CaUC05G093090 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G093090
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	Ciama_Chr05: 18373518 .. 18374248 (+)
RNA-Seq Expression	CaUC05G093090
Synteny	CaUC05G093090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAAAATATTCCATTGCTTTCACAGAAATGCATGGCCAAAAGCAAATACAAGATAGGCACAGATCTACACATAAACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACGTGTATAGTTATCAATGGAAAAGATCTGAATTCTGATATATGCACTGTTCTAATGTCTATAGCAGGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGCAGCCAAAAACAATACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGTAATATCACTAACTAATTATAGTTGTTAGCCTATGCACAAAAAAACGCAAGCAACTGATTGAAACATTATACCATTGACTAAAAGATTAAAAGTTTGAATTCAAAATATATATACACATATATATCTCACTAACCTACTCGGCTTTGGCATCTTCTCACGATCAGGTAAGAATTTACTACAAATTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGGGAGTGATGGTGGTGGTGACAACAGACATGGTGAAAGAAGGCTAAAGAAAGATTTATGA

mRNA sequence

ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAAAATATTCCATTGCTTTCACAGAAATGCATGGCCAAAAGCAAATACAAGATAGGCACAGATCTACACATAAACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACGTGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGCAGCCAAAAACAATACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGAATTTACTACAAATTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGGGAGTGATGGTGGTGGTGACAACAGACATGGTGAAAGAAGGCTAAAGAAAGATTTATGA

Coding sequence (CDS)

ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAAAATATTCCATTGCTTTCACAGAAATGCATGGCCAAAAGCAAATACAAGATAGGCACAGATCTACACATAAACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACGTGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGCAGCCAAAAACAATACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGAATTTACTACAAATTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGGGAGTGATGGTGGTGGTGACAACAGACATGGTGAAAGAAGGCTAAAGAAAGATTTATGA

Protein sequence

MPALFDIDTHISRKYSIAFTEMHGQKQIQDRHRSTHKHGAFCAREKCSFKSNGRTDKHEDSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQYSPMVRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGERRLKKDL

Homology

[Close]

BLAST of CaUC05G093090 vs. NCBI nr
Match: KAG7022694.1 (hypothetical protein SDJN02_16428, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 4.4e-35
Identity = 80/105 (76.19%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 62  RDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQYS 121
           +DKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSNEASGN AAKNN   PEENYQYS
Sbjct: 2   QDKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQYS 61

Query: 122 PM----VRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGERRLK 163
           PM    + +++       EKMVLL LKL+GSDGGGDNRHGERR+K
Sbjct: 62  PMNFLQILVFWMQKVFSHEKMVLLSLKLIGSDGGGDNRHGERRVK 106

[Close]

BLAST of CaUC05G093090 vs. NCBI nr
Match: KAA0066959.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK30238.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 60  DSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQ 119
           DS+DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTAAK+NTSR EENYQ
Sbjct: 18  DSQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQ 77

Query: 120 YSPM 124
           YSPM
Sbjct: 78  YSPM 81

[Close]

BLAST of CaUC05G093090 vs. NCBI nr
Match: XP_038883812.1 (protein NOI4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-24
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 62  RDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQYS 121
           +DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AKNNTSRPEENYQYS
Sbjct: 29  QDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTGAKNNTSRPEENYQYS 88

Query: 122 PMVRIYYKF 131
           PM + +  F
Sbjct: 89  PMKKWFCCF 97

[Close]

BLAST of CaUC05G093090 vs. NCBI nr
Match: XP_038883820.1 (protein NOI4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-24
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 62  RDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQYS 121
           +DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AKNNTSRPEENYQYS
Sbjct: 11  QDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTGAKNNTSRPEENYQYS 70

Query: 122 PMVRIYYKF 131
           PM + +  F
Sbjct: 71  PMKKWFCCF 79

[Close]

BLAST of CaUC05G093090 vs. NCBI nr
Match: KAG7017799.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-24
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQYSP 122
           D+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTAAKNN SRPEENYQYSP
Sbjct: 4   DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQYSP 63

Query: 123 MV 125
           MV
Sbjct: 64  MV 65

[Close]

BLAST of CaUC05G093090 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGN 105
           DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+
Sbjct: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

[Close]

BLAST of CaUC05G093090 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-05
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 59  EDSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN-EASGNTAAKNNTSRPEEN 118
           ++S +K   +PKFG+WD NNP+SA+G+T IF+K R+E+ S    SG++    + S    N
Sbjct: 139 DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPN 198

[Close]

BLAST of CaUC05G093090 vs. ExPASy TrEMBL
Match: A0A5D3E371 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00620 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 60  DSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQ 119
           DS+DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTAAK+NTSR EENYQ
Sbjct: 18  DSQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQ 77

Query: 120 YSPM 124
           YSPM
Sbjct: 78  YSPM 81

[Close]

BLAST of CaUC05G093090 vs. ExPASy TrEMBL
Match: A0A0A0LDP9 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G595220 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEENYQYSP 122
           DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTAAK+NTSR EENYQYSP
Sbjct: 4   DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQYSP 63

Query: 123 MVRIYYKF 131
           M + +  F
Sbjct: 64  MKKWFCCF 71

[Close]

BLAST of CaUC05G093090 vs. ExPASy TrEMBL
Match: A0A5J5AK52 (AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004861 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-16
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 61  SRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAS--GNTAAKN-NTSRPEEN 120
           S+DKGRPLPKFGEWDVNNPASA+GFTVIF+KARD+KK+N A+  G  + KN NTS+  EN
Sbjct: 3   SQDKGRPLPKFGEWDVNNPASADGFTVIFAKARDDKKTNGAAGPGGPSQKNDNTSKQNEN 62

Query: 121 YQYSPMVRIYY 129
           YQY PM + ++
Sbjct: 63  YQYPPMEKKWF 73

[Close]

BLAST of CaUC05G093090 vs. ExPASy TrEMBL
Match: A0A5J5BYY8 (AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004561 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-16
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 61  SRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA-------SGNTAAKNNTSR 120
           S+DKGRPLPKFGEWDVNNPASA+GFTVIF+KARD+KK+N A        G    KN+ S+
Sbjct: 3   SQDKGRPLPKFGEWDVNNPASADGFTVIFAKARDDKKTNGAGAGAGGGGGGPTQKNDNSK 62

Query: 121 PEENYQYSPMVRIYY 129
             ENYQYSPM + ++
Sbjct: 63  QNENYQYSPMEKKWF 77

[Close]

BLAST of CaUC05G093090 vs. ExPASy TrEMBL
Match: B9SLS6 (NOI, putative OS=Ricinus communis OX=3988 GN=RCOM_0530960 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 61  SRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAA---KNNTSRPEEN 120
           ++DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN A G  AA    NN  +P++N
Sbjct: 3   TQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNAAGGAGAASQRNNNLHKPDDN 62

[Close]

BLAST of CaUC05G093090 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 9.1e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 61  SRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAKNNTSRPEEN 118
           + +KG+PLPKFGEWDVNNPASAEGFTVIFSKA DEKK+ +ASG  A  N+   P+ N
Sbjct: 2   AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASG--AGPNSLVSPQRN 56

[Close]

BLAST of CaUC05G093090 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 60  DSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGN 105
           D RDKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+
Sbjct: 16  DWRDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]

BLAST of CaUC05G093090 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 60  DSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGN 105
           D RDKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+
Sbjct: 16  DWRDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]

BLAST of CaUC05G093090 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGN 105
           DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+
Sbjct: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

[Close]

BLAST of CaUC05G093090 vs. TAIR 10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-13
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 58  HEDSRDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTAAK---NNTSRP 116
           ++  + + RPLPKFGEWDVN+PASAEGFTVIF+KARD+KK+N ASG  A++   NN S+ 
Sbjct: 5   NQQRQQQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTN-ASGRAASQRRDNNKSQD 64

The following BLAST results are available for this feature:

BLAST of CaUC05G093090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022694.1	4.4e-35	76.19	hypothetical protein SDJN02_16428, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0066959.1	2.6e-24	93.75	RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK30238.1 RPM1-inte...	[more]
XP_038883812.1	2.6e-24	86.96	protein NOI4-like isoform X1 [Benincasa hispida]	[more]
XP_038883820.1	2.6e-24	86.96	protein NOI4-like isoform X2 [Benincasa hispida]	[more]
KAG7017799.1	3.5e-24	95.16	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CaUC05G093090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	3.2e-12	80.95	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	4.9e-05	41.67	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of CaUC05G093090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E371	1.3e-24	93.75	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0LDP9	1.9e-23	86.76	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G59...	[more]
A0A5J5AK52	4.9e-16	67.61	AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J5BYY8	4.9e-16	62.67	AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
B9SLS6	1.1e-15	75.81	NOI, putative OS=Ricinus communis OX=3988 GN=RCOM_0530960 PE=4 SV=1	[more]

BLAST of CaUC05G093090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63270.1	9.1e-15	68.42	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.5e-14	80.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	3.5e-14	80.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	2.2e-13	80.95	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	6.5e-13	62.30	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 63..98 e-value: 1.3E-22 score: 78.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..115
None	No IPR available	PANTHER	PTHR33159:SF69	RPM1-INTERACTING PROTEIN 4-LIKE	coord: 61..121
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 61..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G093090.1	CaUC05G093090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane