CaUC06G108080 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G108080
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 1742040 .. 1744554 (-)
RNA-Seq ExpressionCaUC06G108080
SyntenyCaUC06G108080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGTGAGGGGCACCGCTCATTAGACAAACTAATATTGAAAGGCAAACGTACAACAAGAAGGGAGGATTAATACTGGAGGGGGAAAAATCCTTAGTTAGCCGAAATCTAGAGAAGGCAAATCGCAAAAGCTCTAATGTCATTCCGACTTATCCACACGTCCATTTTTTTCTTGAGAGGTCTTTGTGGGTTTCTTCCTCTCTTTCTAGCTCTCCCACAAAGAGGGGCACAGCAGGCAATATCAAAATTCCACCACCAAGATTTTTTCCACGAAAGTCTAATGGTAGGGTAACGAATGAAAAAGAGAATGACCATTGATGTTCTTTCAAAGAGCCACCACCACAATGAATTGAATTTTTTTCATGCGACACAATGACACGATGTTTGGAATTTGGATGTGGAACAGGGTGAACTTTAATGAATTTTTAGTGAGAAGGATGAAAAGAAAAAAAATAGACAAACTTTCAAAGGCTATTATGTATTTTGATAGCCTGCCAATGATGTTGTAAGCAAAAATTAGTAACAAAATTAATTTTAAGAACATAATTTCTAGATTGATCCTTGTCCTATTTCTAGATCAAACTAGCTTTGACTTTGCATCATAAGACTCAGATCACCAGGGAAATTATCAAATGAAGCATCTATTGAGTACTTCTACAACGATAATTTGAAGATCCTACCCAATAAAGAATGGTATATTATTTAAAGATTAAGAGAGAGGAGAAGAAGAGAGAAAGAAAGAAAGGAAAGAACCTGGTAACATCATAAAGATCCTAAGCAAATATTTCTAACATTAAGCAAAAGAAAGCCCCACAAATATCGTAAAGATCCTAACCAAATACTTCCTGCATAAAGCCTGGATGCTGAGGGCTACTTAAATATAATGGCATGAATAGGAAGAAAATACCTATTGACAATAAGAGGTAATGCCTCGCATCCTCCAAACTTTGCACTGCAACAAGAGCGAGCGGAATTACAAAGTGAAGTGATGCTTTTTCATGAACATGCCACCCAAATAGAAAACCACATGCATAAGCATAGGCCACCCATCTAGTGATCATTCGTGGTTGAGGATCTTTGAAAGCTTTGATTAGGCAAGGAGACAAAGCTAGCAGCACCACAACAAAGGTTGTCAAGGGAGTGATCTGCCATTCAATGGATTCACATATCAAGGGGAAAAAAAGGGAGTAGTAATGTAGGGTTAACTACAATTCACTACTATCCCAATTATCTGCACCAAGCTTGTTTTAGTTTATGATTGAAAATTACCTGAGGTAGCACAGAAAACGGAGATGAATCACCAACTAGACCACTGGTAAATGAACCTGTTGGTATCTTGATACTAAATCCAAGTTTTCTGAGCAAGATTGACAGTCCTTTATCCAGTAAAATATAAAAAACCCAGAAATTTGGAGCCCAATATGCATGGCAAAGTCCCCTGCCGAAAGGAAACATGCGTTGGATGACTTGCTGTATCTGCAAGGAATATATTAGTAGTCATAAATTTTTTCAGGGAATCATGGTTATTAGCAAAGTTTTTTTTTCCTGGCAATACAAATTTGGGGATATAACAAGAGGTCTCTGCTAAGAATCTGTAGCTGAAAATAGAACGTTGCAGTCAGTACATGTTGATTAGTTTCCTGTAGAGAAACTATCAATTTGAGGTAGTATGTCAGGTAATGTGCATAAAACTTGCGGCAGTGCAATCTCAAAAGAGAGGTGAATCTCGAACATAGGAAGTTAAGAGATTGAATGAAAAGTATCTCTAATCCCCACTAAACCAACAAGTTTAAGGTTATAATATTGTAACATTTTCCTTCATTTCTAGGTCTAGAAATTAGCACAAAACACAACAAACGACTGTCAAAGTCAACGAATGAGGGAATCTCATTATGAGCTTGAACAAAAAACCTTTAATACTATGTTAAATCACCCCACACTAAACCTCAAAAACTGAAGTTGTGGTATTGAAAAAGGATCTCTTATCCTTCCTTGATACACTGCCCACCAGATTCCTAACCTCAACAGTCCTCTTTCCGCCCTTTCGGGATAACTTATGCTTGACTGATGACTAGATGCAAGTGGCAGTTAAGTTCCATCTAAAATCCATGCATTGAACTGGGAGTATAGAATACAACATGAAAAAGCAAATGTACCCTTATTTTTGTAAGAGTTCAACAACATTTGGGGGTGGGGATTCGAACCTGTACATGCTGATAAGGTTATTAATATATACATATTTTTTAGTACAACAACTAAAACATGTCAATTACTGTTGAGCTAAGCTCACTTTAGTCATGTTGATCAGGTTATTAACCTACAAGCAAATTGAACTTCTAAACATTACATTTGTCTACCACAGACAAAACTTCAAGCTCAAACATAGATTTTATACCTGACCATGATAGATAAACGGCCCATAAGCAGCAGCGAAAACTGCCACAACAACAGATCCCATAACTGTAAGCCGCCCAAAACCTCTGACAAATCCTCCCCGACAGTAATGCCTTAA

mRNA sequence

ATGAAAAGCTCTCCCACAAAGAGGGGCACAGCAGGCAATATCAAAATTCCACCACCAAGATTTTTTCCACGAAAGTCTAATGGTAGGATTAAGAGAGAGGAGAAGAAGAGAGAAAGAAAGAAAGGAAAGAACCTGGTAATGTGCATAAAACTTGCGGCAGTGCAATCTCAAAAGAGAGATAAACGGCCCATAAGCAGCAGCGAAAACTGCCACAACAACAGATCCCATAACTGTAAGCCGCCCAAAACCTCTGACAAATCCTCCCCGACAGTAATGCCTTAA

Coding sequence (CDS)

ATGAAAAGCTCTCCCACAAAGAGGGGCACAGCAGGCAATATCAAAATTCCACCACCAAGATTTTTTCCACGAAAGTCTAATGGTAGGATTAAGAGAGAGGAGAAGAAGAGAGAAAGAAAGAAAGGAAAGAACCTGGTAATGTGCATAAAACTTGCGGCAGTGCAATCTCAAAAGAGAGATAAACGGCCCATAAGCAGCAGCGAAAACTGCCACAACAACAGATCCCATAACTGTAAGCCGCCCAAAACCTCTGACAAATCCTCCCCGACAGTAATGCCTTAA

Protein sequence

MKSSPTKRGTAGNIKIPPPRFFPRKSNGRIKREEKKRERKKGKNLVMCIKLAAVQSQKRDKRPISSSENCHNNRSHNCKPPKTSDKSSPTVMP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G108080.1CaUC06G108080.1mRNA