CaUC06G107290 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G107290
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	U2 small nuclear ribonucleoprotein A'
Location	Ciama_Chr06: 848354 .. 854492 (-)
RNA-Seq Expression	CaUC06G107290
Synteny	CaUC06G107290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGACTTACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTGTCTATCCTTTCTCAACTCTTGCTTCTTTCACTCTCTCGACCACACATTTCTTAACTCCTTTCTTCTCGTCTCCAGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTGATTTCCACCGCCTTATGTGTCTTGTTTTTATATCTCTGGAACTCCAACATCTGTTAAGTCCGTTTCCGGGGTCTTCTTACTCTACTATGATGAATCCCTAACTTAGAGCATGCCGTTTCTCCTCCTGGGTTGCTTTTGTTGTAGTCTGAAATTTAAATTATATTCTTTACATGCTGGCGAGAATCTCTCCACAGAATTCAAATTCACTTCAAATGAGTAATGACAGTTCTCATTAATCTGATTAGTTTGTTTTGCTACAATCTGTTATACCATTATGAAGGTCCTTTGAAATTTCATTTTCCTTGAAGACAGCCTAAAGAACTCCAATTTGAGGCCATATGCTGCTGTACATTTTCCCTTGAGTCATAAAAAACTTTAAATTTAACATATTGAGGATCCAATTAACCCTTTTAACCATAAGGATCAGATCTGAGCAGTAATAGCATTTTTTTCCCATAGAATTATGGCTATATTCTTGAACTGCCTATCCGAGAGAACCAAGTTCACATTGAATGAAGAGGTGGTTCATAGTTTTTACATCCTTTCTACATGAATGATAGATATGAGATCTGAGGCTATATAGAAAGAGATGGCCTCCTTTTCCTTCTATCTCGAGTAATAAGACTTCCTTTAGGGCCATAAATAAACTCAGACCTGTTAAGGAACTTGCTGGTGTTAACCAATTAGGAGTATCTTTTTATTGAATAAAAAATCTGCCCCTTACAAATAGGACTAGTGTTTATACTAATGTCTCTCTTAACCAAAACTTACAAACTTAACAAACTACTCCAACAGCTAACAACTAACTTGCCCAATAGCTAGTTCAACCAAAAAATTACTCAATGACATCACTTACCTTACAAAACAAGCTCCACGAGCGCAGAACACAACTTGGACTAATTAGAGTTGAGCTTGAAGTTAAACGACATATGAGCAAATAGGCCATTTGAATAAAGTTTCCAAAGCAGTCTATCCTTATCATTCCCTAGCTTTATCAGATTGAGCTTAAGAGAAAAAGGGATCCACTCTTTAATTATCTATCTCTTTGTCTCCTCCTCAAGCCTACATCCCATAGACTCCTCTTCCACAAATTCTTGATGAGGCTCCTTCTGTTTTTGGAACATCATTATTTCGAAAAGAAACAGGAGTGGCTATCATCAAACTAACTATCTTCCAAAGATGTAATTGTCTCTCATGCCAACTTTGTCTAAAGTACAAATTATCAACGGACCTTAGGTTTTGATTACTCCATGGCTAAAAATTAACTCCATGACCACGACCTCCTACATTTGTGAGCCACCTGATGGGATAAGAACCATATTTACTCTGTAAAACTTTCTCCTAGGCCCTCGTGAAAGTATCTACAACAGAGCCTCTGATCATTAAGGGTTCTTTCTTGTATCTCATGTATCCCTTTTCCAATCCACCTAAAGAAATAGGGACTCAAGGAGGGCAGCTTACTTTCACAGTTTCACTCGATTGAGTGACAACCTTTATCAAAGAAACGACATACTCATTCTTTTGTGTCAAGCTTCTAGAGTTGATTCCTCATTACTCTGTAGTACTTTGTCTTTATTTAAAATGAAATGATATTTCTTGATAAGAAAGGTTTTGTCCAAGGCTCTTGCAATATTGAGTTGTAGTGGTGTTTGTTCACCAATTTGACCAAAGAGCACCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAATGAAAAGAAAAGTGCAGCCTCATTTCATTATAAGGTTAGGTGGGTTGGCTTGTGAGATTAGTCTAGATGTGCACAAGTTGGTCTAGACACGCACGAGTCACGAATAATTGAAAAAAAAAGAGGTGACCAAGAATACCCCTCATCTCCTATTAAAATTGACAAAATACACCAAGAAGGTGTCACTAATACACAGTAGGTTAAAAATACACCAACGGAACGGAACTTTTCATTGATATAATGAAAAGAGCAATAAATCAATTTCAAAGAGACTAAATATCCAAAATAGACAAAAAAGAACTGAGGATCAGGAGGTGCACTCGAGCGGTTAAAGTTACGTTAATATTTTTTATTTAAAGTACTTTTTCTGTTTGTTTGAGGATAGAATGGTTGACAATTTATTTGGCTTTCCCAAAAATGAAAGAAAGTGATGTGTATTCTTGGTTTTCTTTTATTTTCTAGCCATGTAATGGTAGATTTTTCTTGGCTAAATTTCAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAACTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGCATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCTTTTACGGGATTAGTTAAACTCCATTTGATAACCATTTGCTTTCGAAAATTATGCTTGTTTAAACACTCACAATTTTTTTGGGTGAGTTTTCCACTTGAAAACACATTTAATATTTTAAACCAAGTTTCAAAAACAAAATAAGTTTAAAAAACTACTCTTTTTAGTTTTAGATTTTGGCTTGGTTTTTTAAAATGTTTTTAAAATATAGATGATAAAACACAAAAATTATTTGTGGAAGTATTGTTTACAATCTTAATTTTCAAAAACAGAAAACTAAAAAATAAAATAGTTATCAAATGGGACTTTAACAATCATGTTTTTGGAAGTATTTTTTCTTAAATAAAATTGTCTTTGTTCTTCTCAGAGTTCTTGCCAAAATTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTGGTAGAGATCGACCCGCTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTTATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCATTCAGACTTTATTATTTAAGGAGTGGCTGTTATTCTTGGCTTGTTTTTGCCTTTTGCTTTTTACAATGCCCAGAAACAGTTAGAAGACAATTTCAAGATTATTTCAATTTTAGAGTCTTATGGTGTATTTTGAAAATGTCGTAACTCAACTTTTATGTTTCTCTTAAGGATGTAGCATTAGTTTGAATTCTTTTTATTGTATTTAGTATGATATTTGAATCTAAGTTGGGTTTTGATTGTGCTATTTCGGTAAGATCTTAAACTTCTTGCTGTTTTTAAAAATACATATATTATGCTATTTATGCAAATACCTCTATTTTTTGTTAGAGAAGAAATGTATTTTTTGCATATCAAGAATGTGCATATGCTCATATGTTAATACCTAAGGTTTCGTTTAGTAACAATTTCGGTTTTTGTTTTTGTTTTTTTAAAATTAAGCCTATAGACACTACTTTCACCTCTAAATTTCTTCCTTTGTTGCCTAGTTTTTACCAACGGTTTAAAAAACCAAGTCAAAATTTGAAACTAAGAAGAGTAGTTTTTAAAAATTTGTTTTTGTTTTTGGAATTTGGCTAAAAATTCAACTATTGTACTTAAAAAAGATGCAACCATTGTAAGAAATGTGGAGGAAATAGGCTTAATTTTCAAAAACCAAAAATAAAAAACGAAATAGTTATCAAATGGGACCTAAAGAATTCAAATGCATCCATTCAATTTAATGTCCAGCTATTTATTCATTAACAATCATGTGCCCGAGAATTAGTGGCTGAACAAGGAATGAAAAGTAAAATTATAAATAGAGTTGGAATGTCCGTGGACATCTAGGATGTGCACATGTTTAGGGGGTTCCACTCAACTTCATTTAACTCCAATTCGATGTGTCTGGCTTAACTCTTGATCAACAGTTGGACCTTGGAGCTGTGTGTTTCTATTTTCCCCCTGTTCTTGGAGTCCTCTTTTTGTTAGTTCTTTTTCTGCAAAACTTTTATGTGCAGGATATATTTTGGCATATGTTCTAACATTCTTGGATTTCATCTGATAACAAATTTGTTTTTGTTATGAAAGTTATTTTTAAAATTTTAGCCAATTTGTTAAACAACGTATAGTTTTATATACGATACAGTTATTGATCATTTCCAAATGTCTTATACCAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAAGACGTTCATTCCAGGTGAGGCAGAGAATGCATCCAAACCTGTCGAGGAGAAACAAACTTCAAATGTGTCTGCACCAACACCAGAGCAGATTATAGCTATTAAGGTGTGTACATTCTAATAGCATAAAGCTTAAGAATCACTTTGATTGAAACATATGTTTGCAAGTTTTCAAGATCTTTATTTTGTTGCTGTTTAACTTCTTAGAAATTTTTAAGGTTGCCTCAGCTGGTTTCAGCCATTTATGCCACCTTTTCAAATCCACGACATTAATTCCCTTAGTTTGATCTGCATTGGTGTGTTTCTTCTAGATAAGCTCCTGAAGATTATTTGCAAATTAGCACTCTGGCTTGTAAAAAATTTATCACCACCATATGTTTCCTATTACATCGTGTGATCAATTAATTCTTTATGTTACAGGCAGCCATTGTTAATTCCCAAACTCTTGAAGAGGTCGCAAGATTAGAACAGGTGTGCTTCGTTGTTTTGTTGTGTACAGTCACCCCTCCTACCGTAAAAAGGGAGAAAAATCTCTATTTAAATGTTATGGGAATAATAACGTTGGAAAATGCTCCTTTGTTGCTGGCAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACAAAAGATACAGAGGATAAGACAATGTCCGATAGTGGAGACCAAGAAAATGTATCCAAGGATGTGAAAGAGCAATCAAATGATGAATCTACACCTATGGAGCAGGTACCACAAACCCTTTTGCTATTTGAGTGATGCCTTTGTGCGGTTGTTTCATCTCTCACATTCTTTTTTAAGTTTGTTTGTGCAATCATATTTATATTTTATAGTATGTATGTTCTTCATTTTCCTTTTTGTGGTTGTAGGAATAG

mRNA sequence

ATGGTGAGACTTACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAACTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGCATCAATCCAAATATTGGAGAGTTCTTGCCAAAATTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTGGTAGAGATCGACCCGCTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTTATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAAGACGTTCATTCCAGGTGAGGCAGAGAATGCATCCAAACCTGTCGAGGAGAAACAAACTTCAAATGTGTCTGCACCAACACCAGAGCAGATTATAGCTATTAAGGCAGCCATTGTTAATTCCCAAACTCTTGAAGAGGTCGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACAAAAGATACAGAGGATAAGACAATGTCCGATAGTGGAGACCAAGAAAATGTATCCAAGGATGTGAAAGAGCAATCAAATGATGAATCTACACCTATGGAGCAGGAATAG

Coding sequence (CDS)

ATGGTGAGACTTACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAACTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGCATCAATCCAAATATTGGAGAGTTCTTGCCAAAATTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTGGTAGAGATCGACCCGCTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTTATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAAGACGTTCATTCCAGGTGAGGCAGAGAATGCATCCAAACCTGTCGAGGAGAAACAAACTTCAAATGTGTCTGCACCAACACCAGAGCAGATTATAGCTATTAAGGCAGCCATTGTTAATTCCCAAACTCTTGAAGAGGTCGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACAAAAGATACAGAGGATAAGACAATGTCCGATAGTGGAGACCAAGAAAATGTATCCAAGGATGTGAAAGAGCAATCAAATGATGAATCTACACCTATGGAGCAGGAATAG

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE

Homology

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BLAST of CaUC06G107290 vs. NCBI nr
Match: XP_038907085.1 (U2 small nuclear ribonucleoprotein A' [Benincasa hispida])

HSP 1 Score: 517.3 bits (1331), Expect = 8.4e-143
Identity = 277/286 (96.85%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK F+
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKMFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKPVEEKQTSNVSAPT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSNVSAPTAEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LL+DNTVPNTTK+T+DKTMSDSGD+ENVSKDVKEQSNDE TPMEQE
Sbjct: 241 LLDDNTVPNTTKNTDDKTMSDSGDEENVSKDVKEQSNDEPTPMEQE 286

[Close]

BLAST of CaUC06G107290 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo] >KAG6592834.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. sororia] >KAG7025241.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 515.8 bits (1327), Expect = 2.4e-142
Identity = 275/286 (96.15%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNTV NTTKDT+DKTMSD GD+ENVSKD KEQSNDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 286

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BLAST of CaUC06G107290 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima])

HSP 1 Score: 514.2 bits (1323), Expect = 7.1e-142
Identity = 274/286 (95.80%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNTV NTTKDT+DKT+SD GD+ENVSKD KEQSNDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQE 286

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BLAST of CaUC06G107290 vs. NCBI nr
Match: XP_022148876.1 (U2 small nuclear ribonucleoprotein A' [Momordica charantia])

HSP 1 Score: 505.8 bits (1301), Expect = 2.5e-139
Identity = 270/285 (94.74%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKP EEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQ 286
           LLEDNTV NTTKDT+D+TMSD  D++NVSKDVKEQ NDES PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

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BLAST of CaUC06G107290 vs. NCBI nr
Match: XP_004140564.3 (U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetical protein Csa_005755 [Cucumis sativus])

HSP 1 Score: 488.4 bits (1256), Expect = 4.2e-134
Identity = 265/286 (92.66%), Postives = 270/286 (94.41%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE E ASKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNT  N TKD +DKTMSDSGD+E+V       +NDESTPMEQE
Sbjct: 241 LLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE 279

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BLAST of CaUC06G107290 vs. ExPASy Swiss-Prot
Match: P43333 (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 355.9 bits (912), Expect = 4.2e-97
Identity = 190/239 (79.50%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             E +  S+  E  +T  V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of CaUC06G107290 vs. ExPASy Swiss-Prot
Match: P09661 (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 6.8e-55
Identity = 128/238 (53.78%), Postives = 162/238 (68.07%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of CaUC06G107290 vs. ExPASy Swiss-Prot
Match: Q4R8Y8 (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.8e-55
Identity = 128/238 (53.78%), Postives = 162/238 (68.07%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of CaUC06G107290 vs. ExPASy Swiss-Prot
Match: P57784 (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 5.8e-54
Identity = 127/238 (53.36%), Postives = 161/238 (67.65%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of CaUC06G107290 vs. ExPASy Swiss-Prot
Match: Q9BLB6 (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-45
Identity = 109/238 (45.80%), Postives = 152/238 (63.87%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LP L TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FIPGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
             P E E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIE-----PNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

[Close]

BLAST of CaUC06G107290 vs. ExPASy TrEMBL
Match: A0A6J1H905 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461186 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.2e-142
Identity = 275/286 (96.15%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNTV NTTKDT+DKTMSD GD+ENVSKD KEQSNDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of CaUC06G107290 vs. ExPASy TrEMBL
Match: A0A6J1KWC8 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC111498166 PE=3 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.4e-142
Identity = 274/286 (95.80%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNTV NTTKDT+DKT+SD GD+ENVSKD KEQSNDESTPMEQE
Sbjct: 241 LLEDNTVTNTTKDTDDKTVSDGGDEENVSKDAKEQSNDESTPMEQE 286

[Close]

BLAST of CaUC06G107290 vs. ExPASy TrEMBL
Match: A0A6J1D6P1 (U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC111017441 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 270/285 (94.74%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE ENASKP EEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 PGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQ 286
           LLEDNTV NTTKDT+D+TMSD  D++NVSKDVKEQ NDES PMEQ
Sbjct: 241 LLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ 285

[Close]

BLAST of CaUC06G107290 vs. ExPASy TrEMBL
Match: E5GB46 (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.5e-133
Identity = 263/286 (91.96%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GE E ASKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNT PN TKD +DKT S SGD+E+V       +NDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of CaUC06G107290 vs. ExPASy TrEMBL
Match: A0A1S3CAU7 (U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE=3 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.5e-133
Identity = 263/286 (91.96%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF+
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GE E ASKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVPNTTKDTEDKTMSDSGDQENVSKDVKEQSNDESTPMEQE 287
           LLEDNT PN TKD +DKT S SGD+E+V       +NDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of CaUC06G107290 vs. TAIR 10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A )

HSP 1 Score: 355.9 bits (912), Expect = 3.0e-98
Identity = 190/239 (79.50%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFI 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEAENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             E +  S+  E  +T  V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of CaUC06G107290 vs. TAIR 10
Match: AT1G04210.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 42.4 bits (98), Expect = 7.3e-04
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 47  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 106
           +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  
Sbjct: 181 LDLSFNKIKSLPNEIGYLSSLTFLKVAHNRLMELSPVLA-LLQNLESLDVSNNRLTTLHP 240

Query: 107 IDPLASLPKLQFLSLLDNNITKKPNY 132
           +D L  +P+LQ L+L  N   K P+Y
Sbjct: 241 LD-LNLMPRLQILNLRYN---KLPSY 261

The following BLAST results are available for this feature:

BLAST of CaUC06G107290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907085.1	8.4e-143	96.85	U2 small nuclear ribonucleoprotein A' [Benincasa hispida]	[more]
XP_022960458.1	2.4e-142	96.15	U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 sm...	[more]
XP_023005060.1	7.1e-142	95.80	U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]	[more]
XP_022148876.1	2.5e-139	94.74	U2 small nuclear ribonucleoprotein A' [Momordica charantia]	[more]
XP_004140564.3	4.2e-134	92.66	U2 small nuclear ribonucleoprotein A' [Cucumis sativus] >KAE8646748.1 hypothetic...	[more]

BLAST of CaUC06G107290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43333	4.2e-97	79.50	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g097...	[more]
P09661	6.8e-55	53.78	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=...	[more]
Q4R8Y8	6.8e-55	53.78	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 P...	[more]
P57784	5.8e-54	53.36	U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV...	[more]
Q9BLB6	1.3e-45	45.80	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of CaUC06G107290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H905	1.2e-142	96.15	U2 small nuclear ribonucleoprotein A' OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1KWC8	3.4e-142	95.80	U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC11149816...	[more]
A0A6J1D6P1	1.2e-139	94.74	U2 small nuclear ribonucleoprotein A' OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
E5GB46	6.5e-133	91.96	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 ...	[more]
A0A1S3CAU7	6.5e-133	91.96	U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE...	[more]

BLAST of CaUC06G107290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09760.1	3.0e-98	79.50	U2 small nuclear ribonucleoprotein A	[more]
AT1G04210.1	7.3e-04	38.37	Leucine-rich repeat protein kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 128..146 e-value: 0.0044 score: 26.2
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..173 e-value: 1.8E-80 score: 268.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..286
None	No IPR available	PANTHER	PTHR10552:SF8	BNAC08G13840D PROTEIN	coord: 1..241
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 13..158
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..176 e-value: 1.5E-48 score: 166.1
IPR044640	U2 small nuclear ribonucleoprotein A'	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 1..241
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 89..110 score: 7.049695

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G107290.1	CaUC06G107290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding
molecular_function	GO:0030620	U2 snRNA binding