CaUC05G087050 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G087050
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionsignal recognition particle 19 kDa protein
LocationCiama_Chr05: 7247068 .. 7251293 (-)
RNA-Seq ExpressionCaUC05G087050
SyntenyCaUC05G087050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTTTTGTTTTGTTGATGCTCGTAACATAAAAATGTCAATAAACACTTAATTTAAAGCTAAAAAATAACTATTAATTTAAACATATATATAAGATATCAATAAATATTTATATTTAAGTTGACACACAAAATTGTCAATAAAAACACATTTGTTAACACAAAAGTACGTAAGTTCCTTCAAAATGTTAAATTTTCGTAATTAGCTAATAGTACTTTCTAGCCGTTCTTTATAGTAATTTAACATTAATAAAATCACTTTTATCATGTAAGAAATCTNAGATGTAGCAGACGAGAACCCCTTCAAGTACCTTGTTAATTAGTAAGGGTTCACTAGGCTTGGGGATATACTCCTCCAAAATTCAAGCATGAAGTTCCAGACACAAGATTGAAAGTTTAATAACTTAAAACCTTAATGGTCCCTAGATCCTAAAACCTAATATTTTGAAAACAAAAAGATAGAAATGTTCGTGTTTTCAATAGCTATGTCTGTCATAGCTCTATTTACAACTCAACAACCATATTCATTTCCATCACTTGTTTTAGTGATAAAATTGTTCAAGAGAATATAATTGAACAAATTTTAAAGATACTATACTGTGAATTTTTTGTATGGATGACCTAAAATTAAAACATTAATGTCGTTTGCCCAAAATTTTTAAAATGATGAAGGATGACCTTTTAGTCTCCTAGGCATTATCATAATACACTAGTTGTATGTTAATTATCCATATTGTCTATGTGTGATGAGCAAGATCGCGAGTTGTGGACTTAAACACGAGTGTGACCTCTAAAGGTTGAGACTGATTATTTGATTTTATGGGGTCTTCTGGTGACTTCTTCTCGATATATTCTAACGATATTCAATATTTTGTGCATTTTGTACATGCCTTACATAGTTGTGGTGCTTTTGAAGGCTTTTAAGTGCCATTCTATGGTGCACACACTTGCTTTCTAGGGCCGAAGAAATTGATGAAGTCGATTTGGGTTGAAAATCATCCCCATAGGTTGAATCTACTCTAATTGCTAACGGTTGTTTTTCCTAGTTTTGTTTGTTTCTCTTTTTTTTTTCCTCCAAAATAAATAAATAAATTCAGTGGCATTTTTGTAAATTCCATCGGAGCTTTGATTTCATTTTTTCTTCTTCTCTTAGGTGGCGTTAGAGAGGAAAAAAAAAAAGAAAAAGAAAAAGAAAAATCCTATTCTGCCTTCGGCCTCGCCCCATTTTCCTTTCCGATTCTCTCGCTCAATTTCGCCCATTGTCGCGGTTTGGCCGGAACAGAAGAATCAGATCTCTGTTTAGCTTCTCGATTTCCCATTCGTAATCAATTGATTCTTGGATTAGTAGGTATGTAACTTGTTTTGTACGATCTTGTGCTTTAGGATGTTTGCATACGCTTTCGGATTGTTATTCTTTTGTTCTACAGAATCTCATAGGCATGTCATATGAGGAATTTATTCCATTTTTGTCATTTTCATGGCAATGATCAGACAACTGAGTTCTTCCCAGCGAGGAATTTGTTAAGTAGTTGAAATCCTGTTCGATTAGGTGCTTTTTAATTGCCAGAATATATTTCTTCTTGCCCTATATTTGATTGAATGTGCATTATGATAGGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGGTTTTCTAGCAATCATTTTTCCTTGATAAAGATCTTACCTTCCTTTTAATTTTTGTTCTCCCTGCTGCCTGTTTGTGTTGAAGTTAGCTGCAGCCTGCATTGAGTTTATGTGAGCCTGTGATAATTGATAGAATGTGTTAATTGGATTGTTTTCTTATATTATTAGGGAAATCAAAATTTCAATTTAAATTCAAGAATCATTTAGGTCGTATATGGTAACAAATTTGTTTTTAGTTCTGCTTTTGAAATTTATGCTTGTTTTCTCCCAATTTATTTACCATGGTTTTCACTTTTATTAAAGAAACATTTTAATTCTTAGTCTAAATCTAAAAACAAAAACTAAGTTTAAAAAGAAATACTATTTTTAGTTTTTGAAACTTGACTTGATTTTTGAAAACGTTGGTAGAAAGTGGACAACGTAGCATACAAATTTAGAGCTGAATATAGAGTTTTGAAGCTTAATTTTCAAAATCCAAAAACCAAATGATTATCAAATCGGGCCCGATGAATTCACAACCAATTGCTATAAAGTTAATGTTCCCATTTGTCCTAAATTTTTGCTTTTGTGACTGAAAATCCACATTCTTTTTTATTTTCAATAGAAGAACAAAGCAAAGTTTTTTGGTTTATATTTACAGCATTCCTGCAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGGACGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTTTGATTGTCTCTTGAAAAAGATTTCTTTTGAATCTTTCTTGTTCCAAATGAGATATATAATTTAAAATCCTTTTTGGAATTTCAAATTATAGGATTTAATATTATTTCTTGAACTTTTTTGGTTCCAAATGGAAGGTAAAGTTTCAAGTAGTTGTCCTGGGAGTATGGCCGGTATGCGCAAGCTCACCTAGACACATACACTTATTATTATTATTATTATTTTGGAAGAAAAAACAGTGTATTATTGCATAGTATTTTGGTCATTGCATCAAGGTTCTTGAATTTTGCCTTGTATAAAATAAATTTAACTGTATGGTGAAGTAGATTTATAAAGATGAAATTGGTCCATAAAGAAACATTGGAGGCTAGACAAAAAGGAGAGGAGCTCCCTGAGGCTGAATCCTTCTACCCACTAATAGACAATAGTGAAAAAGTTGTCCATTCTTCAACAACAAATCCATAATAAACTACAAACCCAAACATATACGTACTTATTAGAAAATTGTTCTTCTAAATAATTTCTTTCAACATTTATCCCATTTATTAAAAAGAGGATTTGTCCTCCAGTTTGATTGAAACATCCTGAGTATTCTGTTTGAATTTCATTTCAAATCCAAAGTAGTAACAACACAGGTCTCTTCGGAATGAAACAAATTCCCAGTTCCCACCTGCCTTGGGCCTTTGATTTTGAGCCCTCCAGACTACCTTTCACAGAACATATTGAGTACTTGTAGTGATGATTTGTGGATGTGGGATTCTGCTAAAACTATATTTTAAACTCTACTGCTTGATTAACCAAAAAAATGTGTCGAATATTTTAAAATCTTATTGGACCCTGAATTGAAAATACCTAACCTTATTAAACACAAAGTTGAAAGCTTGCAGAACTATTTTACACAACACAAGCTTAAAAGTTGAAGGACTAAATTTGTAATTTAACCTAAATGTTCCAAAATTCCCCTCTAAGTTCTTAGTATCAATAAAAATACCCTAATCTTCACAATTTTACATATGAAATATCTGGCTATATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCCTCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGATGCATTATGTAATTGCAAGAACGAGATTGTTATTGACCAGGCAGGCAGTTTCGTTTTCAGGTCTTAGTTCTTAATTCTCGAGACCTTTGAGTATTGGTGTTCTATCTCAGCCCCATCCGAAACGAATACTAACACAGTGGTCTGTTTTTGTGAAGAGTCAGTGATACTTTTTTCTTGATGGTCGATTCAGTGACTGAAAAAAATAGTCACGGAAGGCAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGATATAGTGTGGGTTTGTCTTGAACAATTTTGTAAATTAGTGGATCATGAAGTTTTTTACTGAGATAAAGTTGGTGATAGGACAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAATCCTTTGAGATTGGAGGTGAAATAGCCTATATATGAATACGATTTACAAGTCTGGAGATTGATGAATGTGGATATTGCTCAATAATTTGCTGCCAGAGTCAGA

mRNA sequence

ATGAGTGGCGTTAGAGAGGAAAAAAAAAAAGAAAAAGAAAAAGAAAAATCCTATTCTGCCTTCGGCCTCGCCCCATTTTCCTTTCCGATTCTCTCGCTCAATTTCGCCCATTGTCGCGGTTTGGCCGGAACAGAAGAATCAGATCTCTGTTTAGCTTCTCGATTTCCCATTCGTAATCAATTGATTCTTGGATTAGTAGAATCTCATAGGCATGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGGACGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCCTCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGATGCATTATGTAATTGCAAGAACGAGATTGTTATTGACCAGGCAGGCAGTTTCGTTTTCAGGTCTTAGTTCTTAATTCTCGAGACCTTTGAGTATTGGTGTTCTATCTCAGCCCCATCCGAAACGAATACTAACACAGTGGTCTGTTTTTGTGAAGAGTCAGTGATACTTTTTTCTTGATGGTCGATTCAGTGACTGAAAAAAATAGTCACGGAAGGCAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGATATAGTGTGGGTTTGTCTTGAACAATTTTGTAAATTAGTGGATCATGAAGTTTTTTACTGAGATAAAGTTGGTGATAGGACAAAAGGATGGTGGATGAGAATTAAGTTGAATGATTAAATCCTTTGAGATTGGAGGTGAAATAGCCTATATATGAATACGATTTACAAGTCTGGAGATTGATGAATGTGGATATTGCTCAATAATTTGCTGCCAGAGTCAGA

Coding sequence (CDS)

ATGAGTGGCGTTAGAGAGGAAAAAAAAAAAGAAAAAGAAAAAGAAAAATCCTATTCTGCCTTCGGCCTCGCCCCATTTTCCTTTCCGATTCTCTCGCTCAATTTCGCCCATTGTCGCGGTTTGGCCGGAACAGAAGAATCAGATCTCTGTTTAGCTTCTCGATTTCCCATTCGTAATCAATTGATTCTTGGATTAGTAGAATCTCATAGGCATGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGGACGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCCTCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG

Protein sequence

MSGVREEKKKEKEKEKSYSAFGLAPFSFPILSLNFAHCRGLAGTEESDLCLASRFPIRNQLILGLVESHRHEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
Homology
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BLAST of CaUC05G087050 vs. NCBI nr
Match: KGN54616.2 (hypothetical protein Csa_018066 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 4.4e-72
Identity = 139/158 (87.97%), Postives = 143/158 (90.51%), Query Frame = 0 

Query: 54  RFPIRNQLILGLVESHRHEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKAC 113
           R P+   LI+ +      EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKAC
Sbjct: 61  RHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKAC 120

Query: 114 ENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLM 173
           ENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLM
Sbjct: 121 ENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLM 180

Query: 174 LRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK 212
           LRIAELVPRHPGRTKKQEPASSS+ AGPSKGKGGRKKK
Sbjct: 181 LRIAELVPRHPGRTKKQEPASSSSTAGPSKGKGGRKKK 218

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BLAST of CaUC05G087050 vs. NCBI nr
Match: KAG6582147.1 (Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.9e-68
Identity = 134/140 (95.71%), Postives = 135/140 (96.43%), Query Frame = 0 

Query: 72  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP 131
           E GWNMDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP
Sbjct: 39  ESGWNMDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP 98

Query: 132 FAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE 191
           FAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQE
Sbjct: 99  FAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQE 158

Query: 192 PASSSTAAGPSKGKGGRKKK 212
           PASSST AGPSKGKGGRKKK
Sbjct: 159 PASSST-AGPSKGKGGRKKK 177

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BLAST of CaUC05G087050 vs. NCBI nr
Match: XP_008438988.1 (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_008438989.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-67
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 197 TAAGPSKGKGGRKKK 212
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

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BLAST of CaUC05G087050 vs. NCBI nr
Match: XP_004147628.1 (signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_031737658.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_031737659.1 signal recognition particle 19 kDa protein [Cucumis sativus] >KAE8650411.1 hypothetical protein Csa_009637 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 7.2e-67
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 197 TAAGPSKGKGGRKKK 212
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

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BLAST of CaUC05G087050 vs. NCBI nr
Match: XP_038879562.1 (signal recognition particle 19 kDa protein [Benincasa hispida])

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-66
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 197 TAAGPSKGKGGRKKK 212
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

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BLAST of CaUC05G087050 vs. ExPASy Swiss-Prot
Match: Q943Z6 (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.4e-50
Identity = 102/145 (70.34%), Postives = 115/145 (79.31%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 196
           DKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 197 ----PASSSTAAGPSK-GKGGRKKK 212
                A++ST+   SK GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

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BLAST of CaUC05G087050 vs. ExPASy Swiss-Prot
Match: P49964 (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.9e-49
Identity = 95/129 (73.64%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 83  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 142
           +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 143 DFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGPS 202
           DF Q GRVRVQLKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA+SST AG S
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASST-AGTS 128

Query: 203 KGKGGRKKK 212
           KGKGG+KKK
Sbjct: 129 KGKGGKKKK 136

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BLAST of CaUC05G087050 vs. ExPASy Swiss-Prot
Match: P09132 (Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-23
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 0 

Query: 86  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 145
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 146 RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGP 205
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 206 SKGKGGRKKK 212
              KG  KKK
Sbjct: 134 GSKKGKGKKK 143

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BLAST of CaUC05G087050 vs. ExPASy Swiss-Prot
Match: Q5RBR1 (Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-23
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 0 

Query: 86  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 145
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 146 RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGP 205
           RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 206 SKGKGGRKKK 212
              KG  KKK
Sbjct: 134 GSKKGKGKKK 143

[Close]
BLAST of CaUC05G087050 vs. ExPASy Swiss-Prot
Match: Q9D7A6 (Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 86  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 145
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 146 RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS--STAA 205
           RD   RGRVRVQLK+EDG+L      SRK +ML +AE++P+   RT+K   A        
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 206 GPSKGKGGRKK 211
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of CaUC05G087050 vs. ExPASy TrEMBL
Match: A0A0A0L5F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69
Identity = 137/140 (97.86%), Postives = 137/140 (97.86%), Query Frame = 0 

Query: 72  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP 131
           EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP
Sbjct: 63  EFGRNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLP 122

Query: 132 FAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE 191
           FAIEIDKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQE
Sbjct: 123 FAIEIDKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQE 182

Query: 192 PASSSTAAGPSKGKGGRKKK 212
           PASSST AGPSKGKGGRKKK
Sbjct: 183 PASSST-AGPSKGKGGRKKK 201

[Close]
BLAST of CaUC05G087050 vs. ExPASy TrEMBL
Match: A0A1S3AYC2 (signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483920 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.2e-67
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 197 TAAGPSKGKGGRKKK 212
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

[Close]
BLAST of CaUC05G087050 vs. ExPASy TrEMBL
Match: A0A6J1IY39 (signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111479513 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-65
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 197 TAAGPSKGKGGRKKK 212
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

[Close]
BLAST of CaUC05G087050 vs. ExPASy TrEMBL
Match: A0A6J1GUF8 (signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111457558 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.9e-65
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 197 TAAGPSKGKGGRKKK 212
           T AGPSKGKGGRKKK
Sbjct: 121 T-AGPSKGKGGRKKK 134

[Close]
BLAST of CaUC05G087050 vs. ExPASy TrEMBL
Match: A0A6J1CAM2 (signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC111009488 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.3e-65
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 196
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQ+MLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVPRHPGRTKKQEPASSS 120

Query: 197 TAAGPSK-GKGGRKKK 212
           T AGPSK GKGGRKKK
Sbjct: 121 T-AGPSKSGKGGRKKK 135

[Close]
BLAST of CaUC05G087050 vs. TAIR 10
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative )

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-51
Identity = 102/145 (70.34%), Postives = 115/145 (79.31%), Query Frame = 0 

Query: 77  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 136
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 137 DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 196
           DKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 197 ----PASSSTAAGPSK-GKGGRKKK 212
                A++ST+   SK GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

The following BLAST results are available for this feature:
BLAST of CaUC05G087050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54616.24.4e-7287.97hypothetical protein Csa_018066 [Cucumis sativus][more]
KAG6582147.12.9e-6895.71Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subs... [more]
XP_008438988.12.5e-6798.52PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_0084389... [more]
XP_004147628.17.2e-6798.52signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 sig... [more]
XP_038879562.11.2e-6698.52signal recognition particle 19 kDa protein [Benincasa hispida][more]
BLAST of CaUC05G087050 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q943Z66.4e-5070.34Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
P499641.9e-4973.64Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39... [more]
P091321.3e-2350.00Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1... [more]
Q5RBR11.3e-2350.00Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1... [more]
Q9D7A62.3e-2349.62Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=... [more]
BLAST of CaUC05G087050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5F91.3e-6997.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1[more]
A0A1S3AYC21.2e-6798.52signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034839... [more]
A0A6J1IY391.5e-6597.04signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1GUF81.9e-6596.30signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1CAM23.3e-6596.32signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC... [more]
BLAST of CaUC05G087050 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48160.14.5e-5170.34signal recognition particle 19 kDa protein, putative / SRP19, putative [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036521Signal recognition particle, subunit SRP19-like superfamilyGENE3D3.30.56.30coord: 76..195
e-value: 1.6E-44
score: 153.2
IPR036521Signal recognition particle, subunit SRP19-like superfamilySUPERFAMILY69695SRP19coord: 82..185
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 89..182
e-value: 6.8E-30
score: 103.8
IPR002778Signal recognition particle, SRP19 subunitPANTHERPTHR17453SIGNAL RECOGNITION PARTICLE 19 KD PROTEINcoord: 84..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G087050.1CaUC05G087050.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0004386 helicase activity