CaUC05G100050 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G100050
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 30990129 .. 30991337 (-)
RNA-Seq ExpressionCaUC05G100050
SyntenyCaUC05G100050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGTACACATGAATTCCACTTTCGGCGACCAGATTGCTACCTCTATTTGCTCTGCGATTTTGAGGGGTTTTTATATAATTACTGTTGAACTCGAACATGACGTCGGGATATTCAACATGAATTATCAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGTAATGTTCAATCTGAAGACAAATTTACAAATTATTTCGATTGTTAAGTTTGTTACGGATGGTTCAATTTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTTGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGGTTAGTAGTGCTGGCCGTTTATGATTGATCGATTGATCGATGGATTCTACTGCTATTTGGTCATTTGCGACTGAATTTTACAGTTCGAATGATTAAATTTTGCAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCGTACGTAACCCTAACTTTCAACCTAATCCACAGTTTTCATTTTCAGTACTTCCAATTTTCAATCGGTGGAATGTAGAGAAAGAATCGGCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGTTCTTTCGACGAAAACCAACAGGCCTCTGCTTTTTCCGGCGAGCTCTGACCATTTAGGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGGTACGTGAATTCATTTTGGAATCAATAATGGATCGTGTCTGTTAACTTGATTCTTTCGTCGTTCCCTGACCGACCTCCTTCTCGTTGAGAGATTAGATCGGCTCACTCGCGACGTGAGGATGGCACGACAGCGTCGTCTTCCAATCTTATTCCCGAAGAAAATACGATCACTGAAAAATTCATCGACATTTCACAGCGGAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

mRNA sequence

ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTTGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGGCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

Coding sequence (CDS)

ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTTGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGGCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGAGAGCAACGTTTCTCCCCAATTTGTCTCCACAAGCAACTCGTCCTGAGTTCCTTGAACGAAAACCGTGTCATCGGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGTAA

Protein sequence

MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPRATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG
Homology
[Close]
BLAST of CaUC05G100050 vs. NCBI nr
Match: KAG7037777.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-05
Identity = 68/199 (34.17%), Postives = 83/199 (41.71%), Query Frame = 0 

Query: 19  ESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLR--------- 78
           E D SEI TLC+AE V++IL E ++ L +     L  +QC SS      L          
Sbjct: 10  EVDLSEITTLCQAENVDEILVEEIKVLALIAPAAL--RQCISSEARRTFLAYVTLIFNLI 69

Query: 79  ----------------RKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATF----SPNLSPL 138
                              RRGS IQQV       LL P SSEHLRAT     +P  S L
Sbjct: 70  LSFRFQRFKISIGERLGDERRGSAIQQVYS----SLLPPESSEHLRATLLSERTPTGSAL 129

Query: 139 AIRSLI------------EAVPRATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSI 177
            I S I            +      F  + S    R   +     H  P   +SLE +SI
Sbjct: 130 NIWSKIVLSGTSGHSRREDGTASVVFFQSSS---RRKYTITENFIHIFPWRDRSLETTSI 189

[Close]
BLAST of CaUC05G100050 vs. ExPASy TrEMBL
Match: A0A0A0L3R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642280 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 85/176 (48.30%), Postives = 95/176 (53.98%), Query Frame = 0 

Query: 1   MGSCEAAVVAMSMAKRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNS 60
           MGSCEAAVVAMSMAKRA E                  + ETLRK             C  
Sbjct: 1   MGSCEAAVVAMSMAKRALEGG---------------FVGETLRKF-----------ACAH 60

Query: 61  SATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPR 120
           +   A    RKNRRG VIQQVNQPLQLPLLSP S++HLRAT   + SP+ +   +     
Sbjct: 61  AIVLAPAAARKNRRGFVIQQVNQPLQLPLLSPASAKHLRAT-KQSFSPICLHKKL----- 120

Query: 121 ATFLPNLSPQATRPEFLERKPCHRCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAG 177
              +  L P               CPLSHQSLE SS VP GDNSGPGNRRTLGV+G
Sbjct: 121 ---VRRLKPYTLTSA--------DCPLSHQSLEISSSVP-GDNSGPGNRRTLGVSG 132

The following BLAST results are available for this feature:
BLAST of CaUC05G100050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037777.13.8e-0534.17Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CaUC05G100050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC05G100050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3R02.2e-2248.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642280 PE=4 SV=1[more]
BLAST of CaUC05G100050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G100050.1CaUC05G100050.1mRNA