CaUC06G108010 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G108010
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 1711881 .. 1714387 (+)
RNA-Seq ExpressionCaUC06G108010
SyntenyCaUC06G108010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAGGTTTGACTCAATATTGACATTGTGTATATTTTTTCTTTCTTTTATAATGCAATTTCTTCGATAGTTCTCTCGAATTAAAAAGAAGTTATTGTTAAAATTAGAGCAAGAAGAAGAAGTTGTTTTCAAATATAGTAAAATTAGATAAAATATTTATAAATATAGCAAAATGTTAAGTATCAGTGACATTTTTCTATATTTGTAAATATTTCTAACATTTTTGTAATAGACTTCTATCATTGGGTAGAACTGTGATAAATTTCTATTGCTCAGTGGTTAGAAAGAACGATAAACTTGCTGTCTATTCCAGCCTATAGTTGAAAATTTTCTATATTTTTAAATAGTTTAATATTTTTTTCCTTAATAATAATTTCCTTATTAAACAATTTAAAAGTATTAAATAATTATTAATATTATTTAATATTTGAAAATTTGCAATGGGTAGCAACAACAATATAAGAGTATTTGTAAATATAGCAATAATTTTCTAAAATTATAAATATTAAAAGAAAATTTAAACCCAATTCCTAGACTTTTTTTTTTTTTTTTTTTTTTAAGCATTTTTTCTCTGATTTGTGTATTATATCTAATATACTTTATATTCCAAACGAAGGCACTCGATCTCAGGTATAGTGATTTTTTTTTTTTTTTTTTTTTTTAAGCATTTTTTCTCTGATTTGTGTATTATATCTAATATACTTTATATTCCAAACGAAGGCACTCGATCTCAGGTATAGTGATTTTTTTTTTTTTTTTTTTTTCTACTATTTATCATTTCCTTTGAGAAGCATTTAGTTATTTATTTATTTATTTATTCGATATTTTTGTTCAATGTTGCCAGTTGCTATACCTTTTCCTCTTATTTTTTGGCTGGCTCAACTCAGTTTCTTCCTTCTGCCTTTTCCTAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTTCAACCGAGGTATTCTCTCTTCCACTCTGCGCTCCTCTCCACCGATTCTTCCCGCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTTCTGCATTTCATTTTTCCAACTAATATTTCCAAATTTCCTTCATTAATTCCCATTATTCAATACAATTAATAACTGATGCATGGAATGGAATACTATTCGATTTCCACTGCCAACTATCCGATTATATGCTCCCCATATTCTTTCTCTTCTTTACATTATTTATTTCCGATTCTTTGTTTTGTGTAAATTATCCTCTTACCAGTATTTTGCCTTTTTGTTGTTCCCATTTTCTTCGGTATTCCAATTATTCAATTAAAATCTTTTGGATTTTGTCTTTCTCATTTCTTTTTCCTTTTTCAGCCGTTTTTTTTTTTTTTTTTTTTAATTTTATTTTAAATTTTCTATACATTCAACTGCTTAATCAATATTTGTACTACTCTGTTGATATTTTTTGCCTTGCTAACGAAGCTCCCTTGTTCTATCTTTTGTTTTTTCATTGATTTGCCTATGATTTTGTCTTATATGTTGACCCAATTGATGATTGAAGTTGAACAACACAAACTTGAGTTAAGGAATTGGTTTCTGTACATTCATAATGTGTGTTTCTCTTAGCAGTGTAGTTTAACAGTGTTTTGTTTATTTCCCTTTTGTTTGTCAGTTGGATGCTGTTTGGTTTAGCCTTTTATTTTCTCTATAAGGTGTGTGTTTCATCGTTATGCTTTTTATAGCGATACCGTTTTGAGTTTTTTTTTTTGTATTATTTTGGTTTCTTCTTCTGGATATTGATTGCCTTTGCAGTTCTTGCAATTTTCAGCTTGTTAATTGCTTCTCCATTTCTTAGGGACCATACAATTCCAAATCTAATCTTCTCCATTCAGCTTGTTATATATATACACTAACTTCTTCTTAAATTGTGTGTGTGTGTGTGTCTATGTATATGTATATAACAAAAAAAAAACATAAGAAAGCTTACCGAACTTCCAGCGAGCTTGAACAAGAGCAATCTCAGGGTTGTTTGTGAGAAATGGAATGGTACGCCAAAGAAAATCAGGCTCTGGTTGGAAATCGGCATCGAAAATAGCGACGTAATCGCAAAGTTTAACGTAATTATGCTTCATTCCTTCTTTTAAAGCCCCAGCTTTGTACCCATTTCTGTTGTCTCTGATCTCGTACTTTATGTTTATCCCTTTGCTTGCCCATCTTTTGCACTCTAATTCCACCAGATCCTGATGAATTTTCGTCCAAAATTTCACAAACCCACATCAGAAATCCGTAAAAAAATGGTGGGTTTCAAACCAAATCTGAGTTCCTCACTGATTTTGACAGAAAATTCTCCAACTGATAGAAGAACCCAGATGATAGAACCTTCTTCAAATGGTTGTTTTCGATCTGAAAGATCTCTTCATTCCCATACTATTTCTTCAATCGTACAACATGGGTTGATGAAGAATAAGAAAAGGAATTAACTTTTTTTTTTTTTTTTGGGTACAGAAATTATGTTTTTTAGTTCAAGATTTTAGTTAA

mRNA sequence

ATGATTAAGCATTTTTTCTCTGATTTGTGTATTATATCTAATATACTTTATATTCCAAACGAAGGCACTCGATCTCAGCATTTTTTCTCTGATTTGTGTATTATATCTAATATACTTTATATTCCAAACGAAGGCACTCGATCTCAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTTCAACCGAGCTTACCGAACTTCCAGCGAGCTTGAACAAGAGCAATCTCAGGGTTGTTTGTGAGAAATGGAATGGTACGCCAAAGAAAATCAGGCTCTGGTTGGAAATCGGCATCGAAAATAGCGACGTAATCGCAAAGTTTAACAAATTATGTTTTTTAGTTCAAGATTTTAGTTAA

Coding sequence (CDS)

ATGATTAAGCATTTTTTCTCTGATTTGTGTATTATATCTAATATACTTTATATTCCAAACGAAGGCACTCGATCTCAGCATTTTTTCTCTGATTTGTGTATTATATCTAATATACTTTATATTCCAAACGAAGGCACTCGATCTCAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTTCAACCGAGCTTACCGAACTTCCAGCGAGCTTGAACAAGAGCAATCTCAGGGTTGTTTGTGAGAAATGGAATGGTACGCCAAAGAAAATCAGGCTCTGGTTGGAAATCGGCATCGAAAATAGCGACGTAATCGCAAAGTTTAACAAATTATGTTTTTTAGTTCAAGATTTTAGTTAA

Protein sequence

MIKHFFSDLCIISNILYIPNEGTRSQHFFSDLCIISNILYIPNEGTRSQGFLHQLQLSSPSTELTELPASLNKSNLRVVCEKWNGTPKKIRLWLEIGIENSDVIAKFNKLCFLVQDFS
Homology
[Close]
BLAST of CaUC06G108010 vs. NCBI nr
Match: KAB8108638.1 (hypothetical protein EE612_044294 [Oryza sativa])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 64  LTELPASLNKSNLRVVCEKWNGTPKKIRLWLEIGIENSDVIAKFN 109
           LT+ PASLNK +LRVV E+WNG  ++IRL LE+GIE+ +V+A F+
Sbjct: 7   LTKFPASLNKGDLRVVHEEWNGPKEEIRLGLEVGIEHGNVLALFH 51

[Close]
BLAST of CaUC06G108010 vs. NCBI nr
Match: BAT05584.1 (Os08g0434566 [Oryza sativa Japonica Group])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 64  LTELPASLNKSNLRVVCEKWNGTPKKIRLWLEIGIENSDVIAKFN 109
           LT+ PASLNK +LRVV E+WNG  ++IRL LE+GIE+ +V+A F+
Sbjct: 7   LTKFPASLNKGDLRVVHEEWNGPKEEIRLGLEVGIEHGNVLALFH 51

[Close]
BLAST of CaUC06G108010 vs. ExPASy TrEMBL
Match: A0A0P0XGK1 (Os08g0434566 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0434566 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 64  LTELPASLNKSNLRVVCEKWNGTPKKIRLWLEIGIENSDVIAKFN 109
           LT+ PASLNK +LRVV E+WNG  ++IRL LE+GIE+ +V+A F+
Sbjct: 7   LTKFPASLNKGDLRVVHEEWNGPKEEIRLGLEVGIEHGNVLALFH 51

The following BLAST results are available for this feature:
BLAST of CaUC06G108010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8108638.12.6e-0560.00hypothetical protein EE612_044294 [Oryza sativa][more]
BAT05584.12.6e-0560.00Os08g0434566 [Oryza sativa Japonica Group][more]
BLAST of CaUC06G108010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G108010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0XGK11.2e-0560.00Os08g0434566 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0434566 PE... [more]
BLAST of CaUC06G108010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G108010.1CaUC06G108010.1mRNA