CaUC05G091030 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G091030
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr05: 11907512 .. 11907811 (+)
RNA-Seq Expression	CaUC05G091030
Synteny	CaUC05G091030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCCCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

mRNA sequence

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCCCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

Coding sequence (CDS)

ATGCCAATGCATTTCATGGATGGTTGCTTGCAGGTGCATTTGGAGATCTCTGTTGATTTTTTATGGCCCATAGCCTTAAGCATAGCTGGTGTTATTGTTCCCTACAACTGGACTGGCCCCCTTGCTTCCTCTCATAAAATACTTGTTTTGTTAGGAAACCCAAAAATATTACCTGCAATTCAACAATGGGGACCTTCAAACCCCATCATTTATTCTTCCTCCCCATCCCCACAAGGAACTTGTTTGGAAAATGATGAACAGGTTGAGGACGGAGACGGTCTCTCAAGTCTCGATCTCTAA

Protein sequence

MPMHFMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWGPSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL

Homology

[Close]

BLAST of CaUC05G091030 vs. NCBI nr
Match: KGN57490.1 (hypothetical protein Csa_011417 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 9.7e-06
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 0


Query: 5   FMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWG 64
           +M  C   HLEISVDF  P     AGVIVPYNWT P            +PK         
Sbjct: 13  WMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDP------------DPKYYLLFSNGD 72

Query: 65  PSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL 100
              P +  SS       +  DEQ E+GDGLSSLDL
Sbjct: 73  LQTPSLILSS------LIGYDEQGEEGDGLSSLDL 89

[Close]

BLAST of CaUC05G091030 vs. ExPASy TrEMBL
Match: A0A0A0L6A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199030 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.7e-06
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 0


Query: 5   FMDGCLQVHLEISVDFLWPIALSIAGVIVPYNWTGPLASSHKILVLLGNPKILPAIQQWG 64
           +M  C   HLEISVDF  P     AGVIVPYNWT P            +PK         
Sbjct: 13  WMAACKSKHLEISVDFYGPYPQGQAGVIVPYNWTDP------------DPKYYLLFSNGD 72

Query: 65  PSNPIIYSSSPSPQGTCLENDEQVEDGDGLSSLDL 100
              P +  SS       +  DEQ E+GDGLSSLDL
Sbjct: 73  LQTPSLILSS------LIGYDEQGEEGDGLSSLDL 89

The following BLAST results are available for this feature:

BLAST of CaUC05G091030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57490.1	9.7e-06	42.11	hypothetical protein Csa_011417 [Cucumis sativus]	[more]

BLAST of CaUC05G091030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC05G091030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6A7	4.7e-06	42.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199030 PE=4 SV=1	[more]

BLAST of CaUC05G091030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G091030.1	CaUC05G091030.1	mRNA