTGTGTGGAAATCCATTTCAGTTTTGTGAAGTAAATAAATGGATATATTTAACAGAAGGAGTTTTTACTCTGGTTGCTATATTATGCTGATTTCTGTTTCTTTCAGGTTCGTGTTGGATGCATGTAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTATTATGATTTTCTTATATCCTGATAAAAGAATATTTTGTCTGGTTGAGTGATGAAAATCTCTGACCTATCCATTAGTATTAGTTCGAAAACTCCTTCGGTTCCTTAAAGTTTGTTTGAAAATGAACTGAATTGACTAGCCACTAACTAACCAAACCAACATAAACGAGTTTCATCTGTTTTTCCTTTTGGTTTGCATTCAGCCCCCTAGTGAGTACAACTCATGAATTTTTACCACTGTGTGATATACCTTTGTTCAGTACTTTTTGTATCCTCAATACTTTTCGTGGGGCCACAAATGATTTTGCTGCCTTTCTGCTAAAAGTGAAAATCTTCAAACTTAATTTTTTGAGTTTTGACTGGCCTGCCTAATCATGGCCATCCACTCCAGACTCCAGTAAGTATCATACCAAACAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCGTGCAGATTCTGTTGCTGAAGTCATTTTGCTCCTTTTAACCTTGTTCACTGAGCTGTGAACCACCATGGCTGGACTACTACATCTTCATCTGTGCTATATAAGTTGATGTTATTATCCCAGCATATATTGGTTATGATCTCTGTAAGATATTTGTACTTTATTACAGAAACTTTAGTATTGATCACAGTTCACGATCCCTATTTTCCATCCACTTCCCTGAAAATACTACTCCACCTGATTATTCTTACGGAATCTGGACTTCGTTGAAATGCTCTTGGAAGTTTTAAAACGTACTTTTAACTGGATTGCCCAAACTAAAATATGAAGCTCAGTTGTGCATGTCCTATCATAATTTTCATCTTGGGGTTTGAGATTTGCTTTCATGTGAGCTCCTTAAGATCTGTTTTCACTTTTAAAAATTTATAACCGTTTATCAAATTCTTTATATGCAGAAGCCCTTGACTTGCTTTGCCCCTTTGAGTTACCGATGATGCTTAACTAGAGATAGGCAGCATACTTAATAGATGGTCGATTCTGCTTGTAATTGTTTTAGCATTTCTCTTCTTTTACGATACGACACTGTATGATCTTATGTGCACAAGTTGCATGTCGGAATGCCAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGTTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGGTATCTTACAAAACCTTTTCGAAATAGTTTATAACTTGGAAAAGTTTAAGTGACTTATTCCTTTATTCTTACCAAATGAACGTAAAATGTTATCAATATTCCTACTTGGACACTATTAAAAATTTTCATTGTCAGGGCCATCTTTCATCTTTTTGAATCTTTTATCTCATTCAGAGTGGCCTCAGTTTGCTAAGCCTGTATCTAACACTTCTCAAATTGCTGAGCTGATTTGCTCTCCGGTTTTCTTTCTTCTTTTCTTTTGGGTTGTAATTGTATTTTGAAGAGTTGTGTTTTGAAATTCATTCTTGTGTTGGAATATGTGTCAAAGTCCAATTTCTTCTGATGATCCTATACATGAAGTTATTTCCTTTATCAGTTCTTTCTAATTTGGTAGCATGAATGATAATTATACACGTTTTTGTTTATTTCATGATGGTGCAGAAACAATTTAAGCCACCAAATATTAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTGTTCTGTAAAGGATCTTCAGGAGATCAACTGGACTGCATCCAAAGCTTTATTCCGGAGCAGAATCAATCTAAAGAATCAAATTCCGAAGAAAAAAGATCTTCTATTCACAATAGATTAAGAGTACCAGTTTCATATGATGATGACATCCTTCAAGGGAATCCGAAAGAGGAAGATGCGACTTGATTGTAGTTAGATCTTCCCATTTTTTTGAACAATTACTGTTGGTTTTTTAGTTCGTGTCTAACAAAATCAACAGTTTTTACCTCCAAAAATTGAGGCAGAAGAATGTTCTATAAGCTGAGTTTGTTCCAGTTATTTTCAGTGCTTTTATGTTTTACGCTACTTTGGTTGAGCGTTCTTCTTCAGGTGAGGATAGAATTAGCCACATTGAAAGAAATTGGATTTATTGGTTGTAAATGGGAAAAGATTTTGCAATTGTTCCTCATACTCTGCTGTCATTTGAAACAATCTGATAGAGAGAAT

mRNA sequence

AAATACTATTTATTCTCCCTGCTGGCTCCGTCCTACTGCATAAAAACTGAGCAGTTCAGCACCACTTTCCCCCTTTTCCTTCTCTCCAATCTCCATATTTGCTTCGGACCTTCTTTACCTTTAACTACAACTCACAATCGCACGCCCTCTCCGCTGCACTCGCTTCCCATTTCCATCGCTCCCTTCCTTGAGATTTCCTGTTAAAGCTTCACCTCCCCACTCGATTATTCTTTATTTCCTCTCTTCACTTTCTGGAGACTGTGTCTGATTATTTTATGTAGTTGAGGTATCTTATGGATGGACAAGAGAGCATACTTGAGGCCATATATGAAGATGATGACTTGGAAAAGGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATTGACAGCAATATCAATACAGAGAAAAGCGGTGTTACAGATCTCCAAGCACCAAGTATAGATGAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTCGTGTTGGATGCATGTAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGTTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGAAACAATTTAAGCCACCAAATATTAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTGTTCTGTAAAGGATCTTCAGGAGATCAACTGGACTGCATCCAAAGCTTTATTCCGGAGCAGAATCAATCTAAAGAATCAAATTCCGAAGAAAAAAGATCTTCTATTCACAATAGATTAAGAGTACCAGTTTCATATGATGATGACATCCTTCAAGGGAATCCGAAAGAGGAAGATGCGACTTGATTGTAGTTAGATCTTCCCATTTTTTTGAACAATTACTGTTGGTTTTTTAGTTCGTGTCTAACAAAATCAACAGTTTTTACCTCCAAAAATTGAGGCAGAAGAATGTTCTATAAGCTGAGTTTGTTCCAGTTATTTTCAGTGCTTTTATGTTTTACGCTACTTTGGTTGAGCGTTCTTCTTCAGGTGAGGATAGAATTAGCCACATTGAAAGAAATTGGATTTATTGGTTGTAAATGGGAAAAGATTTTGCAATTGTTCCTCATACTCTGCTGTCATTTGAAACAATCTGATAGAGAGAAT

Coding sequence (CDS)

ATGGATGGACAAGAGAGCATACTTGAGGCCATATATGAAGATGATGACTTGGAAAAGGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATTGACAGCAATATCAATACAGAGAAAAGCGGTGTTACAGATCTCCAAGCACCAAGTATAGATGAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTCGTGTTGGATGCATGTAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGTTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGAAACAATTTAAGCCACCAAATATTAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTGTTCTGTAAAGGATCTTCAGGAGATCAACTGGACTGCATCCAAAGCTTTATTCCGGAGCAGAATCAATCTAAAGAATCAAATTCCGAAGAAAAAAGATCTTCTATTCACAATAGATTAAGAGTACCAGTTTCATATGATGATGACATCCTTCAAGGGAATCCGAAAGAGGAAGATGCGACTTGA

Protein sequence

MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDDDILQGNPKEEDAT

Homology

[Close]

BLAST of CaUC06G108630 vs. NCBI nr
Match: XP_038906568.1 (uncharacterized protein LOC120092530 [Benincasa hispida])

HSP 1 Score: 418.7 bits (1075), Expect = 3.6e-113
Identity = 218/253 (86.17%), Postives = 235/253 (92.89%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE++LEAIYED+DLE DDVEMVDV EGEF+  NINTEKS +TD+++ SID+RSKNRK
Sbjct: 1   MDGQENVLEAIYEDNDLENDDVEMVDV-EGEFVGDNINTEKSSLTDVKSASIDQRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR KKKKNKRK CESGS GTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV
Sbjct: 61  RRAKKKKNKRKTCESGSTGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK P+IRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPSIRREAT 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           ETEKE+SQ+VPHLF +GSSGDQLD  Q   PEQN+SKESN+EEKRSSIHNRLRVPVSYDD
Sbjct: 181 ETEKENSQRVPHLFSEGSSGDQLDNFQRVTPEQNRSKESNAEEKRSSIHNRLRVPVSYDD 240

Query: 241 DILQGNPKEEDAT 254
           D+L+ NPKEED T
Sbjct: 241 DLLRENPKEEDTT 252

[Close]

BLAST of CaUC06G108630 vs. NCBI nr
Match: XP_023547831.1 (uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.8 bits (1070), Expect = 1.4e-112
Identity = 219/253 (86.56%), Postives = 233/253 (92.09%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE+DDLE DDVEMVDVEEGEF++ NI+TEKS +TD+QAPSID RSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           E  K SSQ+V HLF +G+S DQ D IQS  PEQNQSKESNSEEKRSS+H RLRVPVSYDD
Sbjct: 181 EIGKASSQEVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 241 DILQGNPKEEDAT 254
           DIL+ NPKEED T
Sbjct: 241 DILRENPKEEDTT 253

[Close]

BLAST of CaUC06G108630 vs. NCBI nr
Match: XP_022959193.1 (uncharacterized protein LOC111460255 [Cucurbita moschata])

HSP 1 Score: 413.3 bits (1061), Expect = 1.5e-111
Identity = 217/253 (85.77%), Postives = 232/253 (91.70%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE+DDLE DDVEMVDVEEGEF++ NI+TEKS +TD+QAPSID +SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           E  K SSQ V HLF +G+S DQ D IQS  PEQNQSKESNSEEKRSS+H RLRVPVSYDD
Sbjct: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 241 DILQGNPKEEDAT 254
           DIL+ NPKEED +
Sbjct: 241 DILRENPKEEDTS 253

[Close]

BLAST of CaUC06G108630 vs. NCBI nr
Match: KAG7013367.1 (hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.8 bits (1057), Expect = 4.4e-111
Identity = 216/253 (85.38%), Postives = 232/253 (91.70%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE+DDLE DDVEMVDVEEGEF++ NI+TEKS +TD+QAPSID +SKNRK
Sbjct: 64  MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 123

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 124 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 183

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 184 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 243

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           E  K SSQ+V HLF +G+S DQ D IQS  PEQNQSKESN EEKRSS+H RLRVPVSYDD
Sbjct: 244 EIGKASSQEVLHLFSEGASQDQPDSIQSLTPEQNQSKESNFEEKRSSVHERLRVPVSYDD 303

Query: 241 DILQGNPKEEDAT 254
           DIL+ NPKEED +
Sbjct: 304 DILRENPKEEDTS 316

[Close]

BLAST of CaUC06G108630 vs. NCBI nr
Match: KAG6574787.1 (hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.8 bits (1057), Expect = 4.4e-111
Identity = 216/253 (85.38%), Postives = 232/253 (91.70%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE+DDLE DDVEMVDVEEGEF++ NI+TEKS +TD+QAPSID +SKNRK
Sbjct: 76  MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 135

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 136 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 195

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 196 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 255

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           E  K SSQ+V HLF +G+S DQ D IQS  PEQNQSKESN EEKRSS+H RLRVPVSYDD
Sbjct: 256 EIGKASSQEVLHLFSEGASQDQPDSIQSLTPEQNQSKESNFEEKRSSVHERLRVPVSYDD 315

Query: 241 DILQGNPKEEDAT 254
           DIL+ NPKEED +
Sbjct: 316 DILRENPKEEDTS 328

[Close]

BLAST of CaUC06G108630 vs. ExPASy TrEMBL
Match: A0A6J1H592 (Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC111460255 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 7.3e-112
Identity = 217/253 (85.77%), Postives = 232/253 (91.70%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE+DDLE DDVEMVDVEEGEF++ NI+TEKS +TD+QAPSID +SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           E  K SSQ V HLF +G+S DQ D IQS  PEQNQSKESNSEEKRSS+H RLRVPVSYDD
Sbjct: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 241 DILQGNPKEEDAT 254
           DIL+ NPKEED +
Sbjct: 241 DILRENPKEEDTS 253

[Close]

BLAST of CaUC06G108630 vs. ExPASy TrEMBL
Match: A0A5D3DLH5 (Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00350 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.2e-111
Identity = 217/254 (85.43%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDG E+ILEAIYE D+ E DDVEM DVEEGEFID+NIN EKS  TD+QAPS D+RSKNRK
Sbjct: 1   MDGHENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQL-DCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYD 240
           ETEKESSQKVPHLF +G S   L D +QSF  E N+SKESNSEEKRSSIH+RLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 241 DDILQGNPKEEDAT 254
           DD+LQ NPKEED T
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]

BLAST of CaUC06G108630 vs. ExPASy TrEMBL
Match: A0A0A0KBJ7 (Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.2e-111
Identity = 217/253 (85.77%), Postives = 229/253 (90.51%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYEDD LE DDVEM DVEEGEFID NIN EKS  TD+QAPS D+RSKNRK
Sbjct: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRK 63

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
            RTKKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 64  HRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PN+RREAT
Sbjct: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           ETEKESSQKVPHLF +GSS +  D +QSF  E NQSKESNSEEK SSIH+RLRVPVSYDD
Sbjct: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243

Query: 241 DILQGNPKEEDAT 254
           D+LQ NPKEED T
Sbjct: 244 DLLQENPKEEDTT 256

[Close]

BLAST of CaUC06G108630 vs. ExPASy TrEMBL
Match: A0A1S3CD38 (Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC103499036 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 8.1e-111
Identity = 217/254 (85.43%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE D+ E DDVEM DVEEGEFID+NIN EKS  TD+QAPS D+RSKNRK
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREA 
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAR 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQL-DCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYD 240
           ETEKESSQKVPHLF +G S   L D +QSF  E N+SKESNSEEKRSSIH+RLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 241 DDILQGNPKEEDAT 254
           DD+LQ NPKEED T
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]

BLAST of CaUC06G108630 vs. ExPASy TrEMBL
Match: A0A6J1KUZ4 (Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC111498940 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.5e-109
Identity = 215/253 (84.98%), Postives = 229/253 (90.51%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDLQAPSIDERSKNRK 60
           MDGQE+ILEAIYE+DDLE DDVEMVDVEEGE ++ NI+TEKS +TD+QAPSID RSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSE IKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSSIHNRLRVPVSYDD 240
           E  K SSQ+V HLF +G+S DQ D IQS  P QNQSKESNSEEKRSS+  RLRVPVSYDD
Sbjct: 181 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 240

Query: 241 DILQGNPKEEDAT 254
           DIL+ NPKEED T
Sbjct: 241 DILRENPKEEDTT 253

[Close]

BLAST of CaUC06G108630 vs. TAIR 10
Match: AT3G20430.1 (CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-49
Identity = 121/253 (47.83%), Postives = 165/253 (65.22%), Query Frame = 0


Query: 1   MDGQESILEAIYEDDDLEK-DDVEMVDVEEGEF-IDSNI------NTEKSGVTDLQA--- 60
           M+G+ES+L+AI E+D  E  +DVEMVDVEEGE  +D ++      N +  GV D +A   
Sbjct: 1   MEGEESLLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILG 60

Query: 61  --PSIDERSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGC 120
               + + +KN KR+ KKKK K    +   +   ++ FV D CRRLKEKKSYM+YTAVGC
Sbjct: 61  EKNGLQQTNKN-KRKKKKKKRKGPVMDKPMS---VDWFVRDTCRRLKEKKSYMIYTAVGC 120

Query: 121 LGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFE 180
           LG++ALS+L+ EV A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEFE
Sbjct: 121 LGIAALSDLVNEVVAIETCGGQVTADGTRKRTSGGVLWNIIKARQPEAYREIMKKTKEFE 180

Query: 181 KQFKPPNIRREATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQSKESNSEEKRSS 240
           KQF+ PN R ++     + S          S+ + L      +P   Q+ ES  E++R S
Sbjct: 181 KQFRQPNTRPKSGPKRDQGSSSEGLASGNVSADEALVSEMCVMPVAEQT-ESKPEKERKS 240

The following BLAST results are available for this feature:

BLAST of CaUC06G108630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906568.1	3.6e-113	86.17	uncharacterized protein LOC120092530 [Benincasa hispida]	[more]
XP_023547831.1	1.4e-112	86.56	uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]	[more]
XP_022959193.1	1.5e-111	85.77	uncharacterized protein LOC111460255 [Cucurbita moschata]	[more]
KAG7013367.1	4.4e-111	85.38	hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574787.1	4.4e-111	85.38	hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC06G108630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G108630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H592	7.3e-112	85.77	Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5D3DLH5	6.2e-111	85.43	Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KBJ7	6.2e-111	85.77	Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G07...	[more]
A0A1S3CD38	8.1e-111	85.43	Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC10349903...	[more]
A0A6J1KUZ4	1.5e-109	84.98	Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of CaUC06G108630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20430.1	1.3e-49	47.83	CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-bindi...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038092	Phosphorylated adapter RNA export protein, RNA-binding domain superfamily	GENE3D	1.10.10.1440		coord: 77..173 e-value: 7.6E-31 score: 108.1
IPR019385	Phosphorylated adapter RNA export protein, RNA-binding domain	PFAM	PF10258	RNA_GG_bind	coord: 87..165 e-value: 1.9E-23 score: 82.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..236
IPR039047	Phosphorylated adapter RNA export protein	PANTHER	PTHR13135	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	coord: 1..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G108630.1	CaUC06G108630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006408	snRNA export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding