CaUC06G107010 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G107010
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReverse transcriptase domain-containing protein
LocationCiama_Chr06: 486446 .. 488142 (+)
RNA-Seq ExpressionCaUC06G107010
SyntenyCaUC06G107010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTGTTTTGGGCTTTTGACAGCCAGGGTTGCTTCTCTGTCCAAAGTGCCTACCACCTTGCGTTATCGTTGAGGGAGGCGGCCCATCCATTGTCTTCAGGAAGGACGACTCTTGCTAAATCTTGGATGGATATTTAGAAAGCGGGTGTTATTCCAAAAATTAAATATGTGTGCTGGAGAAGTCTCAATAATATTATCCCTACCTCTTCGAATCTCTTATCAAAAGGAATCTTATCTAACCGGTTGTGTTGTTTTTTTAGGTCTTTCCATGAGACAACATGCCACATCATATGGGAGTGTAAGTTTACTAAGATGGTTTGGTTGTTATACCTCCCTTCTTATGTTGGTCTGGTTGGTGTTGGCAGGGGCAGGTGGTCCCCGTTGGATTATTGGGAGAACCTCAGGAGGGTGAGTTCCAGGCAGGAGCTTGATTGCAGGATGATCATTATGTGGAGTCTTTGGAACATGAGGAAGGGGGTTCGGTTCAGGAAGACCTCACCCTCCCTTGATCGTATTAGGGTGGGGATTGATTCATTCCCCCCCTTTGATGGCGTTGTTGCCAAAGGCCGTGTTAATGGTGTTATCTTTGATCCTCCGACCCACCCCTTCTGATTGGTCTCCCTCTTCTTTTGGGTGTTGGAAGCTGAATGTGGACGCTGCTTGGTCCGACATCAAAGGAAAGGGAGGCTATGGGTGGATCGTTGGAGACCACGAGGGTTGTGCTGTTTTTGGTGGTTGCAAGTTCATTTCTAAAGGCAGTTATGTGAGCCGGCTGGAAGCTGAGGCCATCCTTGCGGGGTTGAAATCGCTGGTTGAGGAGTGCTTAGGTCCTATTCCACCTTTGGAGGTGGAGTCTGATGCTTTGGAGGTTATCAGGCTGCTCAACAGGGAATTGGTTTCCATTGTTGAGATCGGTGTTATTGAGGACATTTTGTATTTTGTGAACTCTGTGAATATTAAATTTTTTTGTCATTGCCCCGTGAGAACAACAAAGCGGCTCATTCGATTGTCATCCTTATTAAGGTGCTCTTTGATATGGAAAGATGTTTTTTCAGATAGTTTGCTCCCGATTCTCGATGAAGAGTCTGTTAGAGAGTAGCTGGTGTTGGTTGATTTGGAACTTGTTTTAAAAAAAAAAAAAATTGTGAAAATTGAAAAGTGATTTCTATTTGTGAGCAGTTGATATTTACTATTTGACTGGCCGATCATAAAATGATTACGTTTTCCAACTACTGCTCATTCCATTATTGCAACTGTGTTCATCTGCTCAGCATCCCTTTCCTTCTTCAGTTTCATTGTAATGCAAACTCTTTCTTCTTTCTTTTTGTAATATTTAAATGCAATCTGACATTTTTTTTTCTTTGTCAAAAGTCTATAACAGGTAAAACGTTTAACTTACTGCGTTGAAGGGGTTTGAATTTATGTAGTATCTTTGTATTCTTACTCTTCTACTCAAGAAATGAGTTGTAGAAACATGAACTTTATAGTCTATCAATGCTTGATTTGTGATTTGAAGTATAGTGTATCATTTGGGATGTGATAACTTTGGGAAACTCGATATTGCTATAGTTACAAGTTATAATTTTGATCAAATTACATGTTTGTGTTTATTGATTTCTGAACTTTTCGAAGTATTTAGCATGTCTTTAAACTTTCAATTTTGTAACTAATAGGTTATTGAACTTTGAATTTTGA

mRNA sequence

ATGAGGGGCAGGTGGTCCCCGTTGGATTATTGGGAGAACCTCAGGAGGGTGAGTTCCAGGCAGGAGCTTGATTGCAGGATGATCATTATGTGGAGTCTTTGGAACATGAGGAAGGGGGTTCGGTTCAGGAAGACCTCACCCTCCCTTGATCGTATTAGGGTGGGGATTGATTCATTCCCCCCCTTTGATGGCGTTGTTGCCAAAGGCCGTCTGAATGTGGACGCTGCTTGGTCCGACATCAAAGGAAAGGGAGGCTATGGGTGGATCGTTGGAGACCACGAGGGTTGTGCTGTTTTTGGTGGTTGCAAGTTCATTTCTAAAGGCAGTTATGTGAGCCGGCTGGAAGCTGAGGCCATCCTTGCGGGGTTGAAATCGCTGGTTGAGGAGTGCTTAGGTCCTATTCCACCTTTGGAGGTGGAGTCTGATGCTTTGGAGGTTATCAGGCTGCTCAACAGGGAATTGGTTTCCATTGTTGAGATCGGTGTTATTGAGGACATTTTGTTATTGAACTTTGAATTTTGA

Coding sequence (CDS)

ATGAGGGGCAGGTGGTCCCCGTTGGATTATTGGGAGAACCTCAGGAGGGTGAGTTCCAGGCAGGAGCTTGATTGCAGGATGATCATTATGTGGAGTCTTTGGAACATGAGGAAGGGGGTTCGGTTCAGGAAGACCTCACCCTCCCTTGATCGTATTAGGGTGGGGATTGATTCATTCCCCCCCTTTGATGGCGTTGTTGCCAAAGGCCGTCTGAATGTGGACGCTGCTTGGTCCGACATCAAAGGAAAGGGAGGCTATGGGTGGATCGTTGGAGACCACGAGGGTTGTGCTGTTTTTGGTGGTTGCAAGTTCATTTCTAAAGGCAGTTATGTGAGCCGGCTGGAAGCTGAGGCCATCCTTGCGGGGTTGAAATCGCTGGTTGAGGAGTGCTTAGGTCCTATTCCACCTTTGGAGGTGGAGTCTGATGCTTTGGAGGTTATCAGGCTGCTCAACAGGGAATTGGTTTCCATTGTTGAGATCGGTGTTATTGAGGACATTTTGTTATTGAACTTTGAATTTTGA

Protein sequence

MRGRWSPLDYWENLRRVSSRQELDCRMIIMWSLWNMRKGVRFRKTSPSLDRIRVGIDSFPPFDGVVAKGRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFGGCKFISKGSYVSRLEAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLNRELVSIVEIGVIEDILLLNFEF
Homology
BLAST of CaUC06G107010 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-11
Identity = 57/176 (32.39%), Postives = 84/176 (47.73%), Query Frame = 0

Query: 18  SSRQELDCRMIIMWSLWNMRKGVRFRKTSPSLDRIRVGIDSFPPFDGVVAK--------- 77
           +S ++LD  +I  W +WN R  V FR    S   +   +  F       ++         
Sbjct: 5   ASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKT 64

Query: 78  --------------GRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFGGCKFISKGSYVSRL 137
                           LN DA+WSD   +GG GWI+   +G  V  G +F+   + V  L
Sbjct: 65  LNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLL 124

Query: 138 EAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLNRELVSIVEIG-VIEDILLL 170
           EA AIL GL++L    LG + PL +E+D+ EV  LLNR+   + + G V+E+IL L
Sbjct: 125 EASAILEGLRNLTN--LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNL 178

BLAST of CaUC06G107010 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-09
Identity = 54/183 (29.51%), Postives = 78/183 (42.62%), Query Frame = 0

Query: 2   RGRWSPLDYWENLRRVSSRQELDCRMIIMWSLWNMRKGVRFRKTSPSLDRIRVGID---- 61
           R  W+  +YWE L   +  +E    MII   +W MR    F+        I++ ID    
Sbjct: 166 RTNWTTKEYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYII 225

Query: 62  --------------SFPPF----DGVVAK--------GRLNVDAAWSDIKGKGGYGWIVG 121
                          F P     D   A+         +LN DAAW       G GWI+ 
Sbjct: 226 NSAGQDTNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILR 285

Query: 122 DHEGCAVFGGCKFISKGSYVSRLEAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLN 155
           D +G  +  GC+ I     ++ LE  AI  GL+++ +E   PI    +ESD+LE I LL+
Sbjct: 286 DEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQEHCRPI---HLESDSLEAIHLLH 345

BLAST of CaUC06G107010 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-09
Identity = 54/183 (29.51%), Postives = 78/183 (42.62%), Query Frame = 0

Query: 2   RGRWSPLDYWENLRRVSSRQELDCRMIIMWSLWNMRKGVRFRKTSPSLDRIRVGID---- 61
           R  W+  +YWE L   +  +E    MII   +W MR    F+        I++ ID    
Sbjct: 131 RTNWTTKEYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYII 190

Query: 62  --------------SFPPF----DGVVAK--------GRLNVDAAWSDIKGKGGYGWIVG 121
                          F P     D   A+         +LN DAAW       G GWI+ 
Sbjct: 191 NSAGQDTNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILR 250

Query: 122 DHEGCAVFGGCKFISKGSYVSRLEAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLN 155
           D +G  +  GC+ I     ++ LE  AI  GL+++ +E   PI    +ESD+LE I LL+
Sbjct: 251 DEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQEHCRPI---HLESDSLEAIHLLH 310

BLAST of CaUC06G107010 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 57/193 (29.53%), Postives = 84/193 (43.52%), Query Frame = 0

Query: 1   MRGRWSPLDYWENLRRVSSRQELDCRMIIMWSLWNMRKGVRFRKTS---PSLDR-----I 60
           +R  W+  D W  L  + S +E+   M+I W +W  R    FR  +     LDR     I
Sbjct: 9   VRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFI 68

Query: 61  RVGIDS---------FPPFDGVVAKGR-------------------LNVDAAWSDIKGKG 120
              ID              DG + +GR                   LN DA+WS+ +  G
Sbjct: 69  NSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVG 128

Query: 121 GYGWIVGDHEGCAVFGGCKFISKGSYVSRLEAEAILAGLKSLVEECLGPIPPLEVESDAL 158
           G GWI+ D  G  V  G   I +   ++ LE   I+ GL+ +  +   PI    +ESD++
Sbjct: 129 GIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPI---YLESDSV 188

BLAST of CaUC06G107010 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-07
Identity = 48/169 (28.40%), Postives = 69/169 (40.83%), Query Frame = 0

Query: 27  MIIMWSLWNMRKGVRFRKTSPSLDRIRVGIDSF--------------------------- 86
           MII W +W MR    F+   P    I++ ID +                           
Sbjct: 13  MIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIRRIE 72

Query: 87  --------PPFDGVVAKGRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFGGCKFISKGSYV 146
                   PP        +LN +AAW      GG GWI+ D +G  +   C+ I     +
Sbjct: 73  DNTGAQWKPPTSN---SWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 132

Query: 147 SRLEAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLNRELVSIVEI 161
           + LE  AI  GL+++ +E   PI    +ESD+LE I LL+R+     EI
Sbjct: 133 TYLEVMAICEGLRAIRQEHCRPI---HLESDSLEAIHLLHRQCQDQTEI 175

BLAST of CaUC06G107010 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 57/176 (32.39%), Postives = 84/176 (47.73%), Query Frame = 0

Query: 18  SSRQELDCRMIIMWSLWNMRKGVRFRKTSPSLDRIRVGIDSFPPFDGVVAK--------- 77
           +S ++LD  +I  W +WN R  V FR    S   +   +  F       ++         
Sbjct: 5   ASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKT 64

Query: 78  --------------GRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFGGCKFISKGSYVSRL 137
                           LN DA+WSD   +GG GWI+   +G  V  G +F+   + V  L
Sbjct: 65  LNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLL 124

Query: 138 EAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLNRELVSIVEIG-VIEDILLL 170
           EA AIL GL++L    LG + PL +E+D+ EV  LLNR+   + + G V+E+IL L
Sbjct: 125 EASAILEGLRNLTN--LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNL 178

BLAST of CaUC06G107010 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 57/193 (29.53%), Postives = 84/193 (43.52%), Query Frame = 0

Query: 1   MRGRWSPLDYWENLRRVSSRQELDCRMIIMWSLWNMRKGVRFRKTS---PSLDR-----I 60
           +R  W+  D W  L  + S +E+   M+I W +W  R    FR  +     LDR     I
Sbjct: 9   VRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFI 68

Query: 61  RVGIDS---------FPPFDGVVAKGR-------------------LNVDAAWSDIKGKG 120
              ID              DG + +GR                   LN DA+WS+ +  G
Sbjct: 69  NSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVG 128

Query: 121 GYGWIVGDHEGCAVFGGCKFISKGSYVSRLEAEAILAGLKSLVEECLGPIPPLEVESDAL 158
           G GWI+ D  G  V  G   I +   ++ LE   I+ GL+ +  +   PI    +ESD++
Sbjct: 129 GIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPI---YLESDSV 188

BLAST of CaUC06G107010 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 48/169 (28.40%), Postives = 69/169 (40.83%), Query Frame = 0

Query: 27  MIIMWSLWNMRKGVRFRKTSPSLDRIRVGIDSF--------------------------- 86
           MII W +W MR    F+   P    I++ ID +                           
Sbjct: 13  MIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIRRIE 72

Query: 87  --------PPFDGVVAKGRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFGGCKFISKGSYV 146
                   PP        +LN +AAW      GG GWI+ D +G  +   C+ I     +
Sbjct: 73  DNTGAQWKPPTSN---SWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 132

Query: 147 SRLEAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLNRELVSIVEI 161
           + LE  AI  GL+++ +E   PI    +ESD+LE I LL+R+     EI
Sbjct: 133 TYLEVMAICEGLRAIRQEHCRPI---HLESDSLEAIHLLHRQCQDQTEI 175

BLAST of CaUC06G107010 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 48/187 (25.67%), Postives = 80/187 (42.78%), Query Frame = 0

Query: 8   LDYWENLRRVSSRQELDCRMIIMWSLWNMRKG-VRFRKTSPSLDRIRVGIDS-------- 67
           +DY++ + R S + +    ++++WS+W  R   V      P   +IR   +S        
Sbjct: 1   MDYFDWIWRDSDQYKRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTN 60

Query: 68  ------------------FPPFDGVVAKGRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFG 127
                              PP   +    +LNVDA W D    GG GWIV D EG     
Sbjct: 61  LGGNLNMEDKNLPRTVGWTPPAQHL---WKLNVDATWMDSLHAGGLGWIVRDSEG----- 120

Query: 128 GCKFISKGSYVSRLEAEAILAGLKSLVEECLGPIPPLEVESDALEVIRLLNRELVSIVEI 167
             +FI      +  ++  + AG+K            +E+ESD LEV+ ++N+  + + E+
Sbjct: 121 --RFIMAECLKALSQSLTLEAGIK------------IEMESDCLEVVNIINKSSMVLTEV 165

BLAST of CaUC06G107010 vs. ExPASy TrEMBL
Match: A0A0P0VD96 (Os01g0967700 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0967700 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 32/84 (38.10%), Postives = 45/84 (53.57%), Query Frame = 0

Query: 60  PPFDGVVAKGRLNVDAAWSDIKGKGGYGWIVGDHEGCAVFGGCKFISKGSYVSRLEAEAI 119
           PP DG +   +LN D A+  +   GGY ++V DH GCAV  G   +         EAEA 
Sbjct: 264 PPVDGNL---KLNFDGAFRAVNKSGGYDFLVRDHRGCAVLAGAGCLEHVHDAFAAEAEAG 323

Query: 120 LAGLKSLVEECLGPIPPLEVESDA 144
           LAGLKS +   +  +   +VE+D+
Sbjct: 324 LAGLKSAISHGINSV---QVETDS 341

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.12.1e-1132.39uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022154990.15.6e-0929.51uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.15.6e-0929.51uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022143317.13.6e-0829.53uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022143535.14.0e-0728.40uncharacterized protein LOC111013412 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV91.0e-1132.39uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG01.8e-0829.53uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1CP262.0e-0728.40uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1D4B63.1e-0525.67uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A0P0VD963.4e-0438.10Os01g0967700 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 68..161
e-value: 5.9E-7
score: 31.6
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 72..153
e-value: 6.9E-10
score: 38.8
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 71..173
e-value: 9.55871E-17
score: 70.0356
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 71..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G107010.1CaUC06G107010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity