CaUC06G107540 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G107540
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProtein DETOXIFICATION 27-like
LocationCiama_Chr06: 1130632 .. 1132662 (-)
RNA-Seq ExpressionCaUC06G107540
SyntenyCaUC06G107540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTGTGAAATAAGAAAGGATTGCGGTAGTCTTGGGAGCAGGGGATTCCCACCTGGGGAAGTGGAGATCCAACGGTGGACATCGAACCGTAACGGCCGCGCCAAAATCAACGGCATAAAAGTGGAAAGCCTTTTGGAAAGTGGGGGCACGTGGGCCCAGAATTTCCGACAGGTGGAAATTGTAGTTTTTTCATCAAAACGACACGTCGGTTTCCTCACAATCCAAAAAAGTAAAAAATCCATCCTCTTTCTCTCGCCTTATTGGAAGTTAACACTGTTTTCTTTGGACCCCACCCTAAAATAAACAAAATCATTAATTAATTATTTCTCATACTAAATTATTTAAGATTATTTTTTTCCTTTTTTTTTTTTTAATAAAAAAAGTCGCTATTATTTCTCATTCAAGATCACTATTTTATCATTTAATGTGTCAAATAGCAATTTCTTCCAAAGCTTTCAACTCATGTTATAAAAACTTCTAAATTTATAAAACACAAACGCATAAAGTTAATATGGTTAACTTTAAAGTTAGAGATTTAATTTCCCGCTTCACGTAGTGTAATATAAAAAATTATTTTATATAACAATTTATTATCTTCACTAGTTTAGTGGATAAGCACTAATCATCCTTTCAATTACTTAAAAAAAAAAAAAGAAAAAGGAAAAGTTACTCTCGTTTTGCTTGGATTAAGGTTAAGATTTTTATTTCCTTCCTCTTTTATATTTCTTCTTATCCATATGGAAACATGCAAATTATTTAATACCTATATACTAAAGTTTTAGTTAAATTCTAAATTTAGTAATCCTATCCTAAAATCTATATCTATCTATTCCATTGTTTTTTAAAAATATGTAACTAATTTCTAAATTTTCAATTTTGTTCATAATAGATGTATGAATCGTTGGAATTAATCATTTTATTAGATATAAAATTAATTATTATGTATAATGAAATTCTAATTTTTTAATTTACCTAGTAAATTTGTAAATTTTAAAAATCAATAACACTTCAAAGAGAAAAAAAACATAAACCCAAAACTTCAAATATATATATATATATATTAATTTATTGCTTAACAACATATCCAAGTGAGATTTAAACTTGAGTTATATTACTTTTAAATGAATTCATCTATGTTCCAAATTAGCATTTTCATAAATATTTCAATCAATATTTTCATTACACAAATAAAAATATCAACAAAATGTAAAAAAAGTCAACAAAATATCAGTATATCAATTAATTTAAAAAGTATGAAATATTTTTTATATAAATCTGAACCTGACATTGATGCTTAAAACCTAAATTAGTTTTGATTATGAAACATAATTAAAATATTAATGGGAGAATTCCAATAGGATTATAAATATATATATATATAATGTTTAGAACCTGAAGGTGCGCTCTCTCTCTTCTCTTAACATAAAACTTCCTTTCTCTGTTTCCTATTTTTGCTGAATTTCATTTTCCATCTCTCAGCACCAACTTCCTAACTTAACATTCATTCGTTCGTTCGTTCATCAGGTGATTTCTTCCATTGCCACCATTTTCTTCCATGATTTCTCTTCCTTTTTTCTCTGCATTTTCTTTTCCATCTTCGTATTTTCTTTCGCATTTCATGTTATCAATCATCGTTTTCCCTTCTGCAAATCTTCCGGATTCATAAATGCTTGATTTCCTTCCCTCATTCATCCCTCTCTAACTTCTTGTATGTGTTTTTTTTTTTTGTTCCTCCTTAACAACTTTTGCATTATGTTCTCTGTTTTCGTTCATTTTGTTATCAGGGGATTCGTGGGTTTTCTGCATGGAAACATTCACGTGATGATGGAATAGGGATGGGTTTTTGGGAATGTTTCAGCTTATTTGCGACATGGGGTTTGGTTAAATTGATGGATAAACGTGTTTGATTGTGAAATTTGGGGGTTTGTTTTTTTCTTTTAAATGTGGGTATGTTGTTTTATATGTGTACATCTCTGAAATCAGTGGGAGATTGAGAATGTGATGATAGCGAGAGGTGTTGAACGATGA

mRNA sequence

ATGACGTGTGAAATAAGAAAGGATTGCGGTAGTCTTGGGAGCAGGGGATTCCCACCTGGGGAAGTGGAGATCCAACGGTGGACATCGAACCGTAACGGCCGCGCCAAAATCAACGGCATAAAAGTGGAAAGCCTTTTGGAAAGTGGGGGCACGTGGGCCCAGAATTTCCGACAGGGGATTCGTGGGTTTTCTGCATGGAAACATTCACGTGATGATGGAATAGGGATGGGTTTTTGGGAATGTTTCAGCTTATTTGCGACATGGGGTTTGTGGGAGATTGAGAATGTGATGATAGCGAGAGGTGTTGAACGATGA

Coding sequence (CDS)

ATGACGTGTGAAATAAGAAAGGATTGCGGTAGTCTTGGGAGCAGGGGATTCCCACCTGGGGAAGTGGAGATCCAACGGTGGACATCGAACCGTAACGGCCGCGCCAAAATCAACGGCATAAAAGTGGAAAGCCTTTTGGAAAGTGGGGGCACGTGGGCCCAGAATTTCCGACAGGGGATTCGTGGGTTTTCTGCATGGAAACATTCACGTGATGATGGAATAGGGATGGGTTTTTGGGAATGTTTCAGCTTATTTGCGACATGGGGTTTGTGGGAGATTGAGAATGTGATGATAGCGAGAGGTGTTGAACGATGA

Protein sequence

MTCEIRKDCGSLGSRGFPPGEVEIQRWTSNRNGRAKINGIKVESLLESGGTWAQNFRQGIRGFSAWKHSRDDGIGMGFWECFSLFATWGLWEIENVMIARGVER
Homology
[Close]
BLAST of CaUC06G107540 vs. NCBI nr
Match: KAA0039063.1 (protein DETOXIFICATION 27-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 58 QGIRGFSAWKHSRDDGIGMGFWECFSLFATWG 90
          +GIRGFSAWKHSRD+ + M FWECFSL   WG
Sbjct: 53 EGIRGFSAWKHSRDEVVRMDFWECFSLLMKWG 84

[Close]
BLAST of CaUC06G107540 vs. NCBI nr
Match: TYJ99743.1 (protein DETOXIFICATION 27-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 59 GIRGFSAWKHSRDDGIGMGFWECFSLFATWG 90
          GIRGFSAW HSRD+ + M FWECFSL   WG
Sbjct: 54 GIRGFSAWNHSRDEVVRMDFWECFSLLMKWG 84

[Close]
BLAST of CaUC06G107540 vs. ExPASy TrEMBL
Match: A0A5A7T7W8 (Protein DETOXIFICATION 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001590 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 58 QGIRGFSAWKHSRDDGIGMGFWECFSLFATWG 90
          +GIRGFSAWKHSRD+ + M FWECFSL   WG
Sbjct: 53 EGIRGFSAWKHSRDEVVRMDFWECFSLLMKWG 84

[Close]
BLAST of CaUC06G107540 vs. ExPASy TrEMBL
Match: A0A5D3BKB3 (Protein DETOXIFICATION 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00190 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 59 GIRGFSAWKHSRDDGIGMGFWECFSLFATWG 90
          GIRGFSAW HSRD+ + M FWECFSL   WG
Sbjct: 54 GIRGFSAWNHSRDEVVRMDFWECFSLLMKWG 84

The following BLAST results are available for this feature:
BLAST of CaUC06G107540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039063.13.9e-0571.88protein DETOXIFICATION 27-like [Cucumis melo var. makuwa][more]
TYJ99743.12.5e-0470.97protein DETOXIFICATION 27-like [Cucumis melo var. makuwa][more]
BLAST of CaUC06G107540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G107540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T7W81.9e-0571.88Protein DETOXIFICATION 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BKB31.2e-0470.97Protein DETOXIFICATION 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of CaUC06G107540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G107540.1CaUC06G107540.1mRNA