CaUC05G106440 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G106440
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	cytochrome c oxidase assembly factor 5
Location	Ciama_Chr05: 36748781 .. 36749896 (-)
RNA-Seq Expression	CaUC05G106440
Synteny	CaUC05G106440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTTTCTTTACTTCTTTCGTCTTCTTCTCCGTCGGGCGCTCACAGCAATCGGTCGTCGCTGTTGCCTTTCACCAGGTAAATTCCTCTGTCACCGTTCGATTCACTTCTTCGTGTTCTTTGCTGTTGTTGCTTCTTTCCTTTTTATTCTGCAACTATATCTTCACTCTCTCCTGTTTTAAAGCTGTCCCCATCAATACATCCATCCCCCGTCTCCATTCCACAGGCTCTCTGTCATGTACCTTGTTTCTGTTCTATTATGTTTACTCCCGTTCTCATCCTTCTTATTTAGCGTATATTCATATTTTATTTTGTATTCAGCTCAATATTCTGCGTCCATGGCTTCTAATTGGAACCCACCTCCCGTTTCTCCGTTTGATGCCATACCTTACCGATATCCCAAGAATTAATCGTTCTATCACATTATTTCGTCGATGTTGATTGATTTATTACCTTACTGTTAGTTATCTCAATAATACAATGCGGTTTTTGCTCTATCTAATATGTATTTGTTGTGTTATTTCCTCACTGACACTGAGTGAGAATTGAGCATACTATTTGGTTTCCAGTTAAGTCCTGCGAGTAGAAATCAGCTCGGTAGATAGTTATTAACAAGACGACTACTAGGGGGAGAAGAGGATTCACGAAGCGAATAATTGTGAAGGAAGATAATTGTGATTCGTCAAGCGAAGATTCAAGACATAACAGGAATCTTTGAGGAGGGGAAAATTAAGGGGAAGGATGTCGAAGTCTTGCAAAGGTTTGGCGATGGAATTGGTCAAGTGTCTCAGCGAATCTGATTGTGTAAAGGTCTTATATAATCATGTTCTCATTGTATATGACTCTCTTTATGTTTGTCAGTATGCAGACATGTATCTTGTGTATCATTAATGGATGTATTAGAACACCCTATCATGAAGAATGTAAACAAGTACATATAGGGTAGTTGCTTTAATTCAACATGGTTTTCAGTCTTTTCTTGTTGCAATTTCAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGCATACCTAGTGAATGTGTGGGATTAAGAGAAACATATTTCAACTGTAAAAGAGGCCAGGCAAGTTTTCATTGA

mRNA sequence

ATGGTCCTTTCTTTACTTCTTTCGTCTTCTTCTCCGTCGGGCGCTCACAGCAATCGGTCGTCGCTGTTGCCTTTCACCAGGGGAAAATTAAGGGGAAGGATGTCGAAGTCTTGCAAAGGTTTGGCGATGGAATTGGTCAAGTGTCTCAGCGAATCTGATTGTGTAAAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGCATACCTAGTGAATGTGTGGGATTAAGAGAAACATATTTCAACTGTAAAAGAGGCCAGGCAAGTTTTCATTGA

Coding sequence (CDS)

ATGGTCCTTTCTTTACTTCTTTCGTCTTCTTCTCCGTCGGGCGCTCACAGCAATCGGTCGTCGCTGTTGCCTTTCACCAGGGGAAAATTAAGGGGAAGGATGTCGAAGTCTTGCAAAGGTTTGGCGATGGAATTGGTCAAGTGTCTCAGCGAATCTGATTGTGTAAAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGCATACCTAGTGAATGTGTGGGATTAAGAGAAACATATTTCAACTGTAAAAGAGGCCAGGCAAGTTTTCATTGA

Protein sequence

MVLSLLLSSSSPSGAHSNRSSLLPFTRGKLRGRMSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQASFH

Homology

[Close]

BLAST of CaUC05G106440 vs. NCBI nr
Match: KAG7031931.1 (hypothetical protein SDJN02_05973 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 3.3e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKVQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQAS 60

Query: 94 F 95
          F
Sbjct: 61 F 61

[Close]

BLAST of CaUC05G106440 vs. NCBI nr
Match: ADN34196.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ  
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQII 60

Query: 94 FH 96
           H
Sbjct: 61 CH 62

[Close]

BLAST of CaUC05G106440 vs. NCBI nr
Match: XP_008446948.1 (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_022139307.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_022139308.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_031741572.1 cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_031741573.1 cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_038889422.1 cytochrome c oxidase assembly factor 5 [Benincasa hispida] >KGN52313.1 hypothetical protein Csa_009226 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 6.2e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. NCBI nr
Match: XP_022956695.1 (cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cytochrome c oxidase assembly factor 5 [Cucurbita maxima] >XP_023534123.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >XP_023534138.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >KAG6601133.1 Cytochrome c oxidase assembly factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. NCBI nr
Match: KYP51355.1 (hypothetical protein KK1_026786 [Cajanus cajan])

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-25
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKV+ R+YREC GEKSPCIPSECVGLRETYFNCKRGQAS
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYRECVGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]

BLAST of CaUC05G106440 vs. ExPASy Swiss-Prot
Match: O42921 (Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16A3.16 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.4e-06
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKR 90
          M +SCK +  +L  CL  SDC+ V+ ++ REC   K   +P EC  L E Y  CKR
Sbjct: 1  MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKR 55

[Close]

BLAST of CaUC05G106440 vs. ExPASy TrEMBL
Match: E5GCJ7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAS 93
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ  
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQII 60

Query: 94 FH 96
           H
Sbjct: 61 CH 62

[Close]

BLAST of CaUC05G106440 vs. ExPASy TrEMBL
Match: A0A6J1CDL1 (cytochrome c oxidase assembly factor 5 OS=Momordica charantia OX=3673 GN=LOC111010254 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. ExPASy TrEMBL
Match: A0A0A0KRS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623760 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. ExPASy TrEMBL
Match: A0A1S3BGA9 (cytochrome c oxidase assembly factor 5 OS=Cucumis melo OX=3656 GN=LOC103489506 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. ExPASy TrEMBL
Match: A0A6J1IEJ6 (cytochrome c oxidase assembly factor 5 OS=Cucurbita maxima OX=3661 GN=LOC111476521 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.7e-26
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          MSKSCKGLAMELVKCLSESDCVKVQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. TAIR 10
Match: AT1G10865.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          M+KSCKGLA ELVKCLSES CVK + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MAKSCKGLAEELVKCLSESICVKGEKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]

BLAST of CaUC05G106440 vs. TAIR 10
Match: AT1G10865.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 34 MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 92
          M+KSCKGLA ELVKCLSES CVK + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MAKSCKGLAEELVKCLSESICVKGEKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQ 58

The following BLAST results are available for this feature:

BLAST of CaUC05G106440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031931.1	3.3e-27	98.36	hypothetical protein SDJN02_05973 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
ADN34196.1	2.8e-26	95.16	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_008446948.1	6.2e-26	100.00	PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_022139307.1...	[more]
XP_022956695.1	1.4e-25	98.28	cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cyto...	[more]
KYP51355.1	6.8e-25	93.33	hypothetical protein KK1_026786 [Cajanus cajan]	[more]

BLAST of CaUC05G106440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42921	7.4e-06	42.86	Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ...	[more]

BLAST of CaUC05G106440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCJ7	1.3e-26	95.16	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A6J1CDL1	3.0e-26	100.00	cytochrome c oxidase assembly factor 5 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0KRS4	3.0e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623760 PE=3 SV=1	[more]
A0A1S3BGA9	3.0e-26	100.00	cytochrome c oxidase assembly factor 5 OS=Cucumis melo OX=3656 GN=LOC103489506 P...	[more]
A0A6J1IEJ6	6.7e-26	98.28	cytochrome c oxidase assembly factor 5 OS=Cucurbita maxima OX=3661 GN=LOC1114765...	[more]

BLAST of CaUC05G106440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10865.1	1.1e-23	82.76	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G10865.2	1.1e-23	82.76	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018793	Cytochrome c oxidase assembly protein PET191	PFAM	PF10203	Pet191_N	coord: 35..91 e-value: 2.7E-17 score: 62.8
IPR018793	Cytochrome c oxidase assembly protein PET191	PANTHER	PTHR28627	CYTOCHROME C OXIDASE ASSEMBLY FACTOR 5	coord: 34..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G106440.1	CaUC05G106440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0005739	mitochondrion