CaUC06G107930 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G107930
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	60S ribosomal protein L38
Location	Ciama_Chr06: 1628886 .. 1632490 (+)
RNA-Seq Expression	CaUC06G107930
Synteny	CaUC06G107930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACGAGGCTCTCTTTGAGAAGACATATTGCTACTCTGAATACGAGGTTTTTTGTGTGCTTTCTCCTCATAAGGGGATTGAAACCACTAAAGATTGATGAACTCCTTATGTTGGCTTTTTGGTCTATTGCCTTCAATGGCTTAGTAAGTCTGTGTGCTTTCTACTTGTTGCAAAACCCTTATCACTTAGTTTTTCAACTTCTCGAAAATATATTAGCTGATGAAATAGTAGTCGTTGCATCTAGCATTGGGTAGACCTCATACAACATCTGTCCTAGTTCTACCGTATCATTTGTTTCATTTCTTCTGGAATAATCACAAACACTTTTTTTTTATTATGGATCTACTACCAGAAACTCAATGAGTAATCTTAGCATTCAATGTGTATCCCACATCTGAACTGAATTCTTTATGGTTAAAGAATCTCTTTCTACATTTTGCAAGTTCGTTATTACGAGTAGTTCCTACAAAGGATCGGACTAATAATTCAATTGTGTTTTATTTGAAGATAATATATTTTCTTCTCTATAAACAAGGTCCATTGCCTTTTGATGTCCATTGCCACTTCTATATGCACTAGGCTCATTGGTCCAATGATGAGCAACTTGTCTTTGAATAATGGATTTATTCGTGAAACTCGTTTAGGCGCAATAAGGGACTTCATTCTTCCAGATGTAAACCCATTGTTTGTGAGAAAGTCACCAATATATTAGGATTTCCAAGATCCTCAAAAGACGAATTTGAAAGAGGTCCTGGTAAAGGGATCGAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATGGAACTAGGTGGGATAGGAGAATTGAAAAAGGGAAGTAGAGACGATGATAGAGATCACACTGAGAAACAAAGGAATTTTGTATGGGTACAACTCTTATTTGAACGAAAAGAAAAAAGTGCGATATTTGTTGTCTAATAGAACTAAGACTAATACCTTAATTGGCTCAGTCAGGTTCAAATCAGTGCTTCTTTGATTGTTCAAAACATCTTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTTCATTACGAAGAAGGATATTCCATTAGTAATGAAAAATGGGGTTGAGGGGATCAATATATGTTCAGGTTGATCAGAAGGTGCGGCAATAGCTAAACCTGAATGCGGAAAGCATGGCAAGTGTTTGAGGGTATGGAGCATTTTTTAATCGAGTCTTTTAAGAAGTTATATAAGTTGGATTGGCACCATTGACAATGTCGTTTTGGATGATTTTTTTGTGCTTGTTCTTGGAAATCAAAACAAATGTTTGGATCAACTCCTTTACAAATTTAAGTGTACTTAATCCTATATTGGGTGACCTCTTGAGATCAAGTAGGATTAAAGGTGTATATTATAAATGTATTTAATCTATTGAAAAGCCTTGTTAATTATCTTATAAAAAGTTATACTTTTGGGACATAGGCCTAATTTTTATAACTCATTTTATCAATCTGGCCAATCATTAATTCTCCAGAAAAAACTTGTACTCGAGTTCATCGAAAATGGACGAAACATCATGAATCAAATCGAAATCTAACAATCAGTTTGCCATTTTTCATTATTTATCATTTAATTAGTTTTTTATTTTTAATTAAATTTTCGTGTTTCTATTCAATAAATAGGTAAATGGGCCTTGTTGGATTGGGCTTATCTCAAATGACAGCCCATCTAGGGTTTAGAACAACTAAGTATCATCTTCGTTTCCCTCTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGGTACTTCTCAAATTCTAATTCCTAATTTCATTGCTTTTCTATTGTTCATATCCCTCATATACGTTCATGATTCAATCCACTTTTGATTTGTTAGTATTATGTTTGCTGTTGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCTATCTTGTTGAACGTTATGAGGCTGCATATCCTCATTAGCTAACAACTTCAGATGTTCTGCTCACGCTGAAATTTGAGGCGTTCTTGAGTATTTTTTTGTTAAGGTCTATGAGGATTTAAGTAACAGTTTGAGATGTAGATTTTCTTCCTCAAATTCTTCACTTTTGTGCACACGTCTCCCTCTCGTTTGCATATCTTATGCCTTGGGTTATTTTATAATCAATTCTTTGTCTTTTTGTTCCATATTTCAATTTGCAGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTTCTTTCTCAAGAACCAACACTGCGATGTTTTAAGAGTATTAATGATATATTGGAAGTAGCTATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGAAGGCTATAAATTTCCGAGGAAGAGGCTAAAAACACTCGTGTGTGCTTTTATCATGTGCTTTTGGCTTAAATGAACCTTAAATTTCCTAAAACACACTTTTTCTTTTGACTTACTTCCCTATAAGTACAGATAGAAACTCTCCCACAAATATCCCGCTTGTGATTTTTAACTCTACAATTTTGTATGTGCTTCTTGCTTCCATATATCGGTCTCTTTACAAAATTGTGTATTTCTTTAGCACTGCCCACATCACTTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGAGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTTCTTGGGGAATTTTTACTTGACTCTTGAGACGAATTTTAGACTTTTAGGAGTTTAGAGATCTGGGTAGGTTATTAGCTTCTTGGGGGTTCAGTCGTCATGGTAGAGTTCATTTGTTTGGATTGGTGTTCATTCTAGTTGGTGTCCGGATTCGTTTTCTTCAACTCCCGGTGTGTTCTTTGACTATCTATGAAGGTATGGTTTCTTATTAAAAAATATATATTAAAATACCATTTTGGTTTTGTATTTTAGGACTGGCATTTTAGTTTTGTCTTTTTTTGGTCATCACACTTTCAATAAATTTTTAAGTTTTAGTCTATTTTAGTTTATGGCCAACTTTTTCAATTCTGAGGGATAATTTTTGACATTCACTTTTCTTAAATAGAAATTATTATAATTATTTTATAAAGTTCAATATAAAAAAATATTAACCTCAAACTAACCCAAACTAACCTAAACTAGCTAATTTTGAAATTTGTGAAAGAACATGAATTAAAGTTCGACATTTGAGAGTTTTGTCTCTAGGTTTGAATGAATCCCAAATTACATGAATGAAAATAGTATTTTAACTACAAACAAAATTGGTGCCTATGATGTTTGGCTAAGATGAGCATGAATTTGCCCTGCATATTGAATGACATTTATTTTTCTGCTTTGGCAGGTTTGAGTGTGCAAGATCTGTGA

mRNA sequence

ATGATGACGAGGCTCTCTTTGAGAAGACATATTGCTACTCTGAATACGAGGCGCAATAAGGGACTTCATTCTTCCAGATGTAAACCCATTGTTTGTGAGAAAGTCACCAATATATTAGGATTTCCAAGATCCTCAAAAGACGAATTTGAAAGAGGTCCTGGTAAAGGGATCGAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATGGAACTAGGTGGGATAGGAGAATTGAAAAAGGGAAGTAGAGACGATGATAGAGATCACACTGAGAAACAAAGGAATTTTTCAGGTTCAAATCAGTGCTTCTTTGATTGTTCAAAACATCTTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTTCATTACGAAGAAGGATATTCCATTAGTAATGAAAAATGGGGTTGAGGGGATCAATATATGTTCAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Coding sequence (CDS)

ATGATGACGAGGCTCTCTTTGAGAAGACATATTGCTACTCTGAATACGAGGCGCAATAAGGGACTTCATTCTTCCAGATGTAAACCCATTGTTTGTGAGAAAGTCACCAATATATTAGGATTTCCAAGATCCTCAAAAGACGAATTTGAAAGAGGTCCTGGTAAAGGGATCGAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATGGAACTAGGTGGGATAGGAGAATTGAAAAAGGGAAGTAGAGACGATGATAGAGATCACACTGAGAAACAAAGGAATTTTTCAGGTTCAAATCAGTGCTTCTTTGATTGTTCAAAACATCTTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTTCATTACGAAGAAGGATATTCCATTAGTAATGAAAAATGGGGTTGAGGGGATCAATATATGTTCAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Protein sequence

MMTRLSLRRHIATLNTRRNKGLHSSRCKPIVCEKVTNILGFPRSSKDEFERGPGKGIECWNLMGKDKVIELIEKFMELGGIGELKKGSRDDDRDHTEKQRNFSGSNQCFFDCSKHLFQLRNKTRSFRFITKKDIPLVMKNGVEGINICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Homology

[Close]

BLAST of CaUC06G107930 vs. NCBI nr
Match: XP_038906668.1 (60S ribosomal protein L38-like [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-36
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 153 LSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY 212
           LSLHNQ+LLG+LSSAT MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY
Sbjct: 42  LSLHNQQLLGSLSSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY 101

Query: 213 TLCVFDSEKADKLKQSLPPGLSVQDL 239
           TLCVFDSEKADKLKQSLPPGLSVQDL
Sbjct: 102 TLCVFDSEKADKLKQSLPPGLSVQDL 127

[Close]

BLAST of CaUC06G107930 vs. NCBI nr
Match: KAE8646721.1 (hypothetical protein Csa_005163 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-32
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 151 RVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKY 210
           RVL+LHNQ+L G+L SAT MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKY
Sbjct: 64  RVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKY 123

Query: 211 LYTLCVFDSEKADKLKQSLPPGLSVQDL 239
           LYTLCVFDSEKADKLKQSLPP    ++L
Sbjct: 124 LYTLCVFDSEKADKLKQSLPPDYDPRNL 151

[Close]

BLAST of CaUC06G107930 vs. NCBI nr
Match: CDP18171.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 142.9 bits (359), Expect = 3.6e-30
Identity = 80/103 (77.67%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 136 LVMKNGVEGINICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIK 195
           L +K G       + RVLS     LL + SS+  MPKQIHEIKDFLLTARRKDARSVKIK
Sbjct: 3   LGVKFGKRNFGKQNPRVLSAAAAALLCS-SSSLNMPKQIHEIKDFLLTARRKDARSVKIK 62

Query: 196 RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 239
           RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Sbjct: 63  RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 104

[Close]

BLAST of CaUC06G107930 vs. NCBI nr
Match: QCG74680.1 (60S ribosomal protein L38-like protein, partial [Coffea canephora])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-29
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 165 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 224
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 12  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 71

Query: 225 LKQSLPPGLSVQDL 239
           LKQSLPPGLSVQDL
Sbjct: 72  LKQSLPPGLSVQDL 85

[Close]

BLAST of CaUC06G107930 vs. NCBI nr
Match: XP_027917741.1 (60S ribosomal protein L38-like [Vigna unguiculata])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-29
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 161 LGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE 220
           +G L +  TMPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD E
Sbjct: 22  VGTLKTQVTMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPE 81

Query: 221 KADKLKQSLPPGLSVQDL 239
           KADKLKQSLPPGLSVQDL
Sbjct: 82  KADKLKQSLPPGLSVQDL 99

[Close]

BLAST of CaUC06G107930 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]

BLAST of CaUC06G107930 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-28
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]

BLAST of CaUC06G107930 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-25
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGL+V++L
Sbjct: 61  PPGLAVKEL 69

[Close]

BLAST of CaUC06G107930 vs. ExPASy Swiss-Prot
Match: Q9JJI8 (60S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGL+V+DL
Sbjct: 61  PPGLAVKDL 69

[Close]

BLAST of CaUC06G107930 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-23
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGL+V++L
Sbjct: 61  PPGLAVKEL 69

[Close]

BLAST of CaUC06G107930 vs. ExPASy TrEMBL
Match: A0A068VBT7 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-30
Identity = 80/103 (77.67%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 136 LVMKNGVEGINICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIK 195
           L +K G       + RVLS     LL + SS+  MPKQIHEIKDFLLTARRKDARSVKIK
Sbjct: 3   LGVKFGKRNFGKQNPRVLSAAAAALLCS-SSSLNMPKQIHEIKDFLLTARRKDARSVKIK 62

Query: 196 RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 239
           RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Sbjct: 63  RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 104

[Close]

BLAST of CaUC06G107930 vs. ExPASy TrEMBL
Match: A0A4D6T016 (60S ribosomal protein L38-like protein (Fragment) OS=Coffea canephora OX=49390 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.6e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 165 SSATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 224
           SS+  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Sbjct: 12  SSSLNMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK 71

Query: 225 LKQSLPPGLSVQDL 239
           LKQSLPPGLSVQDL
Sbjct: 72  LKQSLPPGLSVQDL 85

[Close]

BLAST of CaUC06G107930 vs. ExPASy TrEMBL
Match: A0A4S8J6L6 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t24060 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 137 VMKNGVEGINICSARVLSLHNQKLLGNLSSATTMPKQIHEIKDFLLTARRKDARSVKIKR 196
           V+     GI + S+R +   +Q+    L S+ + PKQIHEIKDFLLTARRKDARSVKIKR
Sbjct: 3   VINRSTSGIRVLSSRYIYKPSQQ---TLFSSGSRPKQIHEIKDFLLTARRKDARSVKIKR 62

Query: 197 SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 239
           SKDVVKFKVRC+KYLYTLCVFDSEKADKLKQSLPPGLSVQ++
Sbjct: 63  SKDVVKFKVRCAKYLYTLCVFDSEKADKLKQSLPPGLSVQEV 101

[Close]

BLAST of CaUC06G107930 vs. ExPASy TrEMBL
Match: A0A5E4FVX4 (PREDICTED: 60S ribosomal (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B033102 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-29
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 166 SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 225
           SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 75  SAVRMPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKL 134

Query: 226 KQSLPPGLSVQDL 239
           KQSLPPGLSVQDL
Sbjct: 135 KQSLPPGLSVQDL 147

[Close]

BLAST of CaUC06G107930 vs. ExPASy TrEMBL
Match: A0A4Y1QP30 (Ribosomal L38e protein family OS=Prunus dulcis OX=3755 GN=Prudu_001682 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-29
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 166 SATTMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKL 225
           SA  MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKL
Sbjct: 87  SAVRMPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKL 146

Query: 226 KQSLPPGLSVQDL 239
           KQSLPPGLSVQDL
Sbjct: 147 KQSLPPGLSVQDL 159

[Close]

BLAST of CaUC06G107930 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 134.8 bits (338), Expect = 9.1e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]

BLAST of CaUC06G107930 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 134.8 bits (338), Expect = 9.1e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 170 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 229
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 230 PPGLSVQDL 239
           PPGLSVQDL
Sbjct: 61  PPGLSVQDL 69

[Close]

BLAST of CaUC06G107930 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-07
Identity = 42/125 (33.60%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 57  IECWNLMGKDKVIELIEKFMELGGIGEL-------------KKGSRDDDRDH---TEKQR 116
           ++CWNL+GKDK++ELIEK   LGGI EL             K+G       +    +K R
Sbjct: 365 VKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMR 424

Query: 117 NFSGSN------------QCFFDCSKHL-----FQLRNKTRSFRFITKKDIPLVMKNGVE 149
           +F  +             +  +  +  +     FQL+NK RSF  I  K +  + K GVE
Sbjct: 425 SFLSNRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPK-GVE 484

The following BLAST results are available for this feature:

BLAST of CaUC06G107930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906668.1	2.6e-36	96.51	60S ribosomal protein L38-like [Benincasa hispida]	[more]
KAE8646721.1	3.8e-32	86.36	hypothetical protein Csa_005163 [Cucumis sativus]	[more]
CDP18171.1	3.6e-30	77.67	unnamed protein product [Coffea canephora]	[more]
QCG74680.1	1.4e-29	95.95	60S ribosomal protein L38-like protein, partial [Coffea canephora]	[more]
XP_027917741.1	1.4e-29	89.74	60S ribosomal protein L38-like [Vigna unguiculata]	[more]

BLAST of CaUC06G107930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	1.3e-30	95.65	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	1.6e-28	91.30	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	2.1e-25	82.61	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q9JJI8	1.2e-23	78.26	60S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3	[more]
Q32PB9	3.4e-23	76.81	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]

BLAST of CaUC06G107930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A068VBT7	1.7e-30	77.67	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007069001 PE=3 ...	[more]
A0A4D6T016	6.6e-30	95.95	60S ribosomal protein L38-like protein (Fragment) OS=Coffea canephora OX=49390 P...	[more]
A0A4S8J6L6	1.9e-29	71.57	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t24060 PE=3 SV=...	[more]
A0A5E4FVX4	2.5e-29	95.89	PREDICTED: 60S ribosomal (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B033102 ...	[more]
A0A4Y1QP30	2.5e-29	95.89	Ribosomal L38e protein family OS=Prunus dulcis OX=3755 GN=Prudu_001682 PE=3 SV=1	[more]

BLAST of CaUC06G107930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43460.1	9.1e-32	95.65	Ribosomal L38e protein family	[more]
AT3G59540.1	9.1e-32	95.65	Ribosomal L38e protein family	[more]
ATMG00090.1	3.5e-07	33.60	structural constituent of ribosome;protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 171..237 e-value: 5.8E-33 score: 112.8
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 170..238
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 170..238 e-value: 4.5E-35 score: 121.6
None	No IPR available	PANTHER	PTHR10965:SF18	SUBFAMILY NOT NAMED	coord: 170..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G107930.1	CaUC06G107930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome