CaUC05G092340 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G092340
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNase H domain-containing protein
Location	Ciama_Chr05: 15738088 .. 15744262 (-)
RNA-Seq Expression	CaUC05G092340
Synteny	CaUC05G092340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTTTGGGCAACCTCAGTGTTGCGTTTGGATTGGAAGGATCACTATGGGCGGCTTAATTTTTCCGTGCTGAGGTTTTTCTGTAAGTTGCGGGTGGGGTTCACTAATGGATGAAGAGTTTTGAACAAGTATTTAGAGAATCTTAAGCTTTTAGAGGAGAAAGGAAGCATAGCGGAAATCAAAGATGACGACATTGATGTGGCAAATGCAAGATTAAAGACAGCGATTGCGTGTAAACTCCTATCCCCGAAGATTATCCATGCAGAAACTTTCAAAACATTAATGCCTAAAATATGGAATATGGAGGACCAAGTGAAGCTAGAAAATGTTGGACAAAATGTCTTTATCTGCTATTTTAAGAGACAAGAAACGGGTAATGGAGAGTGGACCATGGTTCTTCGACAAAGCTTTAATTCTATTCGAAGACCTCAAAGGAAACATAAGCATCTCTAATTTGGACTTCAGGTAAGCATCTTTTTGGATTCACTTCAACAATCTCCCTTAATCTCCTCATGGCAAGTTTCACAAGGAAAATGGCAGGAGTGCTCGAACATATGGTGGGTGAGTTTGAGAAAGTAGATCTGGAAGAAGAAGAAAGATGTTGGAACAAAACTCTGAGGGTGCATGTCAAGATGGATATTTGTAAACCATTGAGGCGGTTGGTTAAAGTCAGAGTCAGATCAATTGCTGAAGTGAGCAAGATACCACTAACCTATGAATAAACTTTATATTATAATGTATTTACATACAATTAATTCCCTTATTGATTTGAACATTTCAAATTAAACCAAAATGTTTGATTCTTATACCAATCCTTTATGAGCTAGCAAGGGGACTTTATAGACCTATAGTTAGAAGCTCAAATGATATGAGATTAATCAATTAAACTCTTTAATTAAATTAATCAATTTTCATTAACTGTAGATCACTCCACTAAAAACTTACAATTGCACTCTTTGCACTATAGATATATTTATGTATCCACAGAATTTACTAATCAACAGTAAGTTGACCCTTCACAAATTACTCATAATACAGCTGGGTCAAACCGTTTTACCTCTATAATTATATCTAACTCCTTCACTGATCCCTCTAATGAACAAACTGTTTATAGTCCAACTATAAACTAACCCCTCTCGGGCCAGTGAGAGGGTGATGTTTCATTGTTCAAGACCCAGAATCAGTCCTTAACGGAATAATTTATCTACTTACCCTAAACACGGGAAGGAGTGAATTTCATCTTGTGAAGATATGTTTCCAACTCCCTAATCAAACAAATCCCCAAAATGGTAGCATATTGAGTCGGCGATTAGGCCACTCTCACCCATACAGATCAAAAGATTGCCCTCATAAACAGGAGTTTATAACTCACTCAAGATTCAGGTCGAGTTACCTATAGTCATCATATGAAATGTTAATTTCTATAATTAATGACATTACATAGAGAAATTAAACATTTTGCAGTTCAGTCTTTTGTATAGGATACCCCCACTCACATGTCTCCACATGAACAATTATGATCAAATCGTTTGTAACACTTTACAAGCTCTTTGTAACAATTACAAAATGGGTCGTATTCCTAGTGTTACCAGAATAAGGCACCCAACCTTATTCCTATACTACAGACCTTTTTGGTTATTACTTAAACATGATCCATTCTTGTATGTCAACCACATACATGTTTAAGTTTGAATAAAATAACCATGGAATCTTAGTTTATTCGATTGAGTTTAATGCATAAGATAGATAAAATAACTTCTTATTTTATTCAATAAATAAAAGGTATATACAATTTACAAAACTACAAGATCCAAGAGATTTAGGACACACTAGTCTCAACAGTGTGAGGCCAACAAGTTGAAGAAGAAGTAGGTAATAGTGAAAAACCTCATGTGGGCCTAGCTTATGAAAGTATTTCATGCTCTATAAAAGAAAAATAAAGCAAAGAAGAAGTGGGTCTTATTCCATCCGAAAATGGATTAAATATGATAAGTCCATTTTCTGAAAGGGAATTACAAAAAGGCAAAACCACGGTTAGAACCTGGAAAAGAAAGCTTGGTTTGGGGAATTAAAAGGACAGAATAGGTCTGGAATTATCTTTGGTTAGAAGAAAGGTTTAGACTCCAGTGAATTTCTTTTATCTCAAAAAAGGACCTGCGCAGGGGAGGGGATTTTAAATGAGATATCGGTGGAGGTTGTGTGGCAACCTCGTCGGATGCCATGAAAATCCTATGTTGGAATGTTCGGGGAGTGGGCAATTTCTGAACATTCCATCAACTGAAGCAAGTTGTGAAGAGACAAAAGCCACAACTTGTTTTTCTCTCAAAGACTAGAATTAAGTATGACATGGAGGAAAAGTTGAAAAAAGGTTTGAACTTGAATGGTTGCTTTAGTGTCTTCAGTAGTGGCAGAGGGGGTGGCCTTTCCATTCTTTGGAAAGATGATCTCCAGGTCGAGGTATTATCTTCTTCTTATGGGCACATGATGTTCTTATCAACACTTTGAAAGGTCTATATAGATTTACTGGGTTTTATGTAAATCCTATGACAAGCTTAAGGAAGGATTCGTGGAAGCTTCTGGAAAGGCTTGCGGACGTCAGAAATTATCCCTGGTTGGTTGGAGGGGATTTCAATGAGATAACTTCTATTAAGGAGAAAGAAGGTGGGTGTGTTAGAAGTGATTGCCAAATGGATGAATTTCGGAATGTAATTGATTACTGCCGACTGAGAGATTTGTGGTTTGAAGGTGACAAGTTTACTTGGACCAACTAAAATTTTGAAGTCATTCTCATATGGGAGAGGTTTGACCGTTTCTTAGTGAATCATGACTTTATTGCTCTCTTTCCTCTCATTGGAAGTACTCACTTGGATTACTACAGTTTTGATCATTGGCCCATTATTGCGTGGGAGGATGAGGATTGTAGTGAGGATGATAGAATCAGTGGACGTCAGCCAAAAAGATTTGAAGACAGGTCGACAAAGATCGAGGGGAGTAGAGAAATCATTGAAGATGTATGGCGTAAAAGATATTACCCGAATATCAAAAGCTTCAAGCAGAAATTGGGTCAATGTATCAGTTGTCTCAAAAGATGGGATAAAGATAGGTTGTGTGGCTCTCTGAATGGTGCCATTACTAAGAAGGAAAATGAGATTAGGCTCCTTTATCAAGAAGGAAGTTGGAACTGGAGAAGAAAGACTACTAAGGCCGAAAGGGAATTAGAGCTTCTTCTGGAGAAAGAGGAAAGATATTGGAGAGCTCAGGCAAGAAAAGATTGGTTGATGTGGGGTGACCGTAACAAAAAATGGTTTCATCACAAGGCCTCTTTTAGAAGAAGGAATAATCATATTAAAGGAATTATGGATGAATGTGGGAGGTAGGTTGAGAATAACAGAAGCATTGGGGAGATTGCAACAAGCTATTTCATGAATTTGTTTTCCTCTTCTTCCTCGGGGATGGAACAAATCTCCAAGATCACAGATTGTATCCTAAGGAAAGTGACTAATGAACACAACGAAGCACTGACAAAAATTTCAGCAGACATAAGGTGAAGCTTGCCATTAAGAATATGAATCCAACTAAAGCTCTTGGTCCTGATGGTATGCATGCCATTTTCTACCAACAATACTGGGACATAGTGGGTAATGACGTGGTGGACTTATGCCTGAAAGTTCTCAATGATCAAAAGGATCCTGGTGATTTGAATGACACATTTATCTCTCTTATACTGAAATCTAAAAACCCCACGAGGATGTGTGACTTCCGCCCAATAAGTCTTTGCAATGTGGTATATAAGACTATGGCGAAGGTCCTGGAAAATAGATTAAAAATTGTTCTGAAAGATATTGTTCACCCTGCTCAATTTGCGTTTGTTCCAGGTTGTCTTATATCTGATAATGCCTTAATCTTATTTGAGTGCTTTCATGCCATCAACATCAGGAGGAAATGTAATGTGGGCTAGGTGGCTCTTAAAACTGATATCAGTGAAGCATACGATAGGGTGGAATGGAGCTACTTAAGAGAGGTGATGTGGAGACTTGGGTTTGTTGAAAGGTGGATCGACCTCGTGAGGAGTTGTATGGAGTCTTTCAAATTTGCAGTGCTGGTTAATGGAATCCCCATGAATTTCTTCTGTCATTCTAGAGAGCTTAGGCAGGGAGACCCTTTATCTCCCTATTTGTTCCTGCTTTGCGCTGAGGGTCTTTCAACTCATCTCCACTAGGGAAGAATCTCTCTCTAATTATCTCTGGCTTGAAAAGTTCTAAATTCTGTCTTGTTGTCTCTCACTTGTTTTTTGTAGAGGACAACTTGTTTTTCTTTTTAAAGACTCTGAAAGAGACTGTCAATCTTTAAAGATGGTCCAGACTATGAGGATGCATCTAGGCATGCTATTAATAGAAGCAAATCAATGTTTATCATTAGCAACAACGTGTCTCATAGGAAAAGAAAGGCTATTAAGGCTTGGTTAGGTGTGCGGGCAATGAACTCCCTTGGTCTATATCGCGGACTTCCCTCTCAAAACAACAGCCATAGAAGCCACATCTTAAGGGAGGTTAAGGAAAGGGTGTGGAAAGTCGTTCAAAATTGGAAGTGGAAATCTTCTTTGCTGGGGTGAAAGAGGTTTTGCTTAAAGCGTAGGTCCAGGCTATTCCAAGCTACACAATGAGCTATTTCAAGCTTCTGGACGGAATTTGTAAGGAACTTGAATGTTTATGTGCTCGCTTTTAGTGGGGTTCATCAAAGGAAAAAAGGAAAATCCACTAGAAGAGTTGGAAAAGTTTGTGTGTCATGAAAGAGTTGGGTGAGCTTGGTTTCAGGGATTTCCAGTTATTTAATCAAGTAATGCTTGCAAAATATAGCTGGAGAATATTGAAAAACCCTGATTTTCTGCTGGTTAATGTGTTGAAGAGGAAATATTTCGCGAAGGAGAGTTTTCTGTCAGCGAAGTTGGGCCACAATCTATCGTTTACTTGGAGAAGTATTCTCTAAGGGAGAGATCTGTTTGCAAAAGGCTTTAGATGAGGGTGGGTAACGGAAATGACATATCAATCAAAGATGATCCATGGATTCCTAATGAGGGGAACTTCAAACCGTCTTGGATGATCGATTATGTGAAAGACAAAAGGATCTCCTTTTTTATTTATCATGATGGCAGTTGGAATTCTTTTTTAATCAAAGAGTCCTTTCTTCCTCAGGAGGCGGAGGAGATCTTTGACATTCCCTTAGGCTAGAGGAAGCTAAAAGATGAGGTGTTTTGGGCTTTAGACATAAGGGGTTGCTTCTTTGTCAAAAGTTCCTACCACCTTGTATTATCGCTGAGGGAGGCGGCCATCCCGTTGTCTTTAGGAAGGACGACTCTCACTAAATCTTGGATGGATATCTGGAAAGCGGCTGTCATTCCAAAATTAAACATGTGTGCTGGAGAGTTCTTAATGATATTATCCCTACTTCTTCAAATCTTTTGTCAAAAGGAACCTTTTCTAATAGGTTGTGCTGTTTTTGTAGGATTTTCCAAGAGACGACATGCCACATCATATGGTAGTGTAAGTTTGCTAAGATGGCTTAGTTGCTATATCTCTCTTCTTATGTTGGTCTGGTTGCTGTTGGTAAGGGCAGGTGGTCCCCATTGGATTATTGGGAGAATCTCAAGAGGGTGAGTTCTGGACAGGAGTTAGACTGTGGAATGATCACTATATGGAGTCTTTGGAACCTAAGGAATGAGGTTCGATTTAGGAAGGCCTTACCCTTTCTCGATCGTCTTAGAGTGGGGATTGATTCACTCCTCCCCATCAATGGCGTTGTTGCTAAAGGTAGTGTTAATGGTGTTATCTCTAATCCTCCGACCCCTTCTTTTGGGTGTTGGAAGTTGAATGTGAAAGCTTCTTGGTTTGACATCAAAGGGAAAGGAGGCTTTGGTTGGATTGTCCGGGACCACGAGGGTCGTGCTGTTTTTGGTGGTTGCAAATTCATTTACATCCTTGTGGGGCTGAAATCGCTGGTTGAGGAGTGCTCGAGTCCTATTCCACCTTTGGAGGTGGAGTCTGATACTTTGGAGGTTATCAAGCTGCTCAACCGGGATTTGTTTTCCTTTGCTGAGATCGGTGTTATTATTGAGGACATTTTGTATTTTGTAAATTCTGTGAATATTAAATTTTTTTTGTCATTGCCCCCGTGA

mRNA sequence

ATGGGCCTTTGGGCAACCTCAGTGTTGCGTTTGGATTGGAAGGATCACTATGGGCGGCTTAATTTTTCCGTGCTGAGGTTTTTCTGTAAGTTGCGGGTAAGCATCTTTTTGGATTCACTTCAACAATCTCCCTTAATCTCCTCATGGCAAGTTTCACAAGGAAAATGGCAGGAGTGCTCGAACATATGGTGGTTGCTATATCTCTCTTCTTATGTTGGTCTGGTTGCTGTTGGTAAGGGCAGGTGGTCCCCATTGGATTATTGGGAGAATCTCAAGAGGGTGAGTTCTGGACAGGAGTTAGACTGTGGAATGATCACTATATGGAGTCTTTGGAACCTAAGGAATGAGGTTCGATTTAGGAAGGCCTTACCCTTTCTCGATCGTCTTAGAGTGGGGATTGATTCACTCCTCCCCATCAATGGCGTTGTTGCTAAAGGTAGTGTTAATGGTGTTATCTCTAATCCTCCGACCCCTTCTTTTGGGTGTTGGAAGTTGAATGTGAAAGCTTCTTGGTTTGACATCAAAGGGAAAGGAGGCTTTGGTTGGATTGTCCGGGACCACGAGGGTCGTGCTGTTTTTGGTGGTTGCAAATTCATTTACATCCTTGTGGGGCTGAAATCGCTGGTTGAGGAGTGCTCGAGTCCTATTCCACCTTTGGAGGTGGAGTCTGATACTTTGGAGGTTATCAAGCTGCTCAACCGGGATTTGTTTTCCTTTGCTGAGATCGGTGTTATTATTGAGGACATTTTGTATTTTGTAAATTCTGTGAATATTAAATTTTTTTTGTCATTGCCCCCGTGA

Coding sequence (CDS)

ATGGGCCTTTGGGCAACCTCAGTGTTGCGTTTGGATTGGAAGGATCACTATGGGCGGCTTAATTTTTCCGTGCTGAGGTTTTTCTGTAAGTTGCGGGTAAGCATCTTTTTGGATTCACTTCAACAATCTCCCTTAATCTCCTCATGGCAAGTTTCACAAGGAAAATGGCAGGAGTGCTCGAACATATGGTGGTTGCTATATCTCTCTTCTTATGTTGGTCTGGTTGCTGTTGGTAAGGGCAGGTGGTCCCCATTGGATTATTGGGAGAATCTCAAGAGGGTGAGTTCTGGACAGGAGTTAGACTGTGGAATGATCACTATATGGAGTCTTTGGAACCTAAGGAATGAGGTTCGATTTAGGAAGGCCTTACCCTTTCTCGATCGTCTTAGAGTGGGGATTGATTCACTCCTCCCCATCAATGGCGTTGTTGCTAAAGGTAGTGTTAATGGTGTTATCTCTAATCCTCCGACCCCTTCTTTTGGGTGTTGGAAGTTGAATGTGAAAGCTTCTTGGTTTGACATCAAAGGGAAAGGAGGCTTTGGTTGGATTGTCCGGGACCACGAGGGTCGTGCTGTTTTTGGTGGTTGCAAATTCATTTACATCCTTGTGGGGCTGAAATCGCTGGTTGAGGAGTGCTCGAGTCCTATTCCACCTTTGGAGGTGGAGTCTGATACTTTGGAGGTTATCAAGCTGCTCAACCGGGATTTGTTTTCCTTTGCTGAGATCGGTGTTATTATTGAGGACATTTTGTATTTTGTAAATTCTGTGAATATTAAATTTTTTTTGTCATTGCCCCCGTGA

Protein sequence

MGLWATSVLRLDWKDHYGRLNFSVLRFFCKLRVSIFLDSLQQSPLISSWQVSQGKWQECSNIWWLLYLSSYVGLVAVGKGRWSPLDYWENLKRVSSGQELDCGMITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGSVNGVISNPPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFIYILVGLKSLVEECSSPIPPLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFVNSVNIKFFLSLPP

Homology

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BLAST of CaUC05G092340 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-15
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 85  LDYWENLKRVSSGQELDCGMITIWSLWNLRNE-VRFRKALPFLDRLRVGIDSLLPINGVV 144
           +DY++ + R S   +   G++ +WS+W  RN+ V      P   ++R   +S +      
Sbjct: 1   MDYFDWIWRDSDQYKRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTN 60

Query: 145 AKGSVNGVISNPP------TPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCK 204
             G++N    N P       P+   WKLNV A+W D    GG GWIVRD EGR +   C 
Sbjct: 61  LGGNLNMEDKNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAEC- 120

Query: 205 FIYILVGLKSLVEECSSPIP-PLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFVNSV 264
                  LK+L +  +      +E+ESD LEV+ ++N+      E+ +I+EDI   + S+
Sbjct: 121 -------LKALSQSLTLEAGIKIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESL 180

Query: 265 NIKFFLSLP 266
            I+ F  LP
Sbjct: 181 PIEGFKHLP 181

[Close]

BLAST of CaUC05G092340 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-10
Identity = 55/186 (29.57%), Postives = 84/186 (45.16%), Query Frame = 0


Query: 95  SSGQELDCGMITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGS------- 154
           +S ++LD  +I  W +WN RN V FR        +   +   +  +   ++ S       
Sbjct: 5   ASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKT 64

Query: 155 VNGVISNPPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFI-------- 214
           +N  +   P P    W LN  ASW D   +GG GWI+R  +G  V  G +F+        
Sbjct: 65  LNNKLKWEP-PPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKL 124

Query: 215 ----YILVGLKSLVEECSSPIPPLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFVNS 262
                IL GL++L       + PL +E+D+ EV  LLNR      + G ++E+IL   +S
Sbjct: 125 LEASAILEGLRNLTN--LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDS 184

[Close]

BLAST of CaUC05G092340 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-09
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 0


Query: 82  WSPLDYWENLKRVSSGQELDCGMITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPING 141
           W+  D W  L  + S +E+   M+  W +W  RN   FR     +D  ++    +L IN 
Sbjct: 13  WTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGET--IDEQQLDRSIVLFINS 72

Query: 142 VVAKGSV----------NGVI--------------SNPPTPSFGCWKLNVKASWFDIKGK 201
            + KG+           +G +              S PPT    CWKLN  ASW + +  
Sbjct: 73  NIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPT---NCWKLNTDASWSEEREV 132

Query: 202 GGFGWIVRDHEGRAVF-GGCK-----------FIYILVGLKSLVEECSSPIPPLEVESDT 236
           GG GWI+ D  G  V  G CK            + I+ GL+ +  +  SPI    +ESD+
Sbjct: 133 GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPI---YLESDS 192

[Close]

BLAST of CaUC05G092340 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-09
Identity = 53/185 (28.65%), Postives = 82/185 (44.32%), Query Frame = 0


Query: 104 MITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGSVNGVISN--------- 163
           MI  W +W +RN+  F+   P    +++ ID  + IN      ++ G  +N         
Sbjct: 13  MIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYI-INSAGRNTNLKGKSTNKDLHLIRRI 72

Query: 164 ---------PPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFI------ 223
                    PPT +   WKLN  A+W      GG GWI+RD +G  +   C+ I      
Sbjct: 73  EDNTGAQWKPPTSN--SWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 132

Query: 224 ------YILVGLKSLVEECSSPIPPLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFV 259
                  I  GL+++ +E   PI    +ESD+LE I LL+R      EI  ++E+I   +
Sbjct: 133 TYLEVMAICEGLRAIRQEHCRPI---HLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMM 191

[Close]

BLAST of CaUC05G092340 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-08
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 0


Query: 104 MITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGSVNGVISN--------- 163
           MI  W +W +RN+  F+        +++ ID  + IN      ++ G  +N         
Sbjct: 13  MIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYI-INSAGRDTNLKGKSANKDLHLIRRI 72

Query: 164 ---------PPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFI------ 223
                    PPT +   WKLN  A+W      GG GWI+RD +G  +   C+ I      
Sbjct: 73  GDNTGARWKPPTSN--SWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNI 132

Query: 224 ------YILVGLKSLVEECSSPIP-----PLEVESDTLEVIKLLNRDLFSFAEIGVIIED 259
                  I  GL+++ +E   PI      P+ +ESD+LE I LL+R      EI  ++E+
Sbjct: 133 TYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 192

[Close]

BLAST of CaUC05G092340 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 85  LDYWENLKRVSSGQELDCGMITIWSLWNLRNE-VRFRKALPFLDRLRVGIDSLLPINGVV 144
           +DY++ + R S   +   G++ +WS+W  RN+ V      P   ++R   +S +      
Sbjct: 1   MDYFDWIWRDSDQYKRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTN 60

Query: 145 AKGSVNGVISNPP------TPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCK 204
             G++N    N P       P+   WKLNV A+W D    GG GWIVRD EGR +   C 
Sbjct: 61  LGGNLNMEDKNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAEC- 120

Query: 205 FIYILVGLKSLVEECSSPIP-PLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFVNSV 264
                  LK+L +  +      +E+ESD LEV+ ++N+      E+ +I+EDI   + S+
Sbjct: 121 -------LKALSQSLTLEAGIKIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESL 180

Query: 265 NIKFFLSLP 266
            I+ F  LP
Sbjct: 181 PIEGFKHLP 181

[Close]

BLAST of CaUC05G092340 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-10
Identity = 55/186 (29.57%), Postives = 84/186 (45.16%), Query Frame = 0


Query: 95  SSGQELDCGMITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGS------- 154
           +S ++LD  +I  W +WN RN V FR        +   +   +  +   ++ S       
Sbjct: 5   ASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKT 64

Query: 155 VNGVISNPPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFI-------- 214
           +N  +   P P    W LN  ASW D   +GG GWI+R  +G  V  G +F+        
Sbjct: 65  LNNKLKWEP-PPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKL 124

Query: 215 ----YILVGLKSLVEECSSPIPPLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFVNS 262
                IL GL++L       + PL +E+D+ EV  LLNR      + G ++E+IL   +S
Sbjct: 125 LEASAILEGLRNLTN--LGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDS 184

[Close]

BLAST of CaUC05G092340 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.9e-10
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 0


Query: 82  WSPLDYWENLKRVSSGQELDCGMITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPING 141
           W+  D W  L  + S +E+   M+  W +W  RN   FR     +D  ++    +L IN 
Sbjct: 13  WTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGET--IDEQQLDRSIVLFINS 72

Query: 142 VVAKGSV----------NGVI--------------SNPPTPSFGCWKLNVKASWFDIKGK 201
            + KG+           +G +              S PPT    CWKLN  ASW + +  
Sbjct: 73  NIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPT---NCWKLNTDASWSEEREV 132

Query: 202 GGFGWIVRDHEGRAVF-GGCK-----------FIYILVGLKSLVEECSSPIPPLEVESDT 236
           GG GWI+ D  G  V  G CK            + I+ GL+ +  +  SPI    +ESD+
Sbjct: 133 GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPI---YLESDS 192

[Close]

BLAST of CaUC05G092340 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 53/185 (28.65%), Postives = 82/185 (44.32%), Query Frame = 0


Query: 104 MITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGSVNGVISN--------- 163
           MI  W +W +RN+  F+   P    +++ ID  + IN      ++ G  +N         
Sbjct: 13  MIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYI-INSAGRNTNLKGKSTNKDLHLIRRI 72

Query: 164 ---------PPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFI------ 223
                    PPT +   WKLN  A+W      GG GWI+RD +G  +   C+ I      
Sbjct: 73  EDNTGAQWKPPTSN--SWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 132

Query: 224 ------YILVGLKSLVEECSSPIPPLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFV 259
                  I  GL+++ +E   PI    +ESD+LE I LL+R      EI  ++E+I   +
Sbjct: 133 TYLEVMAICEGLRAIRQEHCRPI---HLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMM 191

[Close]

BLAST of CaUC05G092340 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 0


Query: 104 MITIWSLWNLRNEVRFRKALPFLDRLRVGIDSLLPINGVVAKGSVNGVISN--------- 163
           MI  W +W +RN+  F+        +++ ID  + IN      ++ G  +N         
Sbjct: 13  MIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYI-INSAGRDTNLKGKSANKDLHLIRRI 72

Query: 164 ---------PPTPSFGCWKLNVKASWFDIKGKGGFGWIVRDHEGRAVFGGCKFI------ 223
                    PPT +   WKLN  A+W      GG GWI+RD +G  +   C+ I      
Sbjct: 73  GDNTGARWKPPTSN--SWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNI 132

Query: 224 ------YILVGLKSLVEECSSPIP-----PLEVESDTLEVIKLLNRDLFSFAEIGVIIED 259
                  I  GL+++ +E   PI      P+ +ESD+LE I LL+R      EI  ++E+
Sbjct: 133 TYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 192

[Close]

BLAST of CaUC05G092340 vs. TAIR 10
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-07
Identity = 52/171 (30.41%), Postives = 74/171 (43.27%), Query Frame = 0


Query: 107 IWSLWNLRNEVRF-RKALPFLDRLRVGIDSLLPINGVVAKGSVN-------GVISNPPTP 166
           +W LWN RN + F R+ +P+   L++    L   N  V    +N         I N   P
Sbjct: 447 LWRLWNSRNILYFQRRHVPWETTLQLAQMDLQEWNEAVTPSHINSHGTTIRSHIPNWRRP 506

Query: 167 SFGCWKLNVKASWF--DIKGKGGFGWIVRDHEGRAVFGG------------CKFIYILVG 226
           + G  K NV  S+   +I GKG  GWIVRDH GR  F G            C+F  +L+ 
Sbjct: 507 TNGWVKCNVDGSFINGNIPGKG--GWIVRDHNGRYEFAGQAIGNCIDNALECEFQALLMA 566

Query: 227 LKSLVEEC-SSPIPPLEVESDTLEVIKLLNRDLFSFAEIGVIIEDILYFVN 255
           +    + C S     +  E D  E+  L+N     F      I DIL++ +
Sbjct: 567 M----QHCWSKGYRRICFEGDNKEMFDLINGLKMHFGAFN-WIRDILWWAS 610

The following BLAST results are available for this feature:

BLAST of CaUC05G092340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148549.1	2.8e-15	31.75	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
XP_022155262.1	4.6e-10	29.57	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143317.1	1.0e-09	29.47	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_022143535.1	3.0e-09	28.65	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	3.3e-08	27.89	uncharacterized protein LOC111023608 [Momordica charantia]	[more]

BLAST of CaUC05G092340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC05G092340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4B6	1.3e-15	31.75	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DNV9	2.2e-10	29.57	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CQG0	4.9e-10	29.47	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CP26	1.4e-09	28.65	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	1.6e-08	27.89	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of CaUC05G092340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33160.1	8.6e-07	30.41	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family pro...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 165..250 e-value: 2.50919E-11 score: 57.7092

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G092340.1	CaUC05G092340.1	mRNA