CaUC06G108570 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G108570
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	calmodulin-like protein 7
Location	Ciama_Chr06: 2239877 .. 2240155 (+)
RNA-Seq Expression	CaUC06G108570
Synteny	CaUC06G108570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCGTAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTGAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGA

mRNA sequence

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCGTAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTGAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGA

Coding sequence (CDS)

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCGTAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTGAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGA

Protein sequence

MFNLTSSFTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG

Homology

[Close]

BLAST of CaUC06G108570 vs. NCBI nr
Match: XP_004153117.1 (calmodulin-beta [Cucumis sativus] >KGN46235.1 hypothetical protein Csa_005220 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 3.9e-33
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MFNLTSS-FTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          MFNLTSS F TFF RN I+SKPFF+KSLNNQKLPSFTTFNHF+LLFNLLDS+GDGKISTK
Sbjct: 1  MFNLTSSLFPTFFHRN-ISSKPFFQKSLNNQKLPSFTTFNHFQLLFNLLDSDGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EAE+MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of CaUC06G108570 vs. NCBI nr
Match: XP_008460131.1 (PREDICTED: calmodulin-like protein 7 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 8.6e-33
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MFNLTSS-FTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          M NLTSS F+TFF RN ITSKPFF+KSLNNQKLPSFTTFNHF+LLFN+LDS GDGKISTK
Sbjct: 1  MLNLTSSLFSTFFHRN-ITSKPFFQKSLNNQKLPSFTTFNHFQLLFNILDSGGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EAE+MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of CaUC06G108570 vs. NCBI nr
Match: KAA0040005.1 (calmodulin-like protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MFNLTSS-FTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          M NLTSS F+TFF RN ITSKPFF+KSLNNQKLPSFTT NHF+LLFNLLDS+GDGKISTK
Sbjct: 1  MLNLTSSLFSTFFHRN-ITSKPFFQKSLNNQKLPSFTTSNHFQLLFNLLDSDGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
          EL +FLYRLGYKKLK   EAE+MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKPTMEAEEMVKEMDSDRDG 92

[Close]

BLAST of CaUC06G108570 vs. NCBI nr
Match: XP_039139041.1 (probable calcium-binding protein CML23 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 18 TSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKART 77
          TS  F   ++   K  +    N  + +FNL+DSNGDGKIS  EL++ L  LGY K  A  
Sbjct: 17 TSTNFNTSTMIMSKYATMELPNQLKQVFNLIDSNGDGKISPLELKQVLQSLGYDKSIAAR 76

Query: 78 EAEDMVKEMDSDRDG 93
          EAE MVKEMDSD DG
Sbjct: 77 EAEGMVKEMDSDGDG 91

[Close]

BLAST of CaUC06G108570 vs. NCBI nr
Match: XP_012083557.1 (probable calcium-binding protein CML27 [Jatropha curcas] >KDP28741.1 hypothetical protein JCGZ_14512 [Jatropha curcas])

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 7   SFTT---FFRRNIITSKPFFKKSLNNQKL-----PSFTTF---NHFELLFNLLDSNGDGK 66
           SFTT     RR +I      K++L++        PSF +    N F+ +FNL+D+NGDGK
Sbjct: 4   SFTTCLSSLRRRVIAKLTKHKRNLSSSTFDFSDTPSFASMEIPNQFKQVFNLIDANGDGK 63

Query: 67  ISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           IS+ +L   L  LG  K KA+ EAE MVKE+D + DG
Sbjct: 64  ISSYDLIELLLCLGCDKSKAKAEAEGMVKELDRNGDG 100

[Close]

BLAST of CaUC06G108570 vs. ExPASy Swiss-Prot
Match: P25071 (Calmodulin-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=CML12 PE=1 SV=3)

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           F L D NGDG I+ KELR  ++ LG  + KA  + +DM+ E+D D DG
Sbjct: 106 FRLFDKNGDGSITKKELRTVMFSLGKNRTKA--DLQDMMNEVDLDGDG 151

[Close]

BLAST of CaUC06G108570 vs. ExPASy TrEMBL
Match: A0A0A0K8Z4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076830 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MFNLTSS-FTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          MFNLTSS F TFF RN I+SKPFF+KSLNNQKLPSFTTFNHF+LLFNLLDS+GDGKISTK
Sbjct: 1  MFNLTSSLFPTFFHRN-ISSKPFFQKSLNNQKLPSFTTFNHFQLLFNLLDSDGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EAE+MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of CaUC06G108570 vs. ExPASy TrEMBL
Match: A0A1S3CBX8 (calmodulin-like protein 7 OS=Cucumis melo OX=3656 GN=LOC103499032 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.2e-33
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MFNLTSS-FTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          M NLTSS F+TFF RN ITSKPFF+KSLNNQKLPSFTTFNHF+LLFN+LDS GDGKISTK
Sbjct: 1  MLNLTSSLFSTFFHRN-ITSKPFFQKSLNNQKLPSFTTFNHFQLLFNILDSGGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EAE+MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of CaUC06G108570 vs. ExPASy TrEMBL
Match: A0A5A7TEW8 (Calmodulin-like protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002880 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MFNLTSS-FTTFFRRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          M NLTSS F+TFF RN ITSKPFF+KSLNNQKLPSFTT NHF+LLFNLLDS+GDGKISTK
Sbjct: 1  MLNLTSSLFSTFFHRN-ITSKPFFQKSLNNQKLPSFTTSNHFQLLFNLLDSDGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
          EL +FLYRLGYKKLK   EAE+MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKPTMEAEEMVKEMDSDRDG 92

[Close]

BLAST of CaUC06G108570 vs. ExPASy TrEMBL
Match: A0A067JXS4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14512 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-07
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 7   SFTT---FFRRNIITSKPFFKKSLNNQKL-----PSFTTF---NHFELLFNLLDSNGDGK 66
           SFTT     RR +I      K++L++        PSF +    N F+ +FNL+D+NGDGK
Sbjct: 4   SFTTCLSSLRRRVIAKLTKHKRNLSSSTFDFSDTPSFASMEIPNQFKQVFNLIDANGDGK 63

Query: 67  ISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           IS+ +L   L  LG  K KA+ EAE MVKE+D + DG
Sbjct: 64  ISSYDLIELLLCLGCDKSKAKAEAEGMVKELDRNGDG 100

[Close]

BLAST of CaUC06G108570 vs. ExPASy TrEMBL
Match: B9RDE4 (Calmodulin, putative OS=Ricinus communis OX=3988 GN=RCOM_1612330 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 33 PSFTTF---NHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSD 92
          PSF      N F+ +F L+D+NGDGKIS+ EL   L  LG+ K KA +EAE MV+EMD +
Sbjct: 24 PSFAAMEVHNQFKQVFKLIDANGDGKISSCELSELLLCLGFDKSKATSEAEGMVREMDCN 83

[Close]

BLAST of CaUC06G108570 vs. TAIR 10
Match: AT2G41100.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           F L D NGDG I+ KELR  ++ LG  + KA  + +DM+ E+D D DG
Sbjct: 106 FRLFDKNGDGSITKKELRTVMFSLGKNRTKA--DLQDMMNEVDLDGDG 151

[Close]

BLAST of CaUC06G108570 vs. TAIR 10
Match: AT2G41100.3 (Calcium-binding EF hand family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           F L D NGDG I+ KELR  ++ LG  + KA  + +DM+ E+D D DG
Sbjct: 71  FRLFDKNGDGSITKKELRTVMFSLGKNRTKA--DLQDMMNEVDLDGDG 116

[Close]

BLAST of CaUC06G108570 vs. TAIR 10
Match: AT2G41100.4 (Calcium-binding EF hand family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           F L D NGDG I+ KELR  ++ LG  + KA  + +DM+ E+D D DG
Sbjct: 106 FRLFDKNGDGSITKKELRTVMFSLGKNRTKA--DLQDMMNEVDLDGDG 151

[Close]

BLAST of CaUC06G108570 vs. TAIR 10
Match: AT3G17470.1 (Ca2+-activated RelA/spot homolog )

HSP 1 Score: 43.9 bits (102), Expect = 8.1e-05
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 25  KSLNNQKLPSF-TTFNHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMV 84
           K +++ K  SF TT N  + +F LLD NGDG IS +EL   +  LG        +AE+M+
Sbjct: 458 KDISSNKHQSFKTTTNQRDRVFCLLDKNGDGMISIEELMEVMEELG----APGEDAEEMM 517

Query: 85  KEMDSDRDG 93
           + +DS+ DG
Sbjct: 518 QLLDSNSDG 522

[Close]

BLAST of CaUC06G108570 vs. TAIR 10
Match: AT1G05990.1 (EF hand calcium-binding protein family )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAEDMVKEMDSDRDG 93
           FN+ D NGDG I+  EL+  L  LG K+ K   + + M+K++D D DG
Sbjct: 84  FNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDG 131

The following BLAST results are available for this feature:

BLAST of CaUC06G108570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153117.1	3.9e-33	86.02	calmodulin-beta [Cucumis sativus] >KGN46235.1 hypothetical protein Csa_005220 [C...	[more]
XP_008460131.1	8.6e-33	84.95	PREDICTED: calmodulin-like protein 7 [Cucumis melo]	[more]
KAA0040005.1	1.2e-31	83.87	calmodulin-like protein 7 [Cucumis melo var. makuwa]	[more]
XP_039139041.1	2.1e-07	50.67	probable calcium-binding protein CML23 [Dioscorea cayenensis subsp. rotundata]	[more]
XP_012083557.1	1.4e-06	43.30	probable calcium-binding protein CML27 [Jatropha curcas] >KDP28741.1 hypothetica...	[more]

BLAST of CaUC06G108570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25071	2.3e-04	47.92	Calmodulin-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=CML12 PE=1 SV=3	[more]

BLAST of CaUC06G108570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Z4	1.9e-33	86.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076830 PE=4 SV=1	[more]
A0A1S3CBX8	4.2e-33	84.95	calmodulin-like protein 7 OS=Cucumis melo OX=3656 GN=LOC103499032 PE=4 SV=1	[more]
A0A5A7TEW8	6.0e-32	83.87	Calmodulin-like protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A067JXS4	6.7e-07	43.30	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14512 PE=4 SV=1	[more]
B9RDE4	3.3e-06	52.38	Calmodulin, putative OS=Ricinus communis OX=3988 GN=RCOM_1612330 PE=4 SV=1	[more]

BLAST of CaUC06G108570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41100.1	1.6e-05	47.92	Calcium-binding EF hand family protein	[more]
AT2G41100.3	1.6e-05	47.92	Calcium-binding EF hand family protein	[more]
AT2G41100.4	1.6e-05	47.92	Calcium-binding EF hand family protein	[more]
AT3G17470.1	8.1e-05	40.58	Ca2+-activated RelA/spot homolog	[more]
AT1G05990.1	1.4e-04	43.75	EF hand calcium-binding protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 40..68 e-value: 0.0022 score: 27.3
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 43..92 e-value: 1.9E-9 score: 37.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 36..71 score: 13.286007
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 74..92 score: 8.348522
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 40..92 e-value: 6.33151E-10 score: 48.3129
None	No IPR available	GENE3D	1.10.238.10		coord: 14..92 e-value: 7.4E-13 score: 50.5
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 49..61
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 35..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G108570.1	CaUC06G108570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding