CaUC05G097930 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G097930
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Ciama_Chr05: 29175982 .. 29178365 (-)
RNA-Seq Expression	CaUC05G097930
Synteny	CaUC05G097930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTATTTACGTTCACCCATCCAAAAGTAAGAAGGTTTCGCAAGCGGTTCTTCGAGAGCTCGGCGCTATGCTTTTAAAGTAAGACTTCTTTAAGGCTCTCGACAATTCTAGTGTCTAGTCTCTTTCAATCACAACCTTTTCCAGCTATTGACAGTGTTGCTTTGTTTGAATTGTTTTGTTGAATATCTTGATTGGGGATACTATGTGTTAATGACAGAGTTATACAAGTACAATCTTGCATTTAGCCGCCCTTTTAACCTAGAATTCAGATTCAGTTTTAGCTTAGAATTAGATGATTATTGTTTCTTTTCGCATTGCTATCAAGTGGATTTTTTTCTTTGCTGGCTTGCTATTCTGTACGGAAGAAATAAACACCTGGGTTGTGCTGTTGTTTATGAACTGATAATGTAAGCAGCGAGAATTTGAAAATAATGAAATCAAAGTTGTATTTCGTTTTCAAATATATGTTTGATAACATGTTAAGATATTGGATTCTAATTTAAACAATTGTTTAAAATGTGATTAATACTATATACTTATAAGTAATAAAACTAGTTGTATTTACTAATATTTAGTTGATAAAAAAATTATTATTAATTTATCTATGAATATGATTTATGCGGAAAAAAAATTTCTATACTTATTTTCTTGTTATATTATATAATTTATAATACATTACATGCACCTGTTATATTTTTAAAAAAGGAATTGAGTTTATAACATGACATATTCTATTTTTAAATGTTTTTATTTTTTTAATATAATTCTGCATTTCAAATTTTAATATTCAAATTTTGGATACCATGGAAATATAAAAATGTTGTTTTTAGTATTTGTACTGTTTGAATCACAAAATCCAAAATCAATTTTTAGAAATAGAATTCAAGTTGTCTGCCAAACACATATTTTCCGAACTCAGTAAATTTGAAAATATAAAATAGAATTTAGATTCTCTACCAAATAGATTCTAAGTCTCTGTAACTCTATTTTTTGAACTCAAAGGCGCGAAGTTAAAAACTTCTAGTGATTGTCATTGCTGCTTCTTTTGCTCCCATTTGATGAGTATTCAAGTTCATTGATAGGGCAGGTACCTGTGAAATTCGATCATTAACTGCATTTTTTTTGTATTGTGTTCCTCGTGTAGATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAAGCCAAAATTGTTGATAAAAATGGGAAGATTCTATCTGGAGTGCATCCCTATTTTGGTGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAATATGCTATTAGGTTGGTTTTATAATTCTCATTGTATGTGAAGGAGTTCGATTTGTGATTGGGTCTCTCCATTGTTTCCACTAGGAAAACGACACATCAAGTTGTTAATTAACAAACTTGCATTTTAACATTGTTAAGGTAGTTCATTGGATTATGATGGTAGACATATTAAATTGACTAATAGGAGTCCAAATTTGTTATTCATGCTTTGCTGATAGTTTTGTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTCGGTTTTGCTTCTGCGGTAATAACCGATAAAGACATTCGCGACGAATTCAAGCATAGAACAGTATGTTTTCTTCAATGTACTTGTGAATTCATACCTTTCCCTTTGTTAGACATATAAGAAGGAAGTTTTTATGTTCTTGTCCTGATTGTATTGTGCATTGATTTTGACATAGAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTATGGTGAAGAGGTTAGATTTCTTTCCCTTTAATTACGCTTATTCTGTAACATTTAAGTGGAAAGTTAGTTTTCATCCAAATAATTGAGGGCCGGAACACCAAGCTCACATCCGATGGATAGCCTGCCATATTTATTAATATTTCCTGATTCCTGTTCTTCTTCAGCAATCTAAATACCTTGATGATGTAACAAGTGACTTAATTCAAACTTGCAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTAGGTCCATCTTACACAGGGAGCATCCATTGGTTGGAGAAGAATTTGGTTGAAGGTTCAATAACTAATAGGCAAGAAACAAAATTCTAGGACGTTTTGTGCTATAATCCCCAAATCCCTTGTTCTGATCTCTTTCGAATTAATTTTGTAGCAGTAAAAAGAAGACGAGAGAAAAAGAGGGAGAAGTGATGTTGCAGGATAGCTTTGCCACGGATCCAAATGCACGTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

mRNA sequence

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTATTTACGTTCACCCATCCAAAAGTAAGAAGGTTTCGCAAGCGGTTCTTCGAGAGCTCGGCGCTATGCTTTTAAAATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAAGCCAAAATTGTTGATAAAAATGGGAAGATTCTATCTGGAGTGCATCCCTATTTTGGTGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAATATGCTATTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTCGGTTTTGCTTCTGCGGTAATAACCGATAAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTATGGTGAAGAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTAGGTCCATCTTACACAGGGAGCATCCATTGGTTGGAGAAGAATTTGGTTGAAGGCAAGAAACAAAATTCTAGGACCAGTAAAAAGAAGACGAGAGAAAAAGAGGGAGAAGTGATGTTGCAGGATAGCTTTGCCACGGATCCAAATGCACGTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

Coding sequence (CDS)

ATGGAGGGGCTCAAGGTTTCGGATGCTAATATGGTTATTTACGTTCACCCATCCAAAAGTAAGAAGGTTTCGCAAGCGGTTCTTCGAGAGCTCGGCGCTATGCTTTTAAAATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAAGCCAAAATTGTTGATAAAAATGGGAAGATTCTATCTGGAGTGCATCCCTATTTTGGTGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAATATGCTATTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTCGGTTTTGCTTCTGCGGTAATAACCGATAAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACAATTTATGGTGAAGAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTAGGTCCATCTTACACAGGGAGCATCCATTGGTTGGAGAAGAATTTGGTTGAAGGCAAGAAACAAAATTCTAGGACCAGTAAAAAGAAGACGAGAGAAAAAGAGGGAGAAGTGATGTTGCAGGATAGCTTTGCCACGGATCCAAATGCACGTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

Protein sequence

MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEFKHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNLVEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS

Homology

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BLAST of CaUC05G097930 vs. NCBI nr
Match: XP_038898978.1 (uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida])

HSP 1 Score: 393.7 bits (1010), Expect = 1.1e-105
Identity = 206/234 (88.03%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           M+GLKVSDANMV+YVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKI+DK  KI
Sbjct: 1   MDGLKVSDANMVVYVHPSKSKKVSQAVLRVLGAMLLKFDEKFEGVLLAYEAKIIDKIAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNML+EGKVVKLRQESIHVIV GFASAVIT++DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLVEGKVVKLRQESIHVIVLGFASAVITNEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHI+GSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHIAGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG   +S  SKKK RE EGEVMLQDS AT+ NA ILNNDHQSKTKKQKTTRIS
Sbjct: 181 VEGTVTSS--SKKKMRENEGEVMLQDSVATEVNALILNNDHQSKTKKQKTTRIS 232

[Close]

BLAST of CaUC05G097930 vs. NCBI nr
Match: XP_008466499.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_016903501.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >KAA0063270.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa] >TYK31504.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 2.2e-104
Identity = 207/234 (88.46%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG    S +SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSV--SMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of CaUC05G097930 vs. NCBI nr
Match: XP_008466500.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo])

HSP 1 Score: 387.9 bits (995), Expect = 6.3e-104
Identity = 206/234 (88.03%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG   +   SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEG---SVSMSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 230

[Close]

BLAST of CaUC05G097930 vs. NCBI nr
Match: XP_022148351.1 (uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncharacterized protein LOC111016757 [Momordica charantia])

HSP 1 Score: 387.9 bits (995), Expect = 6.3e-104
Identity = 199/234 (85.04%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+ KI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIV GFASA ITD+DIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKH EEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           +EG   + R  +KKTR+ EGE +LQDS ATD NA ILNNDHQSKTKKQKT+RIS
Sbjct: 181 IEGSVTDRR--RKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of CaUC05G097930 vs. NCBI nr
Match: XP_011652444.1 (uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737672.1 uncharacterized protein LOC101216589 [Cucumis sativus] >KGN60019.1 hypothetical protein Csa_001209 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 202/234 (86.32%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHH+IKVGTMI+ +VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG   +   SK+K RE EG V LQDS  TD NA ILNNDHQ KTKKQK TRIS
Sbjct: 181 VEG---SVTMSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of CaUC05G097930 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 37/163 (22.70%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 10  NMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIVDKNGKILSGVHPYF 69
           ++ + + P  S+    A+   + +M+L    +  G++LAY+  + ++K+ K++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  GVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDI-RDEFKHRTKHG 129
            + ++  +L+FSPK    LEGK+  +    I +++ G  +A I  K I +D         
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMFVSRAHKHHVIKVGTMIQFMVKSFDEE--ILHISGSLGPS 169
           EE    + +  ++++ G  ++F+V     E  +  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

[Close]

BLAST of CaUC05G097930 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 207/234 (88.46%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG    S +SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSV--SMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of CaUC05G097930 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 207/234 (88.46%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG    S +SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGSV--SMSSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 231

[Close]

BLAST of CaUC05G097930 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.0e-104
Identity = 199/234 (85.04%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+ KI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIV GFASA ITD+DIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKH EEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           +EG   + R  +KKTR+ EGE +LQDS ATD NA ILNNDHQSKTKKQKT+RIS
Sbjct: 181 IEGSVTDRR--RKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of CaUC05G097930 vs. ExPASy TrEMBL
Match: A0A1S3CRF8 (uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.0e-104
Identity = 206/234 (88.03%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMI+F+VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG   +   SKKK RE EG VMLQD+  TD NA IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEG---SVSMSKKKMRENEGGVMLQDTVGTDVNAVIL-NDHQPKTKKQKTTRIS 230

[Close]

BLAST of CaUC05G097930 vs. ExPASy TrEMBL
Match: A0A0A0LGG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.8e-104
Identity = 202/234 (86.32%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLKVSDANMV+YVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKI+DKN KI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIV GFASAVIT +DIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           KHRTKHGEEMFVSRAHKHH+IKVGTMI+ +VKSFDEEILHISGSL PS+TGSIHWLEKN 
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGKKQNSRTSKKKTREKEGEVMLQDSFATDPNARILNNDHQSKTKKQKTTRIS 235
           VEG   +   SK+K RE EG V LQDS  TD NA ILNNDHQ KTKKQK TRIS
Sbjct: 181 VEG---SVTMSKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of CaUC05G097930 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-58
Identity = 104/194 (53.61%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K  KI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIV GF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           K+R + GE  FVSR+HK H +K+GTM++  V+SFDEE++HI+GSL P  TG + WLEK  
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGKKQNSRTSKKK 195
            E    +    ++K
Sbjct: 181 EEALPTDRDHKRRK 194

[Close]

BLAST of CaUC05G097930 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-58
Identity = 104/194 (53.61%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIVDKNGKI 60
           MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K  KI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVFGFASAVITDKDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIV GF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIQFMVKSFDEEILHISGSLGPSYTGSIHWLEKNL 180
           K+R + GE  FVSR+HK H +K+GTM++  V+SFDEE++HI+GSL P  TG + WLEK  
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGKKQNSRTSKKK 195
            E    +    ++K
Sbjct: 181 EEALPTDRDHKRRK 194

The following BLAST results are available for this feature:

BLAST of CaUC05G097930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898978.1	1.1e-105	88.03	uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]	[more]
XP_008466499.1	2.2e-104	88.46	PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_008466500.1	6.3e-104	88.03	PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo]	[more]
XP_022148351.1	6.3e-104	85.04	uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncha...	[more]
XP_011652444.1	1.4e-103	86.32	uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharact...	[more]

BLAST of CaUC05G097930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	1.1e-05	22.70	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of CaUC05G097930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5I5	1.0e-104	88.46	uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E6A0	1.0e-104	88.46	Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa...	[more]
A0A6J1D5Y9	3.0e-104	85.04	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A1S3CRF8	3.0e-104	88.03	uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LGG8	6.8e-104	86.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1	[more]

BLAST of CaUC05G097930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	1.1e-58	53.61	DNA-directed RNA polymerases	[more]
AT1G75670.2	1.1e-58	53.61	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..234 e-value: 6.9E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..234
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..227
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 2.3E-6 score: 29.3
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G097930.1	CaUC05G097930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity