CaUC06G108480 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G108480
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	40S ribosomal protein S13
Location	Ciama_Chr06: 2151630 .. 2153961 (-)
RNA-Seq Expression	CaUC06G108480
Synteny	CaUC06G108480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCCATAGGCCTAGGCCCAAATTTCCGAAATCAAAATCGAAACCCTAAAAGCCGCCATTGTTTTGCAGTGTTTCCTTTCAGCAAAGGAGCAGGCGAAGTTGTAGTTCAACCTCTGAAGATCGCAAGCCGTCTCTTCCCCACGCGCCGTCGCAATGGGTCGTATGCATAGTCGAGGGTTTGTATTTACTTTCAGTGGAGAAATCTTGCTTTTAAGCTTTATCGAAAAATCTGTCAACCACTTCCAAATGGTTTTTTTCTTCTTTTTTTACTCTGCTTCTTTGCATTTGCAGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAGAGGACGCCGCCAAGTTGGTTGAAGATCTCTTCGCAGGATGTGAGAATTCCTCGCCAAGTTTTTGTTTTTATTTTTATTTTTATTTTATTATTATTTTGGGTTGGGCTTCGATCGTTATGATTGATTGGAAATATAAAACTATGGAATGGAAAATGTGTGATAATATGTAGATTTCATCTATGATGTGGAGCCATTCAATCATGAGTTAATATCGAGGTTTTCAATGTTTTTATAATGTTTCAGTTTTGTGATGGTTCAGTTCTTCAGCAGGAAAATCCCCTAGGTTTTTATTCTGTGATTGGCAAAAAAATTGAAATTGCAGTTGTAAATTTAATGGAGCATGGTAACATGTTTTTGAGTCATCTGAGTGCCAAGTTTGATGGTTGCTCTTGAATGTCATTTTCAATTTTAGTCATTCTCAATGGAGGTTAATTTCTGTACTATCTCTAGAAATTAATGTCTTACTCTATAACCTTTCAGGTTGCCGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAGAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGTGAGTCCCATCTACCCTTCCTCCATTGAGTTTATTCTCGTTTATATTTGAGTCGAATGATTATGTGATTTTTATGTCCATTTTTTCTTCATTGGCTCAGGTCTAGCACCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGACAAGGATTCGAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCTCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAGTAAGTATTTTGAGGCACAGAAGAACACGAATTGTTTACTACACTTTTGCATGAAAATGTTGCATAGCGTTGATTAAGATCCTACTCTCACATGCTGCTGATCTTTAGCTTCTAAATTGCCTGTCAACTTCTGGAAAGAGACGGTTAAAAGAGAAATTGAGTATAAAGGATGATAACCGGTGAATACCTGGTCGGTTTCAGTATCAAAATGGCAACTGGATCTTCTTTTTCTTTTTGAGTTCAACAAATGGGGATGGTGGGGGATTGATTTAATCTTAGGGGGAGGTATAGGTGCATGGCAAAAACTAGAGTTTATCTCATAATATGAACTAGTCTGAAATGTCGCTTTGTGATGTTTCAATACTGTATGGTTCAATTCTCGTTGCATGTTGGATTGCCAAACTTTCAAGTGTCTACACAGAGTTGCATCTAGACTTGGGAATCTACAGAATTGCACCACGTCCATTCTTTGCATTATGCTCATCACCCACCCATCTAACTTAAATAGTATTTACTATACTTAATTGTAGGTTATAAATAGTATGCACCACTATCATATTTGGTGCTCCAAACATATAGTAGGCTATAATAACCTTCTTCACCAACTTCTAGTCGGTGCCTGAATGGCTCGTAAGTGTATATAATTTCTCTAATTCTTACCATTAGGACAGGACATTTTCGAGGGTTTCAGACCACTAAATGTTGAAATGTTGTTGACATATATAAACTTGTTTGTTTATGATGTTTTTACATCTTTTGGTTGTGAAATTGTTTAAGCTTTGTCAATTTTGAGCTGTCTAATTGAATGTGGGTGTTATTTTTTTTTACAGTGAATCCACCACGGCCAGCACCCTCGTGGCTTAGAAGCAAGTTTTTGGTGATTACTAAGAGAAACTAAGGAGTTATTCTGGGGATTCAAGTTTTTTTGTTTAGTACTATGTTTAATGCTTTATCTGTACTCACCCCGGCAGTTATCCATCTTGTGCCTGACTTTGGATTCGTTGAATTTTTGTTAATCTTATTGCAAATTTGATTTCTGCAATGCTTTTGTGAATGACTTGCCTGTTAAATTGCTCGTATGGGTGCAAGTTTAAAGTGGTT

mRNA sequence

GGCCCATAGGCCTAGGCCCAAATTTCCGAAATCAAAATCGAAACCCTAAAAGCCGCCATTGTTTTGCAGTGTTTCCTTTCAGCAAAGGAGCAGGCGAAGTTGTAGTTCAACCTCTGAAGATCGCAAGCCGTCTCTTCCCCACGCGCCGTCGCAATGGGTCGTATGCATAGTCGAGGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAGAGGACGCCGCCAAGTTGGTTGAAGATCTCTTCGCAGGATTTTTGTGATGGTTCAGTTCTTCAGCAGGAAAATCCCCTAGGTTTTTATTCTGTGATTGGCAAAAAAATTGAAATTGCAGTTGTTGCCGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAGAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGTCTAGCACCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGACAAGGATTCGAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCTCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATGAATCCACCACGGCCAGCACCCTCGTGGCTTAGAAGCAAGTTTTTGGTGATTACTAAGAGAAACTAAGGAGTTATTCTGGGGATTCAAGTTTTTTTGTTTAGTACTATGTTTAATGCTTTATCTGTACTCACCCCGGCAGTTATCCATCTTGTGCCTGACTTTGGATTCGTTGAATTTTTGTTAATCTTATTGCAAATTTGATTTCTGCAATGCTTTTGTGAATGACTTGCCTGTTAAATTGCTCGTATGGGTGCAAGTTTAAAGTGGTT

Coding sequence (CDS)

ATGGGTCGTATGCATAGTCGAGGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAGAGGACGCCGCCAAGTTGGTTGAAGATCTCTTCGCAGGATTTTTGTGATGGTTCAGTTCTTCAGCAGGAAAATCCCCTAGGTTTTTATTCTGTGATTGGCAAAAAAATTGAAATTGCAGTTGTTGCCGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAGAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGTCTAGCACCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGACAAGGATTCGAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCTCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATGAATCCACCACGGCCAGCACCCTCGTGGCTTAG

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Homology

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BLAST of CaUC06G108480 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 151/178 (84.83%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
           AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. NCBI nr
Match: PPS12785.1 (hypothetical protein GOBAR_AA07838 [Gossypium barbadense])

HSP 1 Score: 284.6 bits (727), Expect = 5.7e-73
Identity = 152/188 (80.85%), Postives = 159/188 (84.57%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFC-----DGSVLQQENP-----LGFYSV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD             ++NP     L +   
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVVLEKHESLKPYYKQNPPRSLQLDYLPR 60

Query: 61  IGKKIEIAVVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 120
              ++  + V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE
Sbjct: 61  RYVELSPSKVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 120

Query: 121 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 179
           IPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES
Sbjct: 121 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 180

[Close]

BLAST of CaUC06G108480 vs. NCBI nr
Match: XP_004153746.1 (40S ribosomal protein S13 [Cucumis sativus] >XP_008460113.1 PREDICTED: 40S ribosomal protein S13 [Cucumis melo] >KGN46246.1 hypothetical protein Csa_005737 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 9.7e-73
Identity = 150/178 (84.27%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
           AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 283.9 bits (725), Expect = 9.7e-73
Identity = 150/178 (84.27%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKIS+QD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
           AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. NCBI nr
Match: XP_010053902.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal protein S13 [Eucalyptus grandis] >XP_030468523.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030468524.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030529924.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030529925.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030544418.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_031376603.1 40S ribosomal protein S13 [Punica granatum] >XP_031381691.1 40S ribosomal protein S13 [Punica granatum] >KAF3439993.1 hypothetical protein FNV43_RR18271 [Rhamnella rubrinervis] >KAF8020424.1 hypothetical protein BT93_G0976 [Corymbia citriodora subsp. variegata] >PON34614.1 Ribosomal protein [Parasponia andersonii] >KAF3440239.1 hypothetical protein FNV43_RR18522 [Rhamnella rubrinervis] >KAF8020425.1 hypothetical protein BT93_G0977 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 150/178 (84.27%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  EENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-74
Identity = 148/178 (83.15%), Postives = 149/178 (83.71%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  EENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.9e-71
Identity = 143/178 (80.34%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  DESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.2e-71
Identity = 143/178 (80.34%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISSQD                           V
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  DETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.2e-71
Identity = 142/178 (79.78%), Postives = 146/178 (82.02%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  DESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-64
Identity = 132/178 (74.16%), Postives = 138/178 (77.53%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK ++ D                           V
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIK
Sbjct: 61  EEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 KAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy TrEMBL
Match: A0A4D8ZRJ3 (Small subunit ribosomal protein S13e OS=Salvia splendens OX=180675 GN=RP-S13e PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.5e-74
Identity = 152/178 (85.39%), Postives = 157/178 (88.20%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD      L     L +  +I  ++   VV
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVLGMGELHNLVIL-YRLLINTRL---VV 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK HGLAPEIPEDLYHLIK
Sbjct: 61  EENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKGHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 174

[Close]

BLAST of CaUC06G108480 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 151/178 (84.83%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
           AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 151/178 (84.83%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
           AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 151/178 (84.83%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
           AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. ExPASy TrEMBL
Match: A0A2P5YB27 (Ribosomal_S13_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07838 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 152/188 (80.85%), Postives = 159/188 (84.57%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFC-----DGSVLQQENP-----LGFYSV 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD             ++NP     L +   
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVVLEKHESLKPYYKQNPPRSLQLDYLPR 60

Query: 61  IGKKIEIAVVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 120
              ++  + V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE
Sbjct: 61  RYVELSPSKVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 120

Query: 121 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 179
           IPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES
Sbjct: 121 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 180

[Close]

BLAST of CaUC06G108480 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-72
Identity = 143/178 (80.34%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  DESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CaUC06G108480 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 268.1 bits (684), Expect = 5.1e-72
Identity = 142/178 (79.78%), Postives = 146/178 (82.02%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDFCDGSVLQQENPLGFYSVIGKKIEIAVV 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QD                           V
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQD---------------------------V 60

Query: 61  AENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120
            E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIK
Sbjct: 61  DESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 120

Query: 121 KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 179
           KAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 KAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of CaUC06G108480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143980.1	4.3e-73	84.83	40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom...	[more]
PPS12785.1	5.7e-73	80.85	hypothetical protein GOBAR_AA07838 [Gossypium barbadense]	[more]
XP_004153746.1	9.7e-73	84.27	40S ribosomal protein S13 [Cucumis sativus] >XP_008460113.1 PREDICTED: 40S ribos...	[more]
XP_038906798.1	9.7e-73	84.27	40S ribosomal protein S13 [Benincasa hispida]	[more]
XP_010053902.1	1.7e-72	84.27	40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal pro...	[more]

BLAST of CaUC06G108480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.8e-74	83.15	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	1.9e-71	80.34	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	3.2e-71	80.34	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	7.2e-71	79.78	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	1.3e-64	74.16	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of CaUC06G108480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D8ZRJ3	5.5e-74	85.39	Small subunit ribosomal protein S13e OS=Salvia splendens OX=180675 GN=RP-S13e PE...	[more]
A0A6J1KV63	2.1e-73	84.83	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ...	[more]
A0A6J1HJL3	2.1e-73	84.83	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=...	[more]
A0A6J1CQC4	2.1e-73	84.83	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE...	[more]
A0A2P5YB27	2.8e-73	80.85	Ribosomal_S13_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOB...	[more]

BLAST of CaUC06G108480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	1.3e-72	80.34	ribosomal protein S13A	[more]
AT3G60770.1	5.1e-72	79.78	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 97..176 e-value: 2.9E-15 score: 66.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 101..172 e-value: 7.0E-15 score: 55.0
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 125..155
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 97..170 e-value: 8.13483E-28 score: 97.5738
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..87 e-value: 1.5E-26 score: 104.2
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..33 e-value: 1.7E-12 score: 47.2 coord: 59..87 e-value: 1.7E-11 score: 44.0
None	No IPR available	GENE3D	4.10.860.130		coord: 62..109 e-value: 4.2E-29 score: 102.0
None	No IPR available	GENE3D	1.10.287.10		coord: 110..178 e-value: 1.3E-40 score: 139.5
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..35
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 54..178
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 54..178
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..35
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..176 score: 29.452444
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 93..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G108480.1	CaUC06G108480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome