CaUC06G108600 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G108600
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionNuclear protein X1
LocationCiama_Chr06: 2266862 .. 2267376 (+)
RNA-Seq ExpressionCaUC06G108600
SyntenyCaUC06G108600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTACGGAATCTGCACAACCGACTTCGTGTAACTCGATTCAAGTTTAGATCCAGGCGCGGCGGAGCCGAATGCGACCTTACCGCCCTGGAGATCGGTAATGTTGACAAAACCTAGATTACCAGGCGCGTTGCCGGTGGTTTGGTAGAGCGTAGTGGAAAGAGTGGTTCCGTTGGAGATCTTGTGGAGTTTCGCCGGATCGTAGTAGTCCAAGACGATGTGGAGACTGAGGAGGTTTTTGATAACGGAGAGAGGATGTTTGGCAACGATGGGGGAGAGAGCGCCATTGGAGACGACAAGGACGGTGATAGTCTGACGGCTGTTGATCTCGTCAGCGAGTCTAGTCTGCTGCAGGTAGTTGCTGAAATCGCTGTACTGAGGGTAGTCTTTGAGCATGTCAGTAATATTGTGGGCGGAGACGATGGCAGCAGCGGCGGCGAAGGCGAGGAAGAGGAGAAGGGATTTGGAGGCCGCCATTGGAGAGGGGAGAGGAGAAACAGAGGAGGAGGATGA

mRNA sequence

ATGTTGCGCGGCGGAGCCGAATGCGACCTTACCGCCCTGGAGATCGGTAATATTACCAGGCGCGTTGCCGGTGGTTTGGTAGAGCGTAGTGGAAAGAGTGGTTCCGTTGGAGATCTTGTGGAGTTTCGCCGGATCGTAGTAGTCCAAGACGATGTGGAGACTGAGGAGGTTTTTGATAACGGAGAGAGGATGTTTGGCAACGATGGGGGAGAGAGCGCCATTGGAGACGACAAGGACGGTGATAGTCTGACGGCTGTTGATCTCGTCAGCGAGTCTAGTCTGCTGCAGGTAGTTGCTGAAATCGCTGTACTGAGGGTAGTCTTTGAGCATGTCAGTAATATTGTGGGCGGAGACGATGGCAGCAGCGGCGGCGAAGGCGAGGAAGAGGAGAAGGGATTTGGAGGCCGCCATTGGAGAGGGGAGAGGAGAAACAGAGGAGGAGGATGA

Coding sequence (CDS)

ATGTTGCGCGGCGGAGCCGAATGCGACCTTACCGCCCTGGAGATCGGTAATATTACCAGGCGCGTTGCCGGTGGTTTGGTAGAGCGTAGTGGAAAGAGTGGTTCCGTTGGAGATCTTGTGGAGTTTCGCCGGATCGTAGTAGTCCAAGACGATGTGGAGACTGAGGAGGTTTTTGATAACGGAGAGAGGATGTTTGGCAACGATGGGGGAGAGAGCGCCATTGGAGACGACAAGGACGGTGATAGTCTGACGGCTGTTGATCTCGTCAGCGAGTCTAGTCTGCTGCAGGTAGTTGCTGAAATCGCTGTACTGAGGGTAGTCTTTGAGCATGTCAGTAATATTGTGGGCGGAGACGATGGCAGCAGCGGCGGCGAAGGCGAGGAAGAGGAGAAGGGATTTGGAGGCCGCCATTGGAGAGGGGAGAGGAGAAACAGAGGAGGAGGATGA

Protein sequence

MLRGGAECDLTALEIGNITRRVAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVFDNGERMFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGGDDGSSGGEGEEEEKGFGGRHWRGERRNRGGG
Homology
BLAST of CaUC06G108600 vs. NCBI nr
Match: KCW72927.1 (hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-16
Identity = 62/143 (43.36%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 4   GGAECDLTALEIGNITRR-----VAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVF 63
           GGAE  L ALE+G++        V GGLV+  G+ G++GDLVE   + VV+DDV+ E V 
Sbjct: 271 GGAEAHLAALEVGDVDEAGVAGGVPGGLVQGGGEGGALGDLVELLGVEVVEDDVDGELVL 330

Query: 64  DNGERMFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGGD 123
           D+GE +   +GG  A+ + +DGD L AVDLV +  L +V AE  VL    E   ++V GD
Sbjct: 331 DDGEGLLAGEGGHGAVVEGEDGDGLAAVDLVGQLGLAEVGAEEGVLGEALEDGGDVVAGD 390

Query: 124 DGSSGGEGEEEEKGFGGRHWRGE 142
            G    E EEE  G G     GE
Sbjct: 391 GGGGAQEEEEEGGGEGAECGHGE 413

BLAST of CaUC06G108600 vs. NCBI nr
Match: GER33580.1 (nuclear protein X1 [Striga asiatica])

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-12
Identity = 58/137 (42.34%), Postives = 77/137 (56.20%), Query Frame = 0

Query: 5   GAECDLTALEIGNI-----TRRVAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVFD 64
           G E DL AL++G++        +AGGL E  G  G++GDLVE     VV +DVE E+VFD
Sbjct: 156 GGEADLPALDVGDVDVSGGAGGLAGGLEEGGGGGGALGDLVELLGAEVVGEDVEGEDVFD 215

Query: 65  NGER-MFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGGD 124
            GE  + G + G   + D  DGD   AVDL  E    +VV E   + V+ E   ++VG  
Sbjct: 216 GGEGIVVGEEVGHGGVVDGADGDGAAAVDLGCEVGRGEVVVEGGEVGVIGEDAGDVVGA- 275

Query: 125 DGSSGGEGEEEEKGFGG 136
           DG  GG GE+E+ G GG
Sbjct: 276 DGGHGGAGEDEKDGEGG 291

BLAST of CaUC06G108600 vs. NCBI nr
Match: KAF7844743.1 (hypothetical protein G2W53_001648 [Senna tora])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-11
Identity = 56/130 (43.08%), Postives = 68/130 (52.31%), Query Frame = 0

Query: 6   AECDLTALEI-----GNITRRVAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVFDN 65
           AE DLTALE+       +TRRVAG LVE  G+SG+VGDLVEF  +               
Sbjct: 225 AEADLTALEVRYVNEAEVTRRVAGCLVECGGESGAVGDLVEFGWV--------------- 284

Query: 66  GERMFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGGDDG 125
                          +DKDGD L AVDLV E  L +    +AV R   E+V ++VGGD G
Sbjct: 285 ---------------EDKDGDCLAAVDLVGELRLGEEGVVVAVFREAGENVGDVVGGDGG 324

Query: 126 SSGGEGEEEE 131
             GGE EEE+
Sbjct: 345 GEGGESEEEK 324

BLAST of CaUC06G108600 vs. NCBI nr
Match: KAF8702535.1 (hypothetical protein HU200_032917 [Digitaria exilis])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 0

Query: 3   RGGAECDLTALEIGNI-TRRVAGG----LVERSGKSGSVGDLVEFRRIVVVQDDVETEEV 62
           RGG E DL A E+G++    VAGG    LVER G+ G+  + V+   + VV++  E E V
Sbjct: 332 RGGGEPDLAAAEVGDVDVPHVAGGLAGLLVERGGELGAGVEGVQLLLVEVVEESEEAERV 391

Query: 63  FDNGERMFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGG 118
            D GE   G++ G  A+G+D+DGD + AVDLV+   L +V     VLR   E   ++VGG
Sbjct: 392 LDVGEGEVGDERGHGAVGEDEDGDRVLAVDLVAHLGLGEVAVVQRVLRPPVEDGRDVVGG 451

BLAST of CaUC06G108600 vs. NCBI nr
Match: KGN44423.1 (hypothetical protein Csa_016298 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-08
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 35 SVGDLVEFRRIVVVQDDVETEEVFDNGERMFGNDGGESAIGDDKDGDSL 84
          +VGDLVEF  IVVVQDD+ETEE+FDN ERMF  DG ES   +DKDGDSL
Sbjct: 18 TVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

BLAST of CaUC06G108600 vs. ExPASy TrEMBL
Match: A0A059C3M7 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E01366 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.2e-17
Identity = 62/143 (43.36%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 4   GGAECDLTALEIGNITRR-----VAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVF 63
           GGAE  L ALE+G++        V GGLV+  G+ G++GDLVE   + VV+DDV+ E V 
Sbjct: 271 GGAEAHLAALEVGDVDEAGVAGGVPGGLVQGGGEGGALGDLVELLGVEVVEDDVDGELVL 330

Query: 64  DNGERMFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGGD 123
           D+GE +   +GG  A+ + +DGD L AVDLV +  L +V AE  VL    E   ++V GD
Sbjct: 331 DDGEGLLAGEGGHGAVVEGEDGDGLAAVDLVGQLGLAEVGAEEGVLGEALEDGGDVVAGD 390

Query: 124 DGSSGGEGEEEEKGFGGRHWRGE 142
            G    E EEE  G G     GE
Sbjct: 391 GGGGAQEEEEEGGGEGAECGHGE 413

BLAST of CaUC06G108600 vs. ExPASy TrEMBL
Match: A0A5A7PLF7 (Nuclear protein X1 OS=Striga asiatica OX=4170 GN=STAS_09719 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 58/137 (42.34%), Postives = 77/137 (56.20%), Query Frame = 0

Query: 5   GAECDLTALEIGNI-----TRRVAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVFD 64
           G E DL AL++G++        +AGGL E  G  G++GDLVE     VV +DVE E+VFD
Sbjct: 156 GGEADLPALDVGDVDVSGGAGGLAGGLEEGGGGGGALGDLVELLGAEVVGEDVEGEDVFD 215

Query: 65  NGER-MFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVGGD 124
            GE  + G + G   + D  DGD   AVDL  E    +VV E   + V+ E   ++VG  
Sbjct: 216 GGEGIVVGEEVGHGGVVDGADGDGAAAVDLGCEVGRGEVVVEGGEVGVIGEDAGDVVGA- 275

Query: 125 DGSSGGEGEEEEKGFGG 136
           DG  GG GE+E+ G GG
Sbjct: 276 DGGHGGAGEDEKDGEGG 291

BLAST of CaUC06G108600 vs. ExPASy TrEMBL
Match: A0A0A0KZJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G577370 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 0

Query: 27  VERSGKSGSVGDLVEFRRIVVVQDDVETEEVFDNGERMFGNDGGESAIGDDKDGDSLTAV 86
           +E SG+SG VGDLVEF  IVVVQDDV+TEE+F NGERMF  DG ES IG++KD DSLTAV
Sbjct: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72

Query: 87  DLVSESSLLQVVAEIAVLRVVFEHVSNIVGGDDGSSGGEGEEEEKGFGGRHWRGE 142
            LV +S++  VV      R +   + N           E EE + GFG R   GE
Sbjct: 73  YLVGKSAM--VVKARKRRRDLEATMEN----------REREERKDGFGRRGKSGE 115

BLAST of CaUC06G108600 vs. ExPASy TrEMBL
Match: A0A0A0K4L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290465 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 35 SVGDLVEFRRIVVVQDDVETEEVFDNGERMFGNDGGESAIGDDKDGDSL 84
          +VGDLVEF  IVVVQDD+ETEE+FDN ERMF  DG ES   +DKDGDSL
Sbjct: 18 TVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

BLAST of CaUC06G108600 vs. ExPASy TrEMBL
Match: A0A2P5A8V4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356890 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-06
Identity = 54/158 (34.18%), Postives = 75/158 (47.47%), Query Frame = 0

Query: 5   GAECDLTALEIGNI-----TRRVAGGLVERSGKSGSVGDLVEFRRIVVVQDDVETEEVFD 64
           G + D +A+E+G++      R  AGGL     + G+VGDLVE     VV++DV+ E+V D
Sbjct: 115 GGKPDFSAVEVGDVDEAGGARGGAGGLEHGGSEGGAVGDLVELLGAEVVEEDVDGEDVLD 174

Query: 65  NGER-MFGNDGGESAIGDDKDGDSLTAVDLVSESSLLQVVAEIAVLRVVFEHVSNIVG-- 124
             +  + G D     + D  DGD    VDL  E    QVV E   LRV+ E + ++VG  
Sbjct: 175 GVDGWVLGEDVVHGGVVDGADGDGGPPVDLGGEVGQGQVVVEGRELRVLREDLRDVVGLS 234

Query: 125 ----------GDDGSSGGEGEEEEKGFGGRHWRGERRN 145
                     G DG+ GG    EE    G     +R N
Sbjct: 235 AAARGKDHRHGQDGNGGGYSRSEELHCCGLERESKREN 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KCW72927.11.1e-1643.36hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis][more]
GER33580.12.7e-1242.34nuclear protein X1 [Striga asiatica][more]
KAF7844743.11.8e-1143.08hypothetical protein G2W53_001648 [Senna tora][more]
KAF8702535.13.3e-1041.67hypothetical protein HU200_032917 [Digitaria exilis][more]
KGN44423.19.1e-0873.47hypothetical protein Csa_016298 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A059C3M75.2e-1743.36Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E01366 PE=4 SV... [more]
A0A5A7PLF71.3e-1242.34Nuclear protein X1 OS=Striga asiatica OX=4170 GN=STAS_09719 PE=4 SV=1[more]
A0A0A0KZJ21.3e-1252.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G577370 PE=4 SV=1[more]
A0A0A0K4L94.4e-0873.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290465 PE=4 SV=1[more]
A0A2P5A8V49.2e-0634.18Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_356890 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G108600.1CaUC06G108600.1mRNA