CaUC06G107910 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTATCTCAAATGACGGCCCATGTAGGGTTTGGAACAACTCAGTATCTTCGTTTCCCTTTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGGTACTTCTCAAGTTCTAATTCCTAATTACATTGCTTTTCTATTGTTCATATCCCTCATATACGTTCATGATTCAATCCACTTTTGATTTATTAGTATTATGTTTGCTGTTGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCTATCTTGTTGAACGTTATGAGGCTGCATATCCTCATTAGCTAACAACTTCAGATGTTCTGCTCACGCTGAAATTTGAGGCGTTCTTGAGTATTTTTTTGTTAAGGTCTATGAGGATTTAAGTAACAGTTTGAGATGTCGATTTTCTTCCTCAAATTCTTCACTTTTGTGCACACGTCTCCCTCTCGTTTGCATATCTTATGCCTTGGGTTATTTTATAATCAATTCTTTGTCTTTTTGTTCCATATTTCAATTTGCAGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTTCTTTCTCAAGAACCAACACTACGATGTTTTAAGAGTATTAATGATATATTGGAAGTAGCTATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGAAGGCTATAAATTTCCGAGGAAGAGGCTAAAAACACTCGTGTGTGCTTTTATCATGTGCTTTTGGCTTAAATGAACCTTAAATTTCCTAAAACACACTTTTTCTTTTGACTAACTTCCCTATAAGTACAAATAGAAACTCTCCCACAAATCTCCCGCTTGTGATTTTTTCCTCTACAAGTTTGTATGTGCTTCTTGCTTCCATATATCGGTCTCTTTACAAAATTGTGTATTTCTTTAGCACTGCCCACATCACTTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAACTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAG TTATCTCAAATGACGGCCCATGTAGGGTTTGGAACAACTCAGTATCTTCGTTTCCCTTTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAACTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAG ATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAACTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAG MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGV Homology
BLAST of CaUC06G107910 vs. NCBI nr
Match: KAF9621681.1 (hypothetical protein IFM89_025976 [Coptis chinensis]) HSP 1 Score: 127.9 bits (320), Expect = 4.6e-26 Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0
BLAST of CaUC06G107910 vs. NCBI nr
Match: KAG2371213.1 (60S ribosomal protein [Vigna angularis]) HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26 Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0
BLAST of CaUC06G107910 vs. NCBI nr
Match: MQM20240.1 (hypothetical protein [Colocasia esculenta]) HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. NCBI nr
Match: KAG5104250.1 (hypothetical protein JHK82_041220 [Glycine max]) HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. NCBI nr
Match: KAE8646721.1 (hypothetical protein Csa_005163 [Cucumis sativus]) HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 3.3e-27 Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 4.1e-25 Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 2.9e-23 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4) HSP 1 Score: 101.7 bits (252), Expect = 4.7e-21 Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2) HSP 1 Score: 101.7 bits (252), Expect = 4.7e-21 Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: S8CV72 (GRAS domain-containing protein OS=Genlisea aurea OX=192259 GN=M569_05970 PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 6.5e-26 Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A6J1I9U6 (60S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A7I8IQP0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A7I8IHZ9 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03003959 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A445IEB5 (60S ribosomal protein L38 OS=Glycine soja OX=3848 GN=D0Y65_032646 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of CaUC06G107910 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family ) HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28 Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0
BLAST of CaUC06G107910 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family ) HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28 Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|