CaUC06G107910 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G107910
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description60S ribosomal protein L38
LocationCiama_Chr06: 1621884 .. 1623165 (+)
RNA-Seq ExpressionCaUC06G107910
SyntenyCaUC06G107910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCTCAAATGACGGCCCATGTAGGGTTTGGAACAACTCAGTATCTTCGTTTCCCTTTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGGTACTTCTCAAGTTCTAATTCCTAATTACATTGCTTTTCTATTGTTCATATCCCTCATATACGTTCATGATTCAATCCACTTTTGATTTATTAGTATTATGTTTGCTGTTGCCGACTTGTCATCTGCTCTGATTTAGTTTCTCTTCTATCTTGTTGAACGTTATGAGGCTGCATATCCTCATTAGCTAACAACTTCAGATGTTCTGCTCACGCTGAAATTTGAGGCGTTCTTGAGTATTTTTTTGTTAAGGTCTATGAGGATTTAAGTAACAGTTTGAGATGTCGATTTTCTTCCTCAAATTCTTCACTTTTGTGCACACGTCTCCCTCTCGTTTGCATATCTTATGCCTTGGGTTATTTTATAATCAATTCTTTGTCTTTTTGTTCCATATTTCAATTTGCAGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTTCTTTCTCAAGAACCAACACTACGATGTTTTAAGAGTATTAATGATATATTGGAAGTAGCTATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACATACAAGTGTTTCATAATTTGTTTGTGAAGGCTATAAATTTCCGAGGAAGAGGCTAAAAACACTCGTGTGTGCTTTTATCATGTGCTTTTGGCTTAAATGAACCTTAAATTTCCTAAAACACACTTTTTCTTTTGACTAACTTCCCTATAAGTACAAATAGAAACTCTCCCACAAATCTCCCGCTTGTGATTTTTTCCTCTACAAGTTTGTATGTGCTTCTTGCTTCCATATATCGGTCTCTTTACAAAATTGTGTATTTCTTTAGCACTGCCCACATCACTTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAACTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAG

mRNA sequence

TTATCTCAAATGACGGCCCATGTAGGGTTTGGAACAACTCAGTATCTTCGTTTCCCTTTGAACCTCCACATAAATGACAACTTCTAAAAGCTAGGGTTTTGAGCCTCCACAATCAGAAGCTACTCGGCAATCTCAGCTCTGCCACCACAATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAACTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAG

Coding sequence (CDS)

ATGCCGAAACAAATTCACGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATAGGGGCAAACCCTTCGGCAGGCTTGCTTTTCCCCCTTCCTTGGGGAACTTTTACTTGACTCTTGAGACGAATTTTAGACATTTAGGAGTTTAG

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDRGKPFGRLAFPPSLGNFYLTLETNFRHLGV
Homology
BLAST of CaUC06G107910 vs. NCBI nr
Match: KAF9621681.1 (hypothetical protein IFM89_025976 [Coptis chinensis])

HSP 1 Score: 127.9 bits (320), Expect = 4.6e-26
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIK+SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPDRGKPFGRLAFPPSLGNFYLTLE 86
          PP R      ++  PSL +F +T E
Sbjct: 61 PPGR----FCISCHPSLFSFEITGE 81

BLAST of CaUC06G107910 vs. NCBI nr
Match: KAG2371213.1 (60S ribosomal protein [Vigna angularis])

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPDRGKPF 69
          PP R   F
Sbjct: 61 PPGRRSRF 68

BLAST of CaUC06G107910 vs. NCBI nr
Match: MQM20240.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPD 64
          PPD
Sbjct: 61 PPD 63

BLAST of CaUC06G107910 vs. NCBI nr
Match: KAG5104250.1 (hypothetical protein JHK82_041220 [Glycine max])

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPD 64
          PPD
Sbjct: 61 PPD 63

BLAST of CaUC06G107910 vs. NCBI nr
Match: KAE8646721.1 (hypothetical protein Csa_005163 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 83  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 142

Query: 61  PPD 64
           PPD
Sbjct: 143 PPD 145

BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-27
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-25
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-23
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-21
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-21
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: S8CV72 (GRAS domain-containing protein OS=Genlisea aurea OX=192259 GN=M569_05970 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.5e-26
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDPEKADKLKQSL 60

Query: 61 PPDR 65
          PPD+
Sbjct: 61 PPDK 64

BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A6J1I9U6 (60S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A7I8IQP0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A7I8IHZ9 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03003959 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. ExPASy TrEMBL
Match: A0A445IEB5 (60S ribosomal protein L38 OS=Glycine soja OX=3848 GN=D0Y65_032646 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

BLAST of CaUC06G107910 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PP 63
          PP
Sbjct: 61 PP 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF9621681.14.6e-2680.00hypothetical protein IFM89_025976 [Coptis chinensis][more]
KAG2371213.16.1e-2694.1260S ribosomal protein [Vigna angularis][more]
MQM20240.16.1e-26100.00hypothetical protein [Colocasia esculenta][more]
KAG5104250.16.1e-26100.00hypothetical protein JHK82_041220 [Glycine max][more]
KAE8646721.16.1e-26100.00hypothetical protein Csa_005163 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
O228603.3e-2795.1660S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1[more]
P462914.1e-2590.3260S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1[more]
Q95V842.9e-2385.4860S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1[more]
Q32PB94.7e-2179.0360S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4[more]
P631734.7e-2179.0360S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
S8CV726.5e-2696.88GRAS domain-containing protein OS=Genlisea aurea OX=192259 GN=M569_05970 PE=3 SV... [more]
A0A6J1I9U61.5e-25100.0060S ribosomal protein L38 OS=Cucurbita maxima OX=3661 GN=LOC111471374 PE=3 SV=1[more]
A0A7I8IQP01.5e-25100.00Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV... [more]
A0A7I8IHZ91.5e-25100.00Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03003959 PE=3 SV... [more]
A0A445IEB51.5e-25100.0060S ribosomal protein L38 OS=Glycine soja OX=3848 GN=D0Y65_032646 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G43460.12.4e-2895.16Ribosomal L38e protein family [more]
AT3G59540.12.4e-2895.16Ribosomal L38e protein family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..63
e-value: 1.5E-31
score: 108.3
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 1..63
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 1..66
e-value: 1.9E-33
score: 116.3
NoneNo IPR availablePANTHERPTHR10965:SF17BNACNNG77070D PROTEINcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G107910.1CaUC06G107910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022618 ribonucleoprotein complex assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome