CaUC05G099740 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G099740
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pol protein
Location	Ciama_Chr05: 30771064 .. 30771405 (-)
RNA-Seq Expression	CaUC05G099740
Synteny	CaUC05G099740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACATCACAAAGTAGACATAAAAGGTACACTAATGTGAGACGACGAGACCTAGAGTTCGTGGTGGGGGATAAAGTGTTCCCGAAAGTGGCACATATGAAAGGTGTTCTGAGGTTTGCAAGGAAAGGGAAGTTAAGTCTATGTTTCTTTGGGCCATTTGAGATCCTAGAGCGGATTGCCCTTGTGGCTTATCAGTTGGCGTTGGCGTCGTCTCTTTCTGCAAATCCATCCCATATAGTAGACTATGAGCCCTTGCAATTAAATGATAACCTGAGTTATAAGGAGAAGCCTATTCAAATTCTAGCAAGGGAAGTAAAGACTTTACATAATGAGAGATAA

mRNA sequence

ATGCAAACATCACAAAGTAGACATAAAAGGTACACTAATGTGAGACGACGAGACCTAGAGTTCGTGGTGGGGGATAAAGTGTTCCCGAAAGTGGCACATATGAAAGGTGTTCTGAGGTTTGCAAGGAAAGGGAAGTTAAGTCTATGTTTCTTTGGGCCATTTGAGATCCTAGAGCGGATTGCCCTTGTGGCTTATCAGTTGGCGTTGGCGTCGTCTCTTTCTGCAAATCCATCCCATATAGTAGACTATGAGCCCTTGCAATTAAATGATAACCTGAGTTATAAGGAGAAGCCTATTCAAATTCTAGCAAGGGAAGTAAAGACTTTACATAATGAGAGATAA

Coding sequence (CDS)

ATGCAAACATCACAAAGTAGACATAAAAGGTACACTAATGTGAGACGACGAGACCTAGAGTTCGTGGTGGGGGATAAAGTGTTCCCGAAAGTGGCACATATGAAAGGTGTTCTGAGGTTTGCAAGGAAAGGGAAGTTAAGTCTATGTTTCTTTGGGCCATTTGAGATCCTAGAGCGGATTGCCCTTGTGGCTTATCAGTTGGCGTTGGCGTCGTCTCTTTCTGCAAATCCATCCCATATAGTAGACTATGAGCCCTTGCAATTAAATGATAACCTGAGTTATAAGGAGAAGCCTATTCAAATTCTAGCAAGGGAAGTAAAGACTTTACATAATGAGAGATAA

Protein sequence

MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERIALVAYQLALASSLSANPSHIVDYEPLQLNDNLSYKEKPIQILAREVKTLHNER

Homology

[Close]

BLAST of CaUC05G099740 vs. NCBI nr
Match: KAA0061323.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
           M T+QSR K Y +VRR+DLEF VGDKVF KVA M+GVLRF R+GKLS CF GPFEILERI
Sbjct: 46  MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPCFVGPFEILERI 105

Query: 61  ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 113
             VAY+LAL  SLS                +PSH+VDYEPL++++NLSY E+P+++LARE
Sbjct: 106 GPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 165

[Close]

BLAST of CaUC05G099740 vs. NCBI nr
Match: KAA0033251.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1    MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
            M T+QSR K Y +VRR+DLEF VGDKVF KVA M+GVL+F R+GKLS CF GPFEIL+RI
Sbjct: 989  MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLQFERRGKLSPCFVGPFEILDRI 1048

Query: 61   ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 113
             LVAY+LAL  SLS                +PSH+VDYEPL++++NLSY E+P+++LARE
Sbjct: 1049 GLVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 1108

[Close]

BLAST of CaUC05G099740 vs. NCBI nr
Match: KAA0062171.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 1    MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
            MQT+QSR K Y NVRR+DLEF VGDKVF KVA MKGVLRF R+GKLS CF GPFEILERI
Sbjct: 1000 MQTAQSRLKSYANVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPCFVGPFEILERI 1059

Query: 61   ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 112
              VAY+LAL  SLSA               +PSH+VDYEPL++++NLSY  +P+++LARE
Sbjct: 1060 GPVAYRLALPPSLSAVHDVFHVFILRKYVPDPSHVVDYEPLEIDENLSYTGQPVEVLARE 1119

[Close]

BLAST of CaUC05G099740 vs. NCBI nr
Match: KAA0031852.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
           M T+QSRHK Y +VRR+DLEF +GDKVF KVA MKGVLRF R+GKLS  F GPFEILE+I
Sbjct: 1   MHTAQSRHKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILEQI 60

Query: 61  ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 113
             VAY+LAL  SLSA               +PSH+VDYEPL++++NLSY E+P++ILARE
Sbjct: 61  GPVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEILARE 120

[Close]

BLAST of CaUC05G099740 vs. NCBI nr
Match: KAA0035523.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.1e-32
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 1    MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
            MQT+QSR K Y NVRR+DLEF VGDKVF KVA MKGVLRF R+GKLS  F GPFEILERI
Sbjct: 1540 MQTAQSRQKSYANVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERI 1599

Query: 61   ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 112
              VAY+LAL  SLSA               +PSH+VDYEPL++++NLSY E+P+++LARE
Sbjct: 1600 GPVAYRLALPPSLSAVHDVFHVSMFRKYLSDPSHVVDYEPLEIDENLSYTEQPVEVLARE 1659

[Close]

BLAST of CaUC05G099740 vs. ExPASy TrEMBL
Match: A0A5A7SUW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00470 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.7e-33
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1    MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
            M T+QSR K Y +VRR+DLEF VGDKVF KVA M+GVL+F R+GKLS CF GPFEIL+RI
Sbjct: 989  MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLQFERRGKLSPCFVGPFEILDRI 1048

Query: 61   ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 113
             LVAY+LAL  SLS                +PSH+VDYEPL++++NLSY E+P+++LARE
Sbjct: 1049 GLVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 1108

[Close]

BLAST of CaUC05G099740 vs. ExPASy TrEMBL
Match: A0A5A7UZD7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18953G00010 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.7e-33
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
           M T+QSR K Y +VRR+DLEF VGDKVF KVA M+GVLRF R+GKLS CF GPFEILERI
Sbjct: 46  MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPCFVGPFEILERI 105

Query: 61  ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 113
             VAY+LAL  SLS                +PSH+VDYEPL++++NLSY E+P+++LARE
Sbjct: 106 GPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 165

[Close]

BLAST of CaUC05G099740 vs. ExPASy TrEMBL
Match: A0A5A7SL88 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28703G00010 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.8e-33
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
           M T+QSRHK Y +VRR+DLEF +GDKVF KVA MKGVLRF R+GKLS  F GPFEILE+I
Sbjct: 1   MHTAQSRHKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILEQI 60

Query: 61  ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 113
             VAY+LAL  SLSA               +PSH+VDYEPL++++NLSY E+P++ILARE
Sbjct: 61  GPVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTEQPVEILARE 120

[Close]

BLAST of CaUC05G099740 vs. ExPASy TrEMBL
Match: A0A5A7V905 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005490 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.8e-33
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 1    MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
            MQT+QSR K Y NVRR+DLEF VGDKVF KVA MKGVLRF R+GKLS CF GPFEILERI
Sbjct: 1000 MQTAQSRLKSYANVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPCFVGPFEILERI 1059

Query: 61   ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 112
              VAY+LAL  SLSA               +PSH+VDYEPL++++NLSY  +P+++LARE
Sbjct: 1060 GPVAYRLALPPSLSAVHDVFHVFILRKYVPDPSHVVDYEPLEIDENLSYTGQPVEVLARE 1119

[Close]

BLAST of CaUC05G099740 vs. ExPASy TrEMBL
Match: A0A5A7SY75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001800 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 1    MQTSQSRHKRYTNVRRRDLEFVVGDKVFPKVAHMKGVLRFARKGKLSLCFFGPFEILERI 60
            MQT+QSR K Y NVRR+DLEF VGDKVF KVA MKGVLRF R+GKLS  F GPFEILERI
Sbjct: 1540 MQTAQSRQKSYANVRRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERI 1599

Query: 61   ALVAYQLALASSLSA---------------NPSHIVDYEPLQLNDNLSYKEKPIQILARE 112
              VAY+LAL  SLSA               +PSH+VDYEPL++++NLSY E+P+++LARE
Sbjct: 1600 GPVAYRLALPPSLSAVHDVFHVSMFRKYLSDPSHVVDYEPLEIDENLSYTEQPVEVLARE 1659

The following BLAST results are available for this feature:

BLAST of CaUC05G099740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061323.1	1.4e-32	61.42	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033251.1	1.4e-32	60.63	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062171.1	1.8e-32	63.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031852.1	1.8e-32	62.20	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035523.1	3.1e-32	63.49	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CaUC05G099740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC05G099740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUW2	6.7e-33	60.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7UZD7	6.7e-33	61.42	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18953G00010 ...	[more]
A0A5A7SL88	8.8e-33	62.20	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28703G00010 ...	[more]
A0A5A7V905	8.8e-33	63.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SY75	1.5e-32	63.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]

BLAST of CaUC05G099740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 2..111
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 2..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G099740.1	CaUC05G099740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity