CaUC05G104170 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G104170
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionVacuolar sorting receptor
LocationCiama_Chr05: 34788458 .. 34792074 (-)
RNA-Seq ExpressionCaUC05G104170
SyntenyCaUC05G104170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTAGATGAACGGAAAAGATAGTCGAGTGGCTTGTTTGCATGAGATTGTACCTGGGAAGAAAACTGATTTGTTGTGTAATTTGCGTATTATGTGATATGCTTGCTTGGTTTATAAAGATGAACTACTTTAGTCTATTTCAATTCGACTATCTGCTAGTATTTTTTGGCATCTTTCGCAGGCAAGTTTTCTTCTATCCCTAAATTCTGGCATTTGATTGAGGTAAATGCCATTTTATCAATTGAACCGGAAACTTCTATGGGCAAGGAGGGCTAATGTAAGAAGTGATGGTTGTCGTTTTGCATACGAAACTTTACTGCCAACTTTTGTACAAGGGCTTTTGAAATTCAAGAATAAGTTCAGGTAAGGTAAAATACGAGCTGTATATTTGTAAACTGTAGTTACATTTATTCCCTCCCCTTATGGACTGATTTTCATTTAGATGAAAGTTCCGAGGTTTCCACTACTTGTCCATCCTTCTTGAACTTGCATTGAATATTGCAAATTCCAGAGTACATCTTCAATGGAAGGTCGCTTGTTTGGATCTTTGTTGAGGCAGTTGATGGCAATTTGAATTGTGGTTTTCAGTGAATCAAATGCAAAAGAACCCTGAATCGAAGGATCAATTACGCCCCGTAATCTCAGTACTTCTCCCAAGCCACTTTCAAACTGCAATAACGAATAGCATATAGAAGCCATTAGCATGTGAATTCATATTTGAATTGTGTAGTACTACGCTCTAGAAAATTGCAAACTAATGTTAATGTATTTTCTGTTTTTAAATCTATGAGATACCTCACTCTTCAGATCATCCAGTTCACTCGTGGCTGTGATCGGTCTGCCATTGATGACTTGCAGCAAAATAGCACCAAATTGAAAGATATCTTCCTTCTCCGGGTTCTCGCCTCTGCATTTGGAATCGAATTAGATTATTGTATTGTTCTAGCAAAGATAAAATCTAAACAAGGATGCTACCTTTTTGTTACATTCAACTCACTCTCTGCATTCTGTAAAATTTGAAAATAACCAGTCTTAGAAATTGTTAAAAGTTGCAATCGATCAAAGTATAACTAAAATCTTGTTCAACCTTTAGCGGCATGAGGACGTTGTAATTGCTTATTTTTGCAGTCAGTGTCTCATCCAACAAAACGTTATCAATCTTGATATCGTTCCCAAAGATGCCAGACGCCATTCCAGTATGCAAATGCTGTATTCCCCTGGCAATGCCGATGGTTATTCCCATTCTCTGTGGCCATTTGAGAGCATCCTTCCTTTTCCAATCTGTGTTATGCGAAATAACATTACATTATAACAAGAGTTCATATGAGGCTTTCTGAGTTTAAACTTTGAAGCCAAATGGAGATGGGTTTGTTTTGTTACCTGTAAGACAATCCTTCAATGAGCCGTTGGATATGTATTCATTAACAATGAAGACAGTGCTAGCTGGGTTCAATTGATCCTGATGAGTGAAAGTGCAGTGTCCAAGAACACTGACCAAATGCCGATGCCTCAGATTTGGCAGTTCTTCCATGTGCCGCGCTAAGGCTTGAGGTACAAGTTTTTGCTTTAGTTTAAAGCACTTGATCAGGACCACTGAACCATCAGGCAGCCAACCTTTATATGTCTGCAAGAATTAAACTGAAAACTTCTTATTGAAATTACTTTTCCTCGAGATCTTCACATATTCGAAGTTTGAATCAATTCCTCACCTTTGCTTGGGGTTCTTCAGCGGCCAAGCCTAATGGGTCGAAGTTTCTTGTGACGTCTTCGATTTCCTCCAATGTGAAGACCCGATATGGCGGCAGCCCAAGTGCTGGTAGCCGTGTCTGCGGTACACGTCCTGTTGTAGAATTAAGTTAACAAGAACAAGATAATAATTTGATTTTGGATGAAATAGAACTAAAAGGGGAAGAATATGGGCTTACTGTGAGGAAGGGGGGAGCCACGGACAGAGAGTTTATCAGCTGTAGATTTCTCATATTTGGTCTCTCCCAATCTTCTTCTGTTTCGGATGATTGCACAAACTAACAACAGAACAACAACCGAAATTCCAACAACGCCTCCAATGATTGCAAGCATGAGACCCAGTTTGATGCTAAGTTTCTGTTTCTGTGAGTCACCTGGAGGCTTCACAGCCATTGCTTCCTTATGGCAGTAGGAATAAGTATGCTGGTCCTTCGAGCTTCCACTTGACAAGCAGTTCCAAGAAATATTTACTGTGCGATTTGACGAATTTGGTATGATGCAAGAAGGTAATTTTCCTATCAAAAGGTTGTGTGAAATGTCTACAAACTTAAGGTTTCTGTTGCAAGTTGTGTTAAAAGAGAGTGGCCCACTTAATTGGTTATAAGCTAGGTTGAGATACTGAACTGCAGGTAGAGAGAAAAGTGAAGCATGGATTGGCCCAAGAAACTTATTGTAGGAGATATCTAATAGCTGAAGCTTATTGAATTCCAAGATTCTCGAGGGGATTTCGGATCTGAACAAGTTTTTCCTCAGTATGACGATTACAAGAGTTTCTCCCAGAGAAGGAGCCTTTTGTCCTAGTCGATTTTGTCCTAAATTCAGCTCTTCAAGAACTGCAAGGCCTCTAAGATCTGGAACAGTTCCATTGAGCAAATTGTCAGCCAAAACAAGGCTCTTGAGACTTTGAAGTTTTGAGATTGTTGTAGGGATGCCTCCATAGATATAATTTGAGCTTATGTTAAGCACTTCCAAAGATGAGAGCCTGTTAACTTTGGAAGGAAAAGAACCCCACAATCCCAAGGACACTAATGATAAGACTCTCAGGTTTGAAAGCTTGGTGAGAACAGTGAAGAAGGAATCGATGGAGAAACTATTTGAGAGAGTGTCCCGAGAAGGGATGGAACTCACAGAAACTGATTTTGGAGCTTTAGAAGGAGAGCTTTTGTTTCCAATGACAGTTAATTCTGTTATGTGATTACCAGAACAGGCAATTTTGAGTGAAGAAGAAGGAGGTAAATAGCAGAAGTTGGTCCAGTTTGACCATCCCTGAAGAGCAACAGGATATTCCAGAAGTTTTTGAATCTCAAATAGAATTCTGGTTTCGCTTGGAGGAAGTTGCCCTGTTGAAACTGGAAAGAGAACAGCAAAAATGAAAGCAGGAAACCAAAAAGAAAAAGAAACCCAAGAAGTCTTCATGTTCTTGAAGCTGAAACTCAAAACTATGCTGCAAACCTCATCAGAAAAGCATGCAAAAGAGAGAGCTTTTTGTTTCTAATAAAACAGAAACTGACGAGATAGATCAATGATATGAAAAAGGAAAAGCAAGGAACAAAATTTTATGTGCTTTCAGTAACTACTTTTGCATGAAGGAGAAATTACTTTGAACTTCTTGAAAAATAAAGGGAAAAGCAGAAGCAGTGATTGTTTGGAAAAGAATCAGAGATCTGAAAAAGAAATATAGAAGGAACTCCAGAGTGAGTGAAGCAATCTCAAGGCATTTCCAACAGTCAAAACAAAAATCAAAAGAAGAGATTAAAGAAATCCTAATCATGTGCTACCCAACCCACAATATAAAATTGAACTCTAGTTGCCCTGCCGCACTTCACTCTGACTTTTTCCCATCAGAGTGTACAGAAAAAGTCAACTAA

mRNA sequence

ATGGGCAAGTTTTCTTCTATCCCTAAATTCTGGCATTTGATTGAGATCATCCAGTTCACTCGTGGCTGTGATCGGTCTGCCATTGATGACTTGCAGCAAAATAGCACCAAATTGAAAGATATCTTCCTTCTCCGGGTTCTCGCCTCTGCATTTGGAATCGAATTAGATTATTGTATTTGTCTCATCCAACAAAACGTTATCAATCTTGATATCGTTCCCAAAGATGCCAGACGCCATTCCAGTATGCAAATGCTGTATTCCCCTGGCAATGCCGATGCGGCCAAGCCTAATGGGTCGAAGTTTCTTGTGACGTCTTCGATTTCCTCCAATGTGAAGACCCGATATGGCGGCAGCCCAAGTGCTGGTAGCCGTGTCTGCGAACTAAAAGGGGAAGAATATGGGCTTACTGTGAGGAAGGGGGGAGCCACGGACAGAGATCACCTGGAGGCTTCACAGCCATTGCTTCCTTATGGCAGTAGGAATAAGTATGCTGGTCCTTCGAGCTTCCACTTGACAAGCAGTTCCAAGAAATATTTACTGTGCGATTTGACGAATTTGATTCTCGAGGGGATTTCGGATCTGAACAAGTTTTTCCTCAGTATGACGATTACAAGAGTTTCTCCCAGAGAAGGAGCCTTTTGTCCTAGTCGATTTTGTCCTAAATTCAGCTCTTCAAGAACTGCAAGGCCTCTAAGATCTGGAACAGTTCCATTGAGCAAATTCACTTCCAAAGATGAGAGCCTGTTAACTTTGGAAGGAAAAGAACCCCACAATCCCAAGGACACTAATGATAAGACTCTCAGGTTTGAAAGCTTGGTGAGAACAGTGAAGAAGGAATCGATGGAGAAACTATTTGAGAGAGTGTCCCGAGAAGGGATGGAACTCACAGAAACTGATTTTGGAGCTTTAGAAGGAGAGCTTTTGTTTCCAATGACAGGAAAAGCAGAAGCAGTGATTGTTTGGAAAAGAATCAGAGATCTGAAAAAGAAATATAGAAGGAACTCCAGAGTGAGTGAAGCAATCTCAAGGCATTTCCAACAGTCAAAACAAAAATCAAAAGAAGAGATTAAAGAAATCCTAATCATGTGCTACCCAACCCACAATATAAAATTGAACTCTAGTTGCCCTGCCGCACTTCACTCTGACTTTTTCCCATCAGAGTGTACAGAAAAAGTCAACTAA

Coding sequence (CDS)

ATGGGCAAGTTTTCTTCTATCCCTAAATTCTGGCATTTGATTGAGATCATCCAGTTCACTCGTGGCTGTGATCGGTCTGCCATTGATGACTTGCAGCAAAATAGCACCAAATTGAAAGATATCTTCCTTCTCCGGGTTCTCGCCTCTGCATTTGGAATCGAATTAGATTATTGTATTTGTCTCATCCAACAAAACGTTATCAATCTTGATATCGTTCCCAAAGATGCCAGACGCCATTCCAGTATGCAAATGCTGTATTCCCCTGGCAATGCCGATGCGGCCAAGCCTAATGGGTCGAAGTTTCTTGTGACGTCTTCGATTTCCTCCAATGTGAAGACCCGATATGGCGGCAGCCCAAGTGCTGGTAGCCGTGTCTGCGAACTAAAAGGGGAAGAATATGGGCTTACTGTGAGGAAGGGGGGAGCCACGGACAGAGATCACCTGGAGGCTTCACAGCCATTGCTTCCTTATGGCAGTAGGAATAAGTATGCTGGTCCTTCGAGCTTCCACTTGACAAGCAGTTCCAAGAAATATTTACTGTGCGATTTGACGAATTTGATTCTCGAGGGGATTTCGGATCTGAACAAGTTTTTCCTCAGTATGACGATTACAAGAGTTTCTCCCAGAGAAGGAGCCTTTTGTCCTAGTCGATTTTGTCCTAAATTCAGCTCTTCAAGAACTGCAAGGCCTCTAAGATCTGGAACAGTTCCATTGAGCAAATTCACTTCCAAAGATGAGAGCCTGTTAACTTTGGAAGGAAAAGAACCCCACAATCCCAAGGACACTAATGATAAGACTCTCAGGTTTGAAAGCTTGGTGAGAACAGTGAAGAAGGAATCGATGGAGAAACTATTTGAGAGAGTGTCCCGAGAAGGGATGGAACTCACAGAAACTGATTTTGGAGCTTTAGAAGGAGAGCTTTTGTTTCCAATGACAGGAAAAGCAGAAGCAGTGATTGTTTGGAAAAGAATCAGAGATCTGAAAAAGAAATATAGAAGGAACTCCAGAGTGAGTGAAGCAATCTCAAGGCATTTCCAACAGTCAAAACAAAAATCAAAAGAAGAGATTAAAGAAATCCTAATCATGTGCTACCCAACCCACAATATAAAATTGAACTCTAGTTGCCCTGCCGCACTTCACTCTGACTTTTTCCCATCAGAGTGTACAGAAAAAGTCAACTAA

Protein sequence

MGKFSSIPKFWHLIEIIQFTRGCDRSAIDDLQQNSTKLKDIFLLRVLASAFGIELDYCICLIQQNVINLDIVPKDARRHSSMQMLYSPGNADAAKPNGSKFLVTSSISSNVKTRYGGSPSAGSRVCELKGEEYGLTVRKGGATDRDHLEASQPLLPYGSRNKYAGPSSFHLTSSSKKYLLCDLTNLILEGISDLNKFFLSMTITRVSPREGAFCPSRFCPKFSSSRTARPLRSGTVPLSKFTSKDESLLTLEGKEPHNPKDTNDKTLRFESLVRTVKKESMEKLFERVSREGMELTETDFGALEGELLFPMTGKAEAVIVWKRIRDLKKKYRRNSRVSEAISRHFQQSKQKSKEEIKEILIMCYPTHNIKLNSSCPAALHSDFFPSECTEKVN
Homology
[Close]
BLAST of CaUC05G104170 vs. NCBI nr
Match: GER32194.1 (vacuolar sorting receptor [Striga asiatica])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-09
Identity = 73/229 (31.88%), Postives = 104/229 (45.41%), Query Frame = 0 

Query: 159 SRNKYAGPSSFHLTSSSKKYLLCDLTNLILEGISDLNKFFLSMTITR-VSPREGAFCPSR 218
           +RN   GP S     SS    L  L+   L GISDLN+ F S   TR V PR+G   P  
Sbjct: 258 NRNDGIGPRSLLDDRSS---ALSRLSFSKLSGISDLNELFASERRTRLVVPRDGNLGPRE 317

Query: 219 FCPKFSSSRTARPLRSGTVPLSKFTS-----------------------KDESLLTLEGK 278
           F  + SSSR     RSGTVPLS+ +                        +D   L L GK
Sbjct: 318 FLLRSSSSRGG---RSGTVPLSRLSVRARVATDWGISPSRKLALRLRSWRDLKRLILGGK 377

Query: 279 EPHNPKDTNDKTLRFESLVRTVKKESMEKLFERVSREGMELTETDFGALEGELLFPMTGK 338
            PH+P++T D   R ESLVRTVKKES+E   ER      +L     G  +GE+  P    
Sbjct: 378 GPHSPRETRDSFCRLESLVRTVKKESIENFLERGPPGTEKLAGERVGIRDGEVRLPTMVS 437

Query: 339 AEAVIVWKRIRDLKKK--YRRNSRVSEAISRHFQQSKQKSKEEIKEILI 362
           +   + W  ++ + ++  + R  ++ + +    +    +S     +IL+
Sbjct: 438 S---VTWLSVQTMAREGVWGRKQKLVQLVQVWSEGGNSRSWRAWNKILV 477

[Close]
BLAST of CaUC05G104170 vs. NCBI nr
Match: GER40805.1 (spermidine synthase [Striga asiatica])

HSP 1 Score: 65.9 bits (159), Expect = 9.2e-07
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 0 

Query: 190 GISDLNKFFLSMTITRVSPREGAFCPSRFCPKFSSSRTARPLRSGTVPLSKF-----TSK 249
           GISDLN+ F S   TR+ P++    P+ F  +  SSR  +P RSG VPL +      +S+
Sbjct: 82  GISDLNELFTSERRTRLVPKDRNLRPTEFLLRSRSSRGGKPPRSGAVPLRRLSVRTRSSR 141

Query: 250 DESLLTLEGKEPHNPKDTNDKTLRFESLVRTVKK 279
           D   L L G EPH  ++T D   + +SLVRTVK+
Sbjct: 142 DLKRLILGGGEPHCLRETRDNFCKLDSLVRTVKE 175

[Close]
BLAST of CaUC05G104170 vs. ExPASy TrEMBL
Match: A0A5A7PHK7 (Vacuolar sorting receptor OS=Striga asiatica OX=4170 GN=STAS_08251 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-10
Identity = 73/229 (31.88%), Postives = 104/229 (45.41%), Query Frame = 0 

Query: 159 SRNKYAGPSSFHLTSSSKKYLLCDLTNLILEGISDLNKFFLSMTITR-VSPREGAFCPSR 218
           +RN   GP S     SS    L  L+   L GISDLN+ F S   TR V PR+G   P  
Sbjct: 258 NRNDGIGPRSLLDDRSS---ALSRLSFSKLSGISDLNELFASERRTRLVVPRDGNLGPRE 317

Query: 219 FCPKFSSSRTARPLRSGTVPLSKFTS-----------------------KDESLLTLEGK 278
           F  + SSSR     RSGTVPLS+ +                        +D   L L GK
Sbjct: 318 FLLRSSSSRGG---RSGTVPLSRLSVRARVATDWGISPSRKLALRLRSWRDLKRLILGGK 377

Query: 279 EPHNPKDTNDKTLRFESLVRTVKKESMEKLFERVSREGMELTETDFGALEGELLFPMTGK 338
            PH+P++T D   R ESLVRTVKKES+E   ER      +L     G  +GE+  P    
Sbjct: 378 GPHSPRETRDSFCRLESLVRTVKKESIENFLERGPPGTEKLAGERVGIRDGEVRLPTMVS 437

Query: 339 AEAVIVWKRIRDLKKK--YRRNSRVSEAISRHFQQSKQKSKEEIKEILI 362
           +   + W  ++ + ++  + R  ++ + +    +    +S     +IL+
Sbjct: 438 S---VTWLSVQTMAREGVWGRKQKLVQLVQVWSEGGNSRSWRAWNKILV 477

[Close]
BLAST of CaUC05G104170 vs. ExPASy TrEMBL
Match: A0A5A7Q6C9 (Spermidine synthase OS=Striga asiatica OX=4170 GN=STAS_17497 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-07
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 0 

Query: 190 GISDLNKFFLSMTITRVSPREGAFCPSRFCPKFSSSRTARPLRSGTVPLSKF-----TSK 249
           GISDLN+ F S   TR+ P++    P+ F  +  SSR  +P RSG VPL +      +S+
Sbjct: 82  GISDLNELFTSERRTRLVPKDRNLRPTEFLLRSRSSRGGKPPRSGAVPLRRLSVRTRSSR 141

Query: 250 DESLLTLEGKEPHNPKDTNDKTLRFESLVRTVKK 279
           D   L L G EPH  ++T D   + +SLVRTVK+
Sbjct: 142 DLKRLILGGGEPHCLRETRDNFCKLDSLVRTVKE 175

The following BLAST results are available for this feature:
BLAST of CaUC05G104170 vs. NCBI nr
Match NameE-valueIdentityDescription
GER32194.11.5e-0931.88vacuolar sorting receptor [Striga asiatica][more]
GER40805.19.2e-0742.55spermidine synthase [Striga asiatica][more]
BLAST of CaUC05G104170 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC05G104170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7PHK77.3e-1031.88Vacuolar sorting receptor OS=Striga asiatica OX=4170 GN=STAS_08251 PE=4 SV=1[more]
A0A5A7Q6C94.4e-0742.55Spermidine synthase OS=Striga asiatica OX=4170 GN=STAS_17497 PE=4 SV=1[more]
BLAST of CaUC05G104170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G104170.1CaUC05G104170.1mRNA