CaUC05G096810 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G096810
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ribosomal RNA large subunit methyltransferase H
Location	Ciama_Chr05: 28118178 .. 28121046 (-)
RNA-Seq Expression	CaUC05G096810
Synteny	CaUC05G096810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGCTTCTCCCTCAGGTATCTTCTTCTTCTTCTTCCTCTTCTCTATAAGACAATGAGAGAAACAAAAACCCTAGAATTTGACCCAGGTTTTGTTCGTCCATGTTCTTACCGGCGATGTGTAATGTTTTCTCCGATTTTGAGTTTTCAGGTGGACGTTGCAAGTACACCGGTCAATCTCTGGTACATTTATCGTTTCTTTCGTTAAATTTTAGTTTCGTTTTGGTTCCATTTCCGCATCTCAATTGTTTGCTTCTTGTGATTCGTTTTCTATTCGTTTTGCAATTCCAGTTTGTTAAATTAATTTTATATCTGTTATTTGGTTGAGTTTATATTCTGTGAGAAGAATGAGGATGATTGAATTCAGTATGTTTGAGGCTCCGAATGGTTGAATTTTAATATGAGAGTGGTTATATGGACGATGGACAGAGAGCGGTGCCAATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTCGTTGATGAGTATATTGAAAAGCTCAAGAACTACTGTATTGTTGAAGATGTTCAACTGCGGTCAAATCCTAGGAATGCGCGGTATGTGATTGTGTGGTCGATGTTAGTTTGTAAATTTTGTTTAATTACGTTACGATATCTGCTGAATGAATCAACGATGCTAGTCTTAATTAGATACTTTCATTCTGCGTATTGGTACTTGAATTTTAGGGATCCGAGAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTGACGATTGGGTTTATCTCTCAACATTCTTTTTCGTCGGATCATCACATATCTTGTTATTATGGCTGTGCTCGTTTACTTTCTAGTTCAGAACTCGACCTCTTTCTCAATTTTGTCTGTTAAAAATGTGAAAGAAATTGCATTCCGGAACCTTTTTACATTAGAAAGATGGGTCATAGTGGTTATTTTCCAGGGAGTAAATATAGGTGGCAATGTTTTTTTGTTTTGCTTTTGTTTTTTCCCTTTTTAATTCAACCAATGTGGGATAGGGGGATTTGGACCTCCAACTTCAAAAGAAAGAGTACGTGCCAATTATCATAGAACTTGTTTCTCTTTCTGTAGAATGTTTTATAGTGCTGGTGCTAGTGCTTACTATCCCCATTCTGCATATGCACCGGCAGGTTGTGATGTTGGATGAGAATGGGAAGGAGATGTCCTCCGAGCAGATGGCCGACTTGGTGGCAGATGCAGGCATTACAGTGTGTACCATCCCCAATTCAAATCAAATTGGTCGCTTCATTATATTATCAGTTCATTGCTAATGGACAGTATCCATGACACTTAAATCTTCAAAGTTAGTTGCTAAGGAGTTTTGAATGGAAATTGAAACTTTTGCTTATTCTCAGTTTAACCAGCTTACATGTTCCACTTCCATTTCAGTCTAGATCTGAGCATGTAACAGTCTATTGCTTTCTAATTTTATACGATGGAATTGCACAGATGGCTAGAAGTAGAACAATATGTGGAGTATTTTAGGTTTTCTTAGCCTCATAAAGGTTTCCAATTATCACCGTGACCCAATTGTTTCTGAAAACAACTTTAATAGACCTATGGGGGTATGTCCAATATGGACATGGCATTTTGTAGATGTTCTTTGATAAGTACTGTTTCCTTATGTTTCTTCTTCTCTGCAGGGTGCTTCAAGATTATCATTTTGCATTGGTGGGCCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCTATCAAGCTTTCCTCCATGGTCTTAAATCATCAAATTGCACTACTGGTGCTTATGGAACAACTGTACAGGTGTTTTTTTTCCCCTTAATCATATGTGCCTTTTGAGTTCCACTTCATTTGTATCGTATGTGATGACATCAAATGCTTTTGAAGCAGAGTTATCCAAGAACCACATATGTATGGAATATCCGTATCCATTAATCGAGAGATGTTTAGTTGGTTAAACTGATGTGCCGATGATAATGAATTCAACAGTTTGGACATACAAATCTATTATCCCATCAAACTTCCCGTTTGGTTTACACCAGCCAAAATCTCTCTCCCTCCATCTGCCCTGCACCTAGATTCTACTCAAACCTCATAGCTTATGTATAGCTGCAAAATGTTTTGAAATTTAATTTCCAGACTTAAATTTGTAATTTTAGCAACCATTTTGAAACTTTTGAAATCAAACTACTTTCTTTCACACATGTACTTCAAAATCCAACACAAAACACACACTGCGATCTTGCATTTTGAAGTTTGTTGCATAAATGGTAAACTTTAAATATATAATACTTGTTCTCAATGCATTTGTGTTATTTTTAGGTCATGGACTATTCTAAAAGGTCAGAAGTACCATCATTAGCAGTAGCAGCAGCTCCTATGGCAGCTTAGCGGTATTTTGGCTTGATATGTTACATCTTTAGTTGTTAAAGCTTGGTACAGTAGTGATAAACCATTTCCTATCTGTTACATCTTCACAATAGAAGGAAAAGTTAAGTCTGTATAAAGTCGATCTATTATTGCCGTTATTGAGGAAACTTTGTTGCTTGTTTTGTCCAAAGCATCTCCCTCCTGATATTTCATGTAGTAATAATATAAATGTCTATTACTCTTGTAAGCATGTTAAGTTTTAATGGGTCGAAGAATTTGTCGACGAATTTGATCCCGAATTAAGGAAATGAATAGATGTCTTGACCATTGAGTTAGTATTAGCTTGGGAATACTTGTTTTATACCATATTTGCTCGTGGATTTATGATGTAACGAATGTTAAGAAAATCCGTGAGATATTAATATATTAGGAATACTAGATGTCAAGATATTCGTATATTTAGCTTGTGCATATAATTTTGTTTTGT

mRNA sequence

TCTGCTTCTCCCTCAGGTATCTTCTTCTTCTTCTTCCTCTTCTCTATAAGACAATGAGAGAAACAAAAACCCTAGAATTTGACCCAGGTTTTGTTCGTCCATGTTCTTACCGGCGATGTGTAATGTTTTCTCCGATTTTGAGTTTTCAGGTGGACGTTGCAAGTACACCGGTCAATCTCTGAGAGCGGTGCCAATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTCGTTGATGAGTATATTGAAAAGCTCAAGAACTACTGTATTGTTGAAGATGTTCAACTGCGGTCAAATCCTAGGAATGCGCGGGATCCGAGAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTGACGATTGGGGGGATTTGGACCTCCAACTTCAAAAGAAAGAGTACGTGCCAATTATCATAGAACTTGTTTCTCTTTCTGTAGAATGTTTTATAGTGCTGGTGCTAGTGCTTACTATCCCCATTCTGCATATGCACCGGCAGGTTGTGATGTTGGATGAGAATGGGAAGGAGATGTCCTCCGAGCAGATGGCCGACTTGGTGGCAGATGCAGGCATTACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGGCCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCTATCAAGCTTTCCTCCATGGTCTTAAATCATCAAATTGCACTACTGGTGCTTATGGAACAACTGTACAGAGTTATCCAAGAACCACATATGTATGGAATATCCGTCATGGACTATTCTAAAAGGTCAGAAGTACCATCATTAGCAGTAGCAGCAGCTCCTATGGCAGCTTAGCGGTATTTTGGCTTGATATGTTACATCTTTAGTTGTTAAAGCTTGGTACAGTAGTGATAAACCATTTCCTATCTGTTACATCTTCACAATAGAAGGAAAAGTTAAGTCTGTATAAAGTCGATCTATTATTGCCGTTATTGAGGAAACTTTGTTGCTTGTTTTGTCCAAAGCATCTCCCTCCTGATATTTCATGTAGTAATAATATAAATGTCTATTACTCTTGTAAGCATGTTAAGTTTTAATGGGTCGAAGAATTTGTCGACGAATTTGATCCCGAATTAAGGAAATGAATAGATGTCTTGACCATTGAGTTAGTATTAGCTTGGGAATACTTGTTTTATACCATATTTGCTCGTGGATTTATGATGTAACGAATGTTAAGAAAATCCGTGAGATATTAATATATTAGGAATACTAGATGTCAAGATATTCGTATATTTAGCTTGTGCATATAATTTTGTTTTGT

Coding sequence (CDS)

ATGTTCTTACCGGCGATGTGTAATGTTTTCTCCGATTTTGAGTTTTCAGGTGGACGTTGCAAGTACACCGGTCAATCTCTGAGAGCGGTGCCAATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTACAGCTTCTCGTTGATGAGTATATTGAAAAGCTCAAGAACTACTGTATTGTTGAAGATGTTCAACTGCGGTCAAATCCTAGGAATGCGCGGGATCCGAGAGCTCAGGTTGATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTGACGATTGGGGGGATTTGGACCTCCAACTTCAAAAGAAAGAGTACGTGCCAATTATCATAGAACTTGTTTCTCTTTCTGTAGAATGTTTTATAGTGCTGGTGCTAGTGCTTACTATCCCCATTCTGCATATGCACCGGCAGGTTGTGATGTTGGATGAGAATGGGAAGGAGATGTCCTCCGAGCAGATGGCCGACTTGGTGGCAGATGCAGGCATTACAGGTGCTTCAAGATTATCATTTTGCATTGGTGGGCCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACTTATCTATCAAGCTTTCCTCCATGGTCTTAAATCATCAAATTGCACTACTGGTGCTTATGGAACAACTGTACAGAGTTATCCAAGAACCACATATGTATGGAATATCCGTCATGGACTATTCTAAAAGGTCAGAAGTACCATCATTAGCAGTAGCAGCAGCTCCTATGGCAGCTTAG

Protein sequence

MFLPAMCNVFSDFEFSGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNARDPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPILHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRVIQEPHMYGISVMDYSKRSEVPSLAVAAAPMAA

Homology

[Close]

BLAST of CaUC05G096810 vs. NCBI nr
Match: XP_038896821.1 (putative RNA methyltransferase At5g10620 isoform X2 [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 1.7e-70
Identity = 153/208 (73.56%), Postives = 157/208 (75.48%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGG CKYTGQS+RAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYC +EDV LRSNPRNAR
Sbjct: 14  SGGGCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCHIEDVLLRSNPRNAR 73

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DPRAQVDDEDMAVVNLLKSDDW                                      
Sbjct: 74  DPRAQVDDEDMAVVNLLKSDDW-------------------------------------- 133

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKEMSSEQMADLVADAG TGASRLSFCIGGPYGHGQQLRQRANLSIK
Sbjct: 134 ------VVMLDENGKEMSSEQMADLVADAGTTGASRLSFCIGGPYGHGQQLRQRANLSIK 177

Query: 196 LSSMVLNHQIALLVLMEQLYRVIQEPHM 224
           LSSMVLNHQIALLVLMEQLYRV+   H+
Sbjct: 194 LSSMVLNHQIALLVLMEQLYRVLVLYHI 177

[Close]

BLAST of CaUC05G096810 vs. NCBI nr
Match: XP_022131264.1 (putative RNA methyltransferase At5g10620 isoform X2 [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-68
Identity = 148/201 (73.63%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYT QS+RAVPIRVLTVGKKRSRGVQL+VDEYIEKLK+YC VEDVQLRSNPRNAR
Sbjct: 18  SGGRCKYTAQSVRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNAR 77

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DPRAQVDDEDMAVVNLLKSDDW                                      
Sbjct: 78  DPRAQVDDEDMAVVNLLKSDDW-------------------------------------- 137

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKEMSSE+MA+LVADAG TGASRLSFCIGGPYGHGQQLRQRANL+IK
Sbjct: 138 ------VVMLDENGKEMSSERMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLTIK 174

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 198 LSSMVLNHQIALLVLMEQLYR 174

[Close]

BLAST of CaUC05G096810 vs. NCBI nr
Match: XP_022159857.1 (putative RNA methyltransferase At5g10620 isoform X1 [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-68
Identity = 148/201 (73.63%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYT QS+RAVPIRVLTVGKKRSRGVQL+VDEYIEKLK+YC VEDVQLRSNPRNAR
Sbjct: 20  SGGRCKYTAQSVRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNAR 79

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DPRAQVDDEDMAVVNLLKSDDW                                      
Sbjct: 80  DPRAQVDDEDMAVVNLLKSDDW-------------------------------------- 139

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKEMSSE+MA+LVADAG TGASRLSFCIGGPYGHGQQLRQRANL+IK
Sbjct: 140 ------VVMLDENGKEMSSERMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLTIK 176

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 200 LSSMVLNHQIALLVLMEQLYR 176

[Close]

BLAST of CaUC05G096810 vs. NCBI nr
Match: XP_008466330.1 (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331.1 PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-68
Identity = 146/201 (72.64%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYTGQS+RAVPIRVLTVGKKRSRGVQLLVDEYI+KLKNYC VEDVQLRSNPRNAR
Sbjct: 14  SGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNAR 73

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DP+AQ+DDED+AVVNLLKSDDW                                      
Sbjct: 74  DPKAQIDDEDVAVVNLLKSDDW-------------------------------------- 133

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKE+SSEQMA+LVADAG TGASRLSFCIGGPYGHGQ+LR+RANLSIK
Sbjct: 134 ------VVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERANLSIK 170

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 194 LSSMVLNHQIALLVLMEQLYR 170

[Close]

BLAST of CaUC05G096810 vs. NCBI nr
Match: XP_011652513.1 (putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-67
Identity = 146/201 (72.64%), Postives = 152/201 (75.62%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYTGQS+RAVPIRVLTVGKKRSRGVQLLVDEYI+KLKNYC VEDVQLRSNPRNAR
Sbjct: 14  SGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNAR 73

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DP+AQVDDED+AVVNLLK DDW                                      
Sbjct: 74  DPKAQVDDEDVAVVNLLKPDDW-------------------------------------- 133

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKE+SSE MA+LVADAG T ASRLSFCIGGPYGHGQQLRQRANLSIK
Sbjct: 134 ------VVMLDENGKELSSELMAELVADAGNTSASRLSFCIGGPYGHGQQLRQRANLSIK 170

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 194 LSSMVLNHQIALLVLMEQLYR 170

[Close]

BLAST of CaUC05G096810 vs. ExPASy Swiss-Prot
Match: Q9LXB4 (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g10620 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-50
Identity = 108/200 (54.00%), Postives = 136/200 (68.00%), Query Frame = 0


Query: 17  GGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNARD 76
           G  C+Y GQ++RA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +RSNPRNA+D
Sbjct: 26  GRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQD 85

Query: 77  PRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPIL 136
            RAQV+DE++A++ L+ SDDW                                       
Sbjct: 86  VRAQVEDEEVAMMKLIGSDDW--------------------------------------- 145

Query: 137 HMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKL 196
                VV+LDE G+++ SEQMA+L+ DAG +GASR+SFCIGG YGHG Q+R+RAN++I+L
Sbjct: 146 -----VVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRL 181

Query: 197 SSMVLNHQIALLVLMEQLYR 217
           SSMVLNHQIAL+VLMEQLYR
Sbjct: 206 SSMVLNHQIALVVLMEQLYR 181

[Close]

BLAST of CaUC05G096810 vs. ExPASy Swiss-Prot
Match: A0PXE8 (Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT) OX=386415 GN=rlmH PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-12
Identity = 51/185 (27.57%), Postives = 88/185 (47.57%), Query Frame = 0


Query: 32  IRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNARDPRAQVDDEDMAVVNL 91
           I ++ VGK + + ++L +DEY ++L  YC +  V+L  N     D  ++ D         
Sbjct: 3   ITIICVGKLKEKYLKLAIDEYSKRLSRYCKLNIVEL--NDEKTPDNASEKD--------- 62

Query: 92  LKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPILHMHRQVVMLDENGKE 151
                    +L +++KE   I+  +                      +  V+ LD NGK 
Sbjct: 63  ---------ELIIKQKEGSKILAHVKE--------------------NMYVIALDLNGKM 122

Query: 152 MSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLM 211
            SSE++A+L+ D G+ G S ++  IGG  G  +++  RAN  +  S M   HQ+  ++L+
Sbjct: 123 ASSEELAELIGDLGLKGKSNIALVIGGSLGLSKEVLNRANYKLSFSKMTFPHQLMRVILL 147

Query: 212 EQLYR 217
           EQ+YR
Sbjct: 183 EQIYR 147

[Close]

BLAST of CaUC05G096810 vs. ExPASy Swiss-Prot
Match: A0M0D0 (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) OX=411154 GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-11
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 142 VVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVL 201
           VV+LDENGK+ SSE  ++ +     TG  RL F IGGPYG  +++ +RA+  I LS M  
Sbjct: 70  VVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRADSKISLSKMTF 129

Query: 202 NHQIALLVLMEQLYR 217
           +HQ+  L   EQLYR
Sbjct: 130 SHQMVRLFFTEQLYR 144

[Close]

BLAST of CaUC05G096810 vs. ExPASy Swiss-Prot
Match: Q2FTV8 (Putative ribosomal RNA large subunit methyltransferase H OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) OX=323259 GN=rlmH PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-11
Identity = 49/187 (26.20%), Postives = 85/187 (45.45%), Query Frame = 0


Query: 30  VPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNARDPRAQVDDEDMAVV 89
           V IR+  +GK +   ++  + +Y +++ ++C VE ++          P A V D   + +
Sbjct: 2   VRIRIRAIGKIKESFIRDAIADYAKRMCSFCQVECIEY---------PEAPVPDTHPSTI 61

Query: 90  NLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPILHMHRQVVMLDENG 149
            +    +   L   +   +Y                                V++LD  G
Sbjct: 62  EMACVSEGEKLCSGIDSLDY--------------------------------VIILDRTG 121

Query: 150 KEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLV 209
           K++SSE +A+++    I G  +L F IGGP+G  +   Q+ N+ + LS+M   HQIA L+
Sbjct: 122 KQVSSEGLAEVIRRCEIEGPYQLVFIIGGPHGLSKDCLQKGNIILSLSAMTFPHQIARLL 147

Query: 210 LMEQLYR 217
           L EQLYR
Sbjct: 182 LYEQLYR 147

[Close]

BLAST of CaUC05G096810 vs. ExPASy Swiss-Prot
Match: A7FZD1 (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain ATCC 19397 / Type A) OX=441770 GN=rlmH PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-10
Identity = 49/188 (26.06%), Postives = 91/188 (48.40%), Query Frame = 0


Query: 32  IRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNARDPRAQVDDEDMAVVNL 91
           I +++VGK + + ++  +DEY ++L  YC +  +++     + + P    D+  +   N+
Sbjct: 3   ISIISVGKIKEKFLKAAIDEYSKRLSKYCKLNIIEV----ADEKTP----DNASLKEENI 62

Query: 92  LKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPILHMHRQVVMLDENGKE 151
           +K  + G+L L+  K                                +  V+ LD  GK 
Sbjct: 63  IKEKE-GNLILKHIKD-------------------------------NSFVIALDLKGKS 122

Query: 152 MSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLM 211
           ++SE+ +DL+ +  +TG S ++F IGG  G  QQ+  RAN  +  S M   HQ+  ++L+
Sbjct: 123 ITSEEFSDLIENCRLTGNSTIAFVIGGSLGLSQQVLSRANYKLSFSKMTFPHQLFRVMLL 150

Query: 212 EQLYRVIQ 220
           EQ+YR  +
Sbjct: 183 EQVYRAFR 150

[Close]

BLAST of CaUC05G096810 vs. ExPASy TrEMBL
Match: A0A6J1E0Z2 (putative RNA methyltransferase At5g10620 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026123 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.5e-69
Identity = 148/201 (73.63%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYT QS+RAVPIRVLTVGKKRSRGVQL+VDEYIEKLK+YC VEDVQLRSNPRNAR
Sbjct: 20  SGGRCKYTAQSVRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNAR 79

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DPRAQVDDEDMAVVNLLKSDDW                                      
Sbjct: 80  DPRAQVDDEDMAVVNLLKSDDW-------------------------------------- 139

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKEMSSE+MA+LVADAG TGASRLSFCIGGPYGHGQQLRQRANL+IK
Sbjct: 140 ------VVMLDENGKEMSSERMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLTIK 176

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 200 LSSMVLNHQIALLVLMEQLYR 176

[Close]

BLAST of CaUC05G096810 vs. ExPASy TrEMBL
Match: A0A6J1BPR4 (putative RNA methyltransferase At5g10620 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026123 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.5e-69
Identity = 148/201 (73.63%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYT QS+RAVPIRVLTVGKKRSRGVQL+VDEYIEKLK+YC VEDVQLRSNPRNAR
Sbjct: 18  SGGRCKYTAQSVRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNAR 77

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DPRAQVDDEDMAVVNLLKSDDW                                      
Sbjct: 78  DPRAQVDDEDMAVVNLLKSDDW-------------------------------------- 137

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKEMSSE+MA+LVADAG TGASRLSFCIGGPYGHGQQLRQRANL+IK
Sbjct: 138 ------VVMLDENGKEMSSERMAELVADAGNTGASRLSFCIGGPYGHGQQLRQRANLTIK 174

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 198 LSSMVLNHQIALLVLMEQLYR 174

[Close]

BLAST of CaUC05G096810 vs. ExPASy TrEMBL
Match: A0A1S3CQZ8 (putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 9.8e-69
Identity = 146/201 (72.64%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYTGQS+RAVPIRVLTVGKKRSRGVQLLVDEYI+KLKNYC VEDVQLRSNPRNAR
Sbjct: 14  SGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNAR 73

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DP+AQ+DDED+AVVNLLKSDDW                                      
Sbjct: 74  DPKAQIDDEDVAVVNLLKSDDW-------------------------------------- 133

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKE+SSEQMA+LVADAG TGASRLSFCIGGPYGHGQ+LR+RANLSIK
Sbjct: 134 ------VVMLDENGKEISSEQMAELVADAGNTGASRLSFCIGGPYGHGQKLRERANLSIK 170

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 194 LSSMVLNHQIALLVLMEQLYR 170

[Close]

BLAST of CaUC05G096810 vs. ExPASy TrEMBL
Match: A0A0A0LGS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.1e-67
Identity = 146/201 (72.64%), Postives = 152/201 (75.62%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           SGGRCKYTGQS+RAVPIRVLTVGKKRSRGVQLLVDEYI+KLKNYC VEDVQLRSNPRNAR
Sbjct: 14  SGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNAR 73

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DP+AQVDDED+AVVNLLK DDW                                      
Sbjct: 74  DPKAQVDDEDVAVVNLLKPDDW-------------------------------------- 133

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKE+SSE MA+LVADAG T ASRLSFCIGGPYGHGQQLRQRANLSIK
Sbjct: 134 ------VVMLDENGKELSSELMAELVADAGNTSASRLSFCIGGPYGHGQQLRQRANLSIK 170

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 194 LSSMVLNHQIALLVLMEQLYR 170

[Close]

BLAST of CaUC05G096810 vs. ExPASy TrEMBL
Match: A0A6J1FPF2 (putative RNA methyltransferase At5g10620 OS=Cucurbita moschata OX=3662 GN=LOC111446064 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.4e-67
Identity = 145/201 (72.14%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 16  SGGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNAR 75
           S GRCKYTGQS+RAVPIRVLTVGKKRSRGVQLL+DEYI+KL NYC VEDVQLRSNPRNAR
Sbjct: 14  SVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQLRSNPRNAR 73

Query: 76  DPRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPI 135
           DPRAQVDDED+AVVNLLKSDDW                                      
Sbjct: 74  DPRAQVDDEDIAVVNLLKSDDW-------------------------------------- 133

Query: 136 LHMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIK 195
                 VVMLDENGKE+SSEQMA+LVADAG TGASRL+FCIGGPYGHGQQLRQRAN+SIK
Sbjct: 134 ------VVMLDENGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRANVSIK 170

Query: 196 LSSMVLNHQIALLVLMEQLYR 217
           LSSMVLNHQIALLVLMEQLYR
Sbjct: 194 LSSMVLNHQIALLVLMEQLYR 170

[Close]

BLAST of CaUC05G096810 vs. TAIR 10
Match: AT5G10620.1 (methyltransferases )

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-51
Identity = 108/200 (54.00%), Postives = 136/200 (68.00%), Query Frame = 0


Query: 17  GGRCKYTGQSLRAVPIRVLTVGKKRSRGVQLLVDEYIEKLKNYCIVEDVQLRSNPRNARD 76
           G  C+Y GQ++RA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +RSNPRNA+D
Sbjct: 26  GRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQD 85

Query: 77  PRAQVDDEDMAVVNLLKSDDWGDLDLQLQKKEYVPIIIELVSLSVECFIVLVLVLTIPIL 136
            RAQV+DE++A++ L+ SDDW                                       
Sbjct: 86  VRAQVEDEEVAMMKLIGSDDW--------------------------------------- 145

Query: 137 HMHRQVVMLDENGKEMSSEQMADLVADAGITGASRLSFCIGGPYGHGQQLRQRANLSIKL 196
                VV+LDE G+++ SEQMA+L+ DAG +GASR+SFCIGG YGHG Q+R+RAN++I+L
Sbjct: 146 -----VVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRL 181

Query: 197 SSMVLNHQIALLVLMEQLYR 217
           SSMVLNHQIAL+VLMEQLYR
Sbjct: 206 SSMVLNHQIALVVLMEQLYR 181

[Close]

BLAST of CaUC05G096810 vs. TAIR 10
Match: AT5G10605.1 (methyltransferases )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-08
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 177 GGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLME 213
           G  YGHG+QLR+RAN++I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

[Close]

BLAST of CaUC05G096810 vs. TAIR 10
Match: AT5G10605.2 (methyltransferases )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-08
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 177 GGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLME 213
           G  YGHG+QLR+RAN++I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

The following BLAST results are available for this feature:

BLAST of CaUC05G096810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896821.1	1.7e-70	73.56	putative RNA methyltransferase At5g10620 isoform X2 [Benincasa hispida]	[more]
XP_022131264.1	1.6e-68	73.63	putative RNA methyltransferase At5g10620 isoform X2 [Momordica charantia]	[more]
XP_022159857.1	1.6e-68	73.63	putative RNA methyltransferase At5g10620 isoform X1 [Momordica charantia]	[more]
XP_008466330.1	2.0e-68	72.64	PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331...	[more]
XP_011652513.1	2.2e-67	72.64	putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus]	[more]

BLAST of CaUC05G096810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXB4	2.6e-50	54.00	Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
A0PXE8	1.6e-12	27.57	Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT)...	[more]
A0M0D0	3.1e-11	48.00	Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0...	[more]
Q2FTV8	9.0e-11	26.20	Putative ribosomal RNA large subunit methyltransferase H OS=Methanospirillum hun...	[more]
A7FZD1	1.2e-10	26.06	Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain...	[more]

BLAST of CaUC05G096810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0Z2	7.5e-69	73.63	putative RNA methyltransferase At5g10620 isoform X1 OS=Momordica charantia OX=36...	[more]
A0A6J1BPR4	7.5e-69	73.63	putative RNA methyltransferase At5g10620 isoform X2 OS=Momordica charantia OX=36...	[more]
A0A1S3CQZ8	9.8e-69	72.64	putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770...	[more]
A0A0A0LGS0	1.1e-67	72.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1	[more]
A0A6J1FPF2	1.4e-67	72.14	putative RNA methyltransferase At5g10620 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CaUC05G096810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10620.1	1.8e-51	54.00	methyltransferases	[more]
AT5G10605.1	5.6e-08	75.00	methyltransferases	[more]
AT5G10605.2	5.6e-08	75.00	methyltransferases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 28..224 e-value: 2.0E-35 score: 123.9
IPR003742	RNA methyltransferase RlmH	PFAM	PF02590	SPOUT_MTase	coord: 138..218 e-value: 4.1E-26 score: 91.8 coord: 32..96 e-value: 2.4E-5 score: 24.4
IPR003742	RNA methyltransferase RlmH	PANTHER	PTHR33603	METHYLTRANSFERASE	coord: 138..218 coord: 14..97
IPR003742	RNA methyltransferase RlmH	CDD	cd18081	RlmH-like	coord: 32..216 e-value: 1.52144E-42 score: 139.884
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 137..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G096810.1	CaUC05G096810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008168	methyltransferase activity