CaUC06G108540 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G108540
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein cornichon 4-like
Location	Ciama_Chr06: 2200821 .. 2204471 (+)
RNA-Seq Expression	CaUC06G108540
Synteny	CaUC06G108540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGTATAGTTTGTAATAATTCAATCTTTGAAGTTTAATGAATATATCAGTTTAGTGTTGCTTTATAATTTGTAATCATTTAATGAATATAATAAATAAATTGTTAAGTATTAAATTTAGGAATGTTGTGTTTTATGATGAAATGAACAGAGAAATTTCTCTCGACTGAGAGTGTGATTGTTCGAAAATTGAAAGGTAGAAGAAGAACGAAGGAAAGGCATGCGGAAGCCATGGGAGACCTCTTTGCTTGGCTCTTCAACTTATTCCTCCTCATATTTCTCATTGCCATTCTCGGCTATCAGGTTCTTTCTCTATTCCATCTCTCGCCAATGGCTTGTTTTTTTGTGCCATCTTTCATTCTCGTTGTTGAATGATTTTCTGCTGAAACTGTAGGTTTGCACTTCCGATTAATAGTTTAATTATAGATGAATGTCGAACTTCCGACTCCTTTCTTTTCTTGAAATAGAGGAAGTTTACAGAGAGATAGTAGTAACAAAATGTGTGTGAACGAAGATTGCAAGAAGTAATATGTCGAACAAGATTATTCAAGCTGTATCAAAATTGTCTCTGCAAAAAAGTCCGTTCTAAGGGCTTTTCTTGCTGCTTTAATTACACAAATTAAAGCGTATTCATGCAAATCTTTTCTGGTTGCTTTTAACTGTTTATGTTTGCATGATTAGAAATCTGCCTAACAAAACGGAACAAAAAAAATCATGATTTGAGTTACTGCTGTGCTGCAGATTATATGCTTGGTGGATTTGGAGTCTGACTATATCAATCTCTTCGATTCGACATCTCGGATGAACAGAGTTATAATGTTGGAATTTATTGCCCAGGCAGTTTTCAGCTTTGTTCATCTTCCAGCACCGCATTGGTTCATGTTTTTGGTGTCACTTCCATGCCTATTCTTCAATGTCAGACTGTAGGTTCTGGTTTCCTGAATCCATTAACTCTACTGAACAACATTATGTTACTATAGGTCTCTGGGATCATTATTGAAGGATGGTACATGAAATTCAACTGGCTATGAAAGCTTGATATTTCAAAAACGGATTTTCTCGTCCAACTGACCATGGTTTGTTTGGTAGTGATTTTACATTGAGTTTGAAAAATGTTGTTTAGAGGTTTGAAAGTTATATGCCTTTTATATGCTTGACATTTCAGAATAAGTTGATTTTGAGGGACAGAAGCTAAACTGGCTTGAATATTGTAAATTCGTAGTTGATTGGTTAGTCCCTGATATAGCATATGGAAAAGATCTGCCTTAGGAAGAAATATAATGTAGAACTAAATGAACTATTTTCTTCCCAATAAAGACAGTTGAGTGGATTCTAAACATCTGATTTGTTTGAGAGGTAATTGATTTCTATTTCATGATCTGATGGGCTGATTACAATTTGGTTTGTATTTTCTAAGAGAACCCAGTAATTGTAAAGAAAAGCCTAGTGTAGTTTTTGGACAATAGTAATTTGGTTTCAAACTTCTATCTTTTGAGTTGGTCTAGTTACTTATTGGATCATGTGATAAATAAAAGGAACCTTTGGGAGAATGGGCTTGAACTCCGTGGTAGTCACTTAGTTGGGATATTGAAATTCTAATTCCTTCGAGAGAATGACAACCAAATATTAGATTGTTGAGGATCCCACGTTAGAAAATTCAAGGGACTTCCTCTTGTTGCCAGATGGTTCTGAGATGGACTCCATGTTATCTAATATACATAAAAATTGTTCTCTTTCAACTTTGCTTGAGCACATTTGAATTCTGTACTCATGAATTTCCTTGATCTAACACAGTCATAAGGCTCGGTCTTTTAAATTCTAAATCTTGGCCTTGCCTTAATTCCATGGTGCGAAATACAAATAAATGCAACTTGACAACAGAGATTAAATCACTTGGAAGGATTCTTATTTGAGTGGAATTTGTAACCCCATTATTTTCAGGTATATTTGGAAAGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGCGAGAAAAAGCAACGCTTTCTTAAGATGATTTATTTTCTTATACTATTTGTTATGGTACATACATATACTGATACTTTTGACATTTATGATGCTGATTTTATGTTCATTATAATCTTTAAATTGTGTAACAATATTTATTACTTGAATTTGTTTGCAGGATGATTTGGAGCGTAGGAACTTTGGAGAAGAACTGGGATAGTTAAGTATGTTCTAATGAGTTTGTTTATTTTAAAATCTGATGAACTTATTACTAACACTGTACATTATAGAAAGACATGGATTGTGGATAGAAATAAGCAACAAAAATGCCTCTGCTTTCCTTTGAGTTTAAAAGGTTTGTGTATTGATTATACCGCTACATGGAGGATTTACCAAAGCTATGACTTCATAAAATAATAAATTTAAAATTGTATTTTCTTGAACTTTGAGGGGTTTTTTTTGTTTGTCTTTCAACTGTATTCAATGTCCCTAGACATTAATAGTGTCTAATAGACCAATGTTGTGTCTAATAGATCTCTAAATTTTCAATCATGTATCTAGTTGTCCTTTGACTTATTCAATAGCTTTTAAAAATTCACTATCTACAAGACACAAAATTAAAATTTATGATTCATAAAATTTTGAATATGTCGAGGCTTTATTAAACATAGTAAGACTCTTGAGACACCAAATATTAATTGCCCTTCAGGTTATAACTTTGAAGATGAAGAAGGGTTGATCACGTTTTTGTTCTCTATTCTCTCTTTGGTTACTCTAAGCAAAGCAACATTCCTTGTTGATTGTAATCCATCTTTAACAAGTTCACATTCGAGGTAGTTGAATTAATTTTGGGGAAGAATAGGCTTACATGATTCACACCAAAGTCATGTCGAATTGTTTTCAAGGTAGCGGTGGTCCACGACACAACGATTTATTTATAATCAACACAATTTTAATAATCTCTCATCCTCATTATCAATATAAACCTTTATTTGTTAACTCATTATCCCATTTGTGTTTATAAACCAAACAAATAGGAATGCCACAAAGGAAATGCTAACATTAATGATTGGTAATTTACATATTCTAATTTGTGTTCGTAAAACACAAAAGAAATAGGAATGCACAAGATGATCCTAAGAGTAAATTAGTAAGTGATGCTAATAATTAACATATTGTAACTCTGACAATGAATCTAAAGAAACCTATCACAAATCAATTCTTCCCTCCAAAAAGCATTCATCATGTCGATAAACTCTTGAGCCTTCTTCTCTATATCATCTTGAAGCCCTTCTTCACAATCTTCTTCAAAACTATCATCAATACAAATTTCATCACTACTATTCATCTCATTGCTATGTCTACTACAATCTTTACAGCTTTCTACCAGTTCTTCTATCCCTTCTCCTTTGCTCGATAACCGCTTAAACTTCTCGCTGGACAGGATGAAAATGATGGCATTAGATGCAAGGAATACCGATGCACGACTCGATTTCACCACCCGAATGATTTCGACCAATTGAAGGACGATGTTTCGGTGCTTGGAACTCACCAAGGGGGACAAGAAATAGGAGAAGAAGAAGAAGGAAAGGAAGAAACTGGATGCAATGATGATGCAAAGAAAAAATGCTTGAAGTTTCTTCATGCCCCTTCAATCTAAACAACAACCA

mRNA sequence

ATGTACGAGAAATTTCTCTCGACTGAGAGTGTGATTGTTCGAAAATTGAAAGGTAGAAGAAGAACGAAGGAAAGGCATGCGGAAGCCATGGGAGACCTCTTTGCTTGGCTCTTCAACTTATTCCTCCTCATATTTCTCATTGCCATTCTCGGCTATCAGATTATATGCTTGGTGGATTTGGAGTCTGACTATATCAATCTCTTCGATTCGACATCTCGGATGAACAGAGTTATAATGTTGGAATTTATTGCCCAGGCAGTTTTCAGCTTTGTTCATCTTCCAGCACCGCATTGGTTCATGTATATTTGGAAAGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGCGAGAAAAAGCAACGCTTTCTTAAGATGATTTATTTTCTTATACTATTTGTTATGGATGAAAATGATGGCATTAGATGCAAGGAATACCGATGCACGACTCGATTTCACCACCCGAATGATTTCGACCAATTGAAGGACGATGTTTCGGTGCTTGGAACTCACCAAGGGGGACAAGAAATAGGAGAAGAAGAAGAAGGAAAGGAAGAAACTGGATGCAATGATGATGCAAAGAAAAAATGCTTGAAGTTTCTTCATGCCCCTTCAATCTAAACAACAACCA

Coding sequence (CDS)

ATGTACGAGAAATTTCTCTCGACTGAGAGTGTGATTGTTCGAAAATTGAAAGGTAGAAGAAGAACGAAGGAAAGGCATGCGGAAGCCATGGGAGACCTCTTTGCTTGGCTCTTCAACTTATTCCTCCTCATATTTCTCATTGCCATTCTCGGCTATCAGATTATATGCTTGGTGGATTTGGAGTCTGACTATATCAATCTCTTCGATTCGACATCTCGGATGAACAGAGTTATAATGTTGGAATTTATTGCCCAGGCAGTTTTCAGCTTTGTTCATCTTCCAGCACCGCATTGGTTCATGTATATTTGGAAAGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGCGAGAAAAAGCAACGCTTTCTTAAGATGATTTATTTTCTTATACTATTTGTTATGGATGAAAATGATGGCATTAGATGCAAGGAATACCGATGCACGACTCGATTTCACCACCCGAATGATTTCGACCAATTGAAGGACGATGTTTCGGTGCTTGGAACTCACCAAGGGGGACAAGAAATAGGAGAAGAAGAAGAAGGAAAGGAAGAAACTGGATGCAATGATGATGCAAAGAAAAAATGCTTGAAGTTTCTTCATGCCCCTTCAATCTAA

Protein sequence

MYEKFLSTESVIVRKLKGRRRTKERHAEAMGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFVHLPAPHWFMYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVMDENDGIRCKEYRCTTRFHHPNDFDQLKDDVSVLGTHQGGQEIGEEEEGKEETGCNDDAKKKCLKFLHAPSI

Homology

[Close]

BLAST of CaUC06G108540 vs. NCBI nr
Match: XP_008460127.1 (PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 7.9e-42
Identity = 97/136 (71.32%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNL LLIFLI ILGYQIICLVDLESDYINLFDSTSR+NRV+MLEFI Q VFS
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILF 149
           FVHL A HWFM              YI KEHLADVTEIYN IGCEKKQRFLK+IYFL+L 
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVLL 120

Query: 150 VMDENDGIRCKEYRCT 152
            +     I C +Y  T
Sbjct: 121 FISLIWYIPCTQYFST 136

[Close]

BLAST of CaUC06G108540 vs. NCBI nr
Match: XP_008460129.1 (PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-40
Identity = 93/119 (78.15%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNL LLIFLI ILGYQIICLVDLESDYINLFDSTSR+NRV+MLEFI Q VFS
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLIL 135
           FVHL A HWFM              YI KEHLADVTEIYN IGCEKKQRFLK+IYFL+L
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVL 119

[Close]

BLAST of CaUC06G108540 vs. NCBI nr
Match: XP_022152825.1 (protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831.1 protein cornichon homolog 4-like isoform X1 [Momordica charantia])

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-39
Identity = 88/119 (73.95%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNLF+LIFL+ ILGYQ ICLVDLESDYINLFDSTSR+NRV++LEF+AQAVF 
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLIL 135
           FVHL A HWFM              Y+ KEHLADVTEIYNQIG EKKQRF+KM+YF+IL
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYFIIL 119

[Close]

BLAST of CaUC06G108540 vs. NCBI nr
Match: XP_022152838.1 (protein cornichon homolog 4-like isoform X2 [Momordica charantia] >XP_022152841.1 protein cornichon homolog 4-like isoform X2 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-34
Identity = 81/114 (71.05%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNLF+LIFL+ ILGYQ ICLVDLESDYINLFDSTSR+NRV++LEF+AQAVF 
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMI 130
           FVHL A HWFM              Y+ KEHLADVTEIYNQIG EKKQR +  +
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRMISSV 114

[Close]

BLAST of CaUC06G108540 vs. NCBI nr
Match: XP_008375821.1 (protein cornichon homolog 4-like [Malus domestica] >TQE03377.1 hypothetical protein C1H46_011028 [Malus baccata])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-23
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 33  LFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFVH 92
           L+ WL + F ++ L+ ILGYQ++CLVDLE DYIN +DS+SR+N VI+ EFI Q V  F+ 
Sbjct: 4   LWTWLLSFFFILALLCILGYQLVCLVDLEYDYINPYDSSSRINNVILPEFIIQGVLCFIL 63

Query: 93  LPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 138
           L A HWFM              Y+ + HL DVTEIYNQ+  EKKQRFLK+ Y L+LF++
Sbjct: 64  LIARHWFMLFMALPHLYYNVNLYMTRRHLVDVTEIYNQLSWEKKQRFLKIGYLLVLFIL 122

[Close]

BLAST of CaUC06G108540 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-21
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGD++ WL + F LI L+ I+ YQ++CL DLE DYIN +DS SR+N V++ EFI Q V  
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 134
             +L   HWFM              Y  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 118

[Close]

BLAST of CaUC06G108540 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-17
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MG+++ W+ +  +LI L+ ++ YQ+I L DLE DYIN +DS SR+N V++ E I Q    
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 134
             +L   HWFM              Y  K+HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIIL 118

[Close]

BLAST of CaUC06G108540 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 32  DLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFV 91
           DLF W+ + F+ + L+A + YQ+ICL DLE+DY+N F++++R+NR+++ EFI Q     +
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 92  HLPAPHW--------------FMYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 138
            L   HW               +Y  + +L DVTE++  I  EKK R+ K+ +++ LF+M
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

[Close]

BLAST of CaUC06G108540 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-15
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDL  W+ +   L  LI I+ YQ+ CL DLE D IN +D +SR+NR+++ EF  Q +  
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKM 129
             ++   HWFM              Y+ +EHLADVTE+YN    E+K+R  K+
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKI 113

[Close]

BLAST of CaUC06G108540 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 52  YQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFVHLPAPHWFM----------- 111
           + ++CL DLE DYIN +DS SR+N V++ EFI Q V    +L   HWFM           
Sbjct: 15  FHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYN 74

Query: 112 ---YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 134
              Y  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 75  FHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 110

[Close]

BLAST of CaUC06G108540 vs. ExPASy TrEMBL
Match: A0A1S3CBU0 (protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-42
Identity = 97/136 (71.32%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNL LLIFLI ILGYQIICLVDLESDYINLFDSTSR+NRV+MLEFI Q VFS
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILF 149
           FVHL A HWFM              YI KEHLADVTEIYN IGCEKKQRFLK+IYFL+L 
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVLL 120

Query: 150 VMDENDGIRCKEYRCT 152
            +     I C +Y  T
Sbjct: 121 FISLIWYIPCTQYFST 136

[Close]

BLAST of CaUC06G108540 vs. ExPASy TrEMBL
Match: A0A1S3CD35 (protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 5.5e-41
Identity = 93/119 (78.15%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNL LLIFLI ILGYQIICLVDLESDYINLFDSTSR+NRV+MLEFI Q VFS
Sbjct: 1   MGDLFAWLFNLLLLIFLIVILGYQIICLVDLESDYINLFDSTSRINRVVMLEFITQGVFS 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLIL 135
           FVHL A HWFM              YI KEHLADVTEIYN IGCEKKQRFLK+IYFL+L
Sbjct: 61  FVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVL 119

[Close]

BLAST of CaUC06G108540 vs. ExPASy TrEMBL
Match: A0A6J1DF23 (protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-39
Identity = 88/119 (73.95%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNLF+LIFL+ ILGYQ ICLVDLESDYINLFDSTSR+NRV++LEF+AQAVF 
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLIL 135
           FVHL A HWFM              Y+ KEHLADVTEIYNQIG EKKQRF+KM+YF+IL
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYFIIL 119

[Close]

BLAST of CaUC06G108540 vs. ExPASy TrEMBL
Match: A0A6J1DFZ1 (protein cornichon homolog 4-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 7.7e-35
Identity = 81/114 (71.05%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDLFAWLFNLF+LIFL+ ILGYQ ICLVDLESDYINLFDSTSR+NRV++LEF+AQAVF 
Sbjct: 1   MGDLFAWLFNLFILIFLLLILGYQNICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMI 130
           FVHL A HWFM              Y+ KEHLADVTEIYNQIG EKKQR +  +
Sbjct: 61  FVHLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRMISSV 114

[Close]

BLAST of CaUC06G108540 vs. ExPASy TrEMBL
Match: A0A540MX74 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011028 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-24
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 33  LFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFVH 92
           L+ WL + F ++ L+ ILGYQ++CLVDLE DYIN +DS+SR+N VI+ EFI Q V  F+ 
Sbjct: 4   LWTWLLSFFFILALLCILGYQLVCLVDLEYDYINPYDSSSRINNVILPEFIIQGVLCFIL 63

Query: 93  LPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 138
           L A HWFM              Y+ + HL DVTEIYNQ+  EKKQRFLK+ Y L+LF++
Sbjct: 64  LIARHWFMLFMALPHLYYNVNLYMTRRHLVDVTEIYNQLSWEKKQRFLKIGYLLVLFIL 122

[Close]

BLAST of CaUC06G108540 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGD++ WL + F LI L+ I+ YQ++CL DLE DYIN +DS SR+N V++ EFI Q V  
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 134
             +L   HWFM              Y  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 118

[Close]

BLAST of CaUC06G108540 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-18
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MG+++ W+ +  +LI L+ ++ YQ+I L DLE DYIN +DS SR+N V++ E I Q    
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 134
             +L   HWFM              Y  K+HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIIL 118

[Close]

BLAST of CaUC06G108540 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-17
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 32  DLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFV 91
           DLF W+ + F+ + L+A + YQ+ICL DLE+DY+N F++++R+NR+++ EFI Q     +
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 92  HLPAPHW--------------FMYIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLILFVM 138
            L   HW               +Y  + +L DVTE++  I  EKK R+ K+ +++ LF+M
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

[Close]

BLAST of CaUC06G108540 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-16
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 30  MGDLFAWLFNLFLLIFLIAILGYQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFS 89
           MGDL  W+ +   L  LI I+ YQ+ CL DLE D IN +D +SR+NR+++ EF  Q +  
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 90  FVHLPAPHWFM--------------YIWKEHLADVTEIYNQIGCEKKQRFLKM 129
             ++   HWFM              Y+ +EHLADVTE+YN    E+K+R  K+
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKI 113

[Close]

BLAST of CaUC06G108540 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-15
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 52  YQIICLVDLESDYINLFDSTSRMNRVIMLEFIAQAVFSFVHLPAPHWFM----------- 111
           + ++CL DLE DYIN +DS SR+N V++ EFI Q V    +L   HWFM           
Sbjct: 15  FHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYN 74

Query: 112 ---YIWKEHLADVTEIYNQIGCEKKQRFLKMIYFLI 134
              Y  ++HL DVTEI+N +  EKK+R  K+ Y ++
Sbjct: 75  FHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVL 110

The following BLAST results are available for this feature:

BLAST of CaUC06G108540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460127.1	7.9e-42	71.32	PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo]	[more]
XP_008460129.1	1.1e-40	78.15	PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo]	[more]
XP_022152825.1	6.3e-39	73.95	protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831....	[more]
XP_022152838.1	1.6e-34	71.05	protein cornichon homolog 4-like isoform X2 [Momordica charantia] >XP_022152841....	[more]
XP_008375821.1	1.3e-23	52.10	protein cornichon homolog 4-like [Malus domestica] >TQE03377.1 hypothetical prot...	[more]

BLAST of CaUC06G108540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W04	4.7e-21	44.07	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	7.0e-17	39.83	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q9C7D7	2.7e-16	36.67	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]
Q9SZ74	6.6e-15	40.71	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q3EDD7	1.9e-14	41.67	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]

BLAST of CaUC06G108540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBU0	3.8e-42	71.32	protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A1S3CD35	5.5e-41	78.15	protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A6J1DF23	3.0e-39	73.95	protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DFZ1	7.7e-35	71.05	protein cornichon homolog 4-like isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A540MX74	6.1e-24	52.10	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011028 PE=3 SV=1	[more]

BLAST of CaUC06G108540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12390.1	3.3e-22	44.07	Cornichon family protein	[more]
AT1G62880.1	5.0e-18	39.83	Cornichon family protein	[more]
AT3G12180.1	1.9e-17	36.67	Cornichon family protein	[more]
AT4G12090.1	4.7e-16	40.71	Cornichon family protein	[more]
AT1G12340.1	1.4e-15	41.67	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 33..140 e-value: 1.8E-23 score: 94.0
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 34..137 e-value: 5.0E-20 score: 72.0
None	No IPR available	PANTHER	PTHR12290:SF22	CORNICHON FAMILY PROTEIN	coord: 30..137
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 30..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G108540.1	CaUC06G108540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane