CaUC05G087690 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G087690
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 8018061 .. 8018814 (-)
RNA-Seq ExpressionCaUC05G087690
SyntenyCaUC05G087690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGGAGGTACTTTATTTTCAACGACCAAATTCATTGACTGCACTAACCTACCACTAAAATTTTCTAATTTGTAATTTCGTTGAAAGTGAGGCCCTCCCCATCAGGTTATTGTGTTAATTAGTTAATATTATACACACAAACACCAAATTAAAGTCCCTCTAATTCCACACATTCCTTTCTGAGCTTTCTACAATCACAAACTAATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGTAAGTCTTTCTTTTTCCATGATATCTTTCTAACAATATTGTTTTATAAATTTACTACAACCTATAACGTCGGAAGTATCAATTTAAACTTTTGAGTTGATAGGTGAGTCGTCCAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAAAGGCCAATTTCCTTTGGCCTTGGTTGGGTTTGGATTAATAATTAAGGATCTCCACAAGTTGTATGAATCTCTTTTCCTTTTAAGGATGTATCTCTTCTAATGGTGTTGTGTGTGATTTTGGTGGAGTTTAACGGTACAACTACAAATACTTTTTTTTTATGTTAAATTCAGTCTTAAATAATAATCAAAGTTGAATTAGTACCCTACTTTTGTTGAGCTTTATGA

mRNA sequence

AGTGGAGGTACTTTATTTTCAACGACCAAATTCATTGACTGCACTAACCTACCACTAAAATTTTCTAATTTGTAATTTCGTTGAAAGTGAGGCCCTCCCCATCAGGTTATTGTGTTAATTAGTTAATATTATACACACAAACACCAAATTAAAGTCCCTCTAATTCCACACATTCCTTTCTGAGCTTTCTACAATCACAAACTAATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGTGAGTCGTCCAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAAAGGCCAATTTCCTTTGGCCTTGGTTGGGTTTGGATTAATAATTAAGGATCTCCACAAGTTGTATGAATCTCTTTTCCTTTTAAGGATGTATCTCTTCTAATGGTGTTGTGTGTGATTTTGGTGGAGTTTAACGGTACAACTACAAATACTTTTTTTTTATGTTAAATTCAGTCTTAAATAATAATCAAAGTTGAATTAGTACCCTACTTTTGTTGAGCTTTATGA

Coding sequence (CDS)

ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGTGAGTCGTCCAATGGTGTGATGGGCAGAAGATTAATTGTTCGACAGTTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

Protein sequence

MASTTLVAWEKVIFFALLLLAFNVSAREFVACTARESSNGVMGRRLIVRQLDIPRKGNYSPPPPRRHPPPYSY
Homology
BLAST of CaUC05G087690 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 6.2e-10
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 1  MAS-TTLVAWEKVIFFALLLLAFNVSARE-----FVACTARESS-NGVMGRRLIVRQLDI 60
          MAS +  V W++V+FFALLLLAFNVSARE      VA T  E +    +GRRLI RQLD 
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT 60

Query: 61 PRKGNYSPPPPRRHPPP 71
             GNYSPPPPRR PPP
Sbjct: 61 SWGGNYSPPPPRRRPPP 77

BLAST of CaUC05G087690 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 1  MAS-TTLVAWEKVIFFALLLLAFNVSARE-----FVACTARESS-NGVMGRRLIVRQLDI 60
          MAS +  V W++V+FFALLLLAFNVSARE      VA T  E +    +GRRLI RQLD 
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT 60

Query: 61 PRKGNYSPPPPRRHPPP 71
             GNYSPPPPRR PPP
Sbjct: 61 SWGGNYSPPPPRRPPPP 77

BLAST of CaUC05G087690 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MAS-TTLVAWEKVIFFALLLLAFNVSAREF-----VACTARESS---NGVM-GRRLIVRQ 60
          MAS T LVAW+KV F   LL+A +VSARE      V  TARE +   NGV+ G RLI RQ
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIGGSRLIARQ 60

Query: 61 LDIPRKGNYSPPPPRRHPPP 71
          LD   +G+YSPPPPR  PPP
Sbjct: 61 LDTAWRGHYSPPPPRSPPPP 80

BLAST of CaUC05G087690 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MAS-TTLVAWEKVIFFALLLLAFNVSAREF-----VACTARESS---NGV-MGRRLIVRQ 60
          MAS T LVAW+KV F   LL+A +VSARE      V  TARE +   NGV +G RLI RQ
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQ 60

Query: 61 LDIPRKGNYSPPPPRRHPPP 71
          LD   +G+YSPPPPR  PPP
Sbjct: 61 LDTAWRGHYSPPPPRSPPPP 80

BLAST of CaUC05G087690 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_011296 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  MASTTL--VAWEKV-IFFALLLLAFNVSAREFVACTARESS-----NGVMGRRLIVRQLD 60
          MA+ T+  VAW+KV IFF LLLLA+N+SARE VA T  E S     N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSPPP 64
             +GNY PPP
Sbjct: 61 TSWRGNYFPPP 71

BLAST of CaUC05G087690 vs. ExPASy TrEMBL
Match: A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-08
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  MASTTL--VAWEKV-IFFALLLLAFNVSAREFVACTARESS-----NGVMGRRLIVRQLD 60
          MA+ T+  VAW+KV IFF LLLLA+N+SARE VA T  E S     N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSPPP 64
             +GNY PPP
Sbjct: 61 TSWRGNYFPPP 71

BLAST of CaUC05G087690 vs. ExPASy TrEMBL
Match: A0A0A0LB11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 12 VIFFALLLLAFNVS-------AREFVACTARESSNGVMGRRLIVRQLDIPRKGNYSPPPP 71
          ++FF+LLLLAFN S       ARE VA      +N  MGR+L  RQLD   KGNYSPPPP
Sbjct: 7  LVFFSLLLLAFNFSTGVLARPAREMVAV----ETNWEMGRKLTARQLDTSWKGNYSPPPP 66

Query: 72 RRHPPPYSY 74
           R PPP  Y
Sbjct: 67 NRPPPPPPY 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7030841.16.2e-1061.04hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600178.11.1e-0961.04hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6576804.17.6e-0857.50hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.17.6e-0857.50hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57260.11.7e-0759.15hypothetical protein Csa_011296 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5K78.2e-0859.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
A0A0A0LB112.6e-0655.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G087690.1CaUC05G087690.1mRNA