CaUC05G100930 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G100930
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 4-like
LocationCiama_Chr05: 31804450 .. 31804943 (+)
RNA-Seq ExpressionCaUC05G100930
SyntenyCaUC05G100930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTAGGACATAGGACAAAACAATGACATTAATTAAATAAACAATCTTCTCTTTAGATTCTTCAAGTCAACTATAGAATCTTATTTTTATTGCAAAAAATCTCGAAATCTTTGAATTTTTTTTTTAGAACAATCCACCTCCAAAAAAAATGGTGGCTGGTGGAGGAATCTCGGGGTGCTCCAACACAAGAAGCATAGTTGTCCACGTCATCACAAGAAGTTTTAATTCGGTATATTTTCATTTTAAATTATAGATTTCGTCCGTAAAATTCTAACTTTATTTTTATTTGATTTATAATTTTAAAATAAAAACTTTGATCATTATATTTAATAAGTTGTAACGTTAGTCGGCCGAGTTGACAAAATACAAAGTCCCTCGTCCTTTAATAATGCTCTCTCTGACCCTTATTTTCTTCTGCATTGCCCGTTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTGGCTTCCAAAAGGGTTGAAAAATAG

mRNA sequence

ATGTTTAACAATCCACCTCCAAAAAAAATGGTGGCTGGTGGAGGAATCTCGGGGTGCTCCAACACAAGAAGCATAGTTGTCCACGTCATCACAAGAAGTTTTAATTCGTCGGCCGAGTTGACAAAATACAAAGTCCCTCGTCCTTTAATAATGCTCTCTCTGACCCTTATTTTCTTCTGCATTGCCCGTTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTGGCTTCCAAAAGGGTTGAAAAATAG

Coding sequence (CDS)

ATGTTTAACAATCCACCTCCAAAAAAAATGGTGGCTGGTGGAGGAATCTCGGGGTGCTCCAACACAAGAAGCATAGTTGTCCACGTCATCACAAGAAGTTTTAATTCGTCGGCCGAGTTGACAAAATACAAAGTCCCTCGTCCTTTAATAATGCTCTCTCTGACCCTTATTTTCTTCTGCATTGCCCGTTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTGGCTTCCAAAAGGGTTGAAAAATAG

Protein sequence

MFNNPPPKKMVAGGGISGCSNTRSIVVHVITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVASKRVEK
Homology
[Close]
BLAST of CaUC05G100930 vs. NCBI nr
Match: XP_022993829.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +T  F S   LTKYK PRPL MLS+TL+  C+  LMIAFDVPNGLYVAS
Sbjct: 389 VTSGFVSEIVLTKYKFPRPL-MLSMTLLVSCVGHLMIAFDVPNGLYVAS 436

[Close]
BLAST of CaUC05G100930 vs. NCBI nr
Match: XP_022956604.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +T  F S   LTKYK PRPL MLS+TL+  C+  LMIAFDVPNGLYVAS
Sbjct: 397 VTSGFVSEIVLTKYKFPRPL-MLSMTLLVSCVGHLMIAFDVPNGLYVAS 444

[Close]
BLAST of CaUC05G100930 vs. NCBI nr
Match: XP_023535761.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +T  F S   LTKYK PRPL MLS+TL+  C+  LMIAFDVPNGLYVAS
Sbjct: 397 VTSGFVSEIVLTKYKFPRPL-MLSMTLLVSCVGHLMIAFDVPNGLYVAS 444

[Close]
BLAST of CaUC05G100930 vs. NCBI nr
Match: KAG6601185.1 (Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +T  F S   LTKYK PRPL MLS+TL+  C+  LMIAFDVPNGLYVAS
Sbjct: 397 VTSGFVSEIVLTKYKFPRPL-MLSMTLLVSCVGHLMIAFDVPNGLYVAS 444

[Close]
BLAST of CaUC05G100930 vs. NCBI nr
Match: XP_004142499.3 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis sativus] >KAE8648849.1 hypothetical protein Csa_008497 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +   F S   LTKYK PRPLI LSLTL+  C+  LMIAFDVPNGLYVAS
Sbjct: 388 VASGFISEIVLTKYKFPRPLI-LSLTLLLSCVGHLMIAFDVPNGLYVAS 435

[Close]
BLAST of CaUC05G100930 vs. ExPASy TrEMBL
Match: A0A6J1K186 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489721 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +T  F S   LTKYK PRPL MLS+TL+  C+  LMIAFDVPNGLYVAS
Sbjct: 389 VTSGFVSEIVLTKYKFPRPL-MLSMTLLVSCVGHLMIAFDVPNGLYVAS 436

[Close]
BLAST of CaUC05G100930 vs. ExPASy TrEMBL
Match: A0A6J1GZI8 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458291 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +T  F S   LTKYK PRPL MLS+TL+  C+  LMIAFDVPNGLYVAS
Sbjct: 397 VTSGFVSEIVLTKYKFPRPL-MLSMTLLVSCVGHLMIAFDVPNGLYVAS 444

[Close]
BLAST of CaUC05G100930 vs. ExPASy TrEMBL
Match: A0A6J1CAV5 (uncharacterized protein LOC111009984 OS=Momordica charantia OX=3673 GN=LOC111009984 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 30 ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
          ++  F S   LTKYK PRPL MLSLTL+  C   LMIAFDVPNGLYVAS
Sbjct: 52 VSSGFVSEIVLTKYKFPRPL-MLSLTLLLSCAGHLMIAFDVPNGLYVAS 99

[Close]
BLAST of CaUC05G100930 vs. ExPASy TrEMBL
Match: A0A5D3CFW3 (Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +   F S   LTKYK PRPLI LSLTL+  C+  L+IAFDVPNGLYVAS
Sbjct: 389 VASGFISEIVLTKYKFPRPLI-LSLTLLLSCVGHLIIAFDVPNGLYVAS 436

[Close]
BLAST of CaUC05G100930 vs. ExPASy TrEMBL
Match: A0A1S3BG09 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103489435 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 30  ITRSFNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           +   F S   LTKYK PRPLI LSLTL+  C+  L+IAFDVPNGLYVAS
Sbjct: 389 VASGFISEIVLTKYKFPRPLI-LSLTLLLSCVGHLIIAFDVPNGLYVAS 436

[Close]
BLAST of CaUC05G100930 vs. TAIR 10
Match: AT2G39210.1 (Major facilitator superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.7e-06
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 40  LTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           L KYK PRPL ML++ L+  C   L+IAF+VP GLYVAS
Sbjct: 406 LIKYKFPRPL-MLTMVLLLSCAGHLLIAFNVPGGLYVAS 443

[Close]
BLAST of CaUC05G100930 vs. TAIR 10
Match: AT2G28120.1 (Major facilitator superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-05
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 34  FNSSAELTKYKVPRPLIMLSLTLIFFCIARLMIAFDVPNGLYVAS 79
           F S   L KYK+PRPL M++L L+  C   L+IAF VP  +Y+AS
Sbjct: 391 FVSEYLLAKYKLPRPL-MMTLVLLLSCAGHLLIAFPVPGSVYIAS 434

The following BLAST results are available for this feature:
BLAST of CaUC05G100930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022993829.11.3e-0667.35protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita maxima][more]
XP_022956604.11.3e-0667.35protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata][more]
XP_023535761.11.3e-0667.35protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita pepo subsp. pepo][more]
KAG6601185.11.3e-0667.35Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_004142499.32.8e-0667.35protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis sativus] >KAE8648849.1 hypothet... [more]
BLAST of CaUC05G100930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC05G100930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K1866.1e-0767.35protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489... [more]
A0A6J1GZI86.1e-0767.35protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1CAV52.3e-0667.35uncharacterized protein LOC111009984 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5D3CFW33.9e-0665.31Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3BG093.9e-0665.31protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103489435 ... [more]
BLAST of CaUC05G100930 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39210.18.7e-0661.54Major facilitator superfamily protein [more]
AT2G28120.14.3e-0551.11Major facilitator superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G100930.1CaUC05G100930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0050896 response to stimulus
cellular_component GO:0016020 membrane