CaUC05G084040 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G084040
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	cellulose synthase-like protein G2 isoform X2
Location	Ciama_Chr05: 4475263 .. 4475487 (-)
RNA-Seq Expression	CaUC05G084040
Synteny	CaUC05G084040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGCCTCGTCTTCTTGAATCTCGTCGCCTTCGCAACCGGATTCGGAAGAACCGTAGCGAATCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTTCCCATCACTGAGGCCATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAATCACTTTAGGATCCACAGTGGTTCTCTTTGTGGAGTAA

mRNA sequence

ATGGCGGGCCTCGTCTTCTTGAATCTCGTCGCCTTCGCAACCGGATTCGGAAGAACCGTAGCGAATCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTTCCCATCACTGAGGCCATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAATCACTTTAGGATCCACAGTGGTTCTCTTTGTGGAGTAA

Coding sequence (CDS)

ATGGCGGGCCTCGTCTTCTTGAATCTCGTCGCCTTCGCAACCGGATTCGGAAGAACCGTAGCGAATCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTTCCCATCACTGAGGCCATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAATCACTTTAGGATCCACAGTGGTTCTCTTTGTGGAGTAA

Protein sequence

MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFPFKITLGSTVVLFVE

Homology

[Close]

BLAST of CaUC05G084040 vs. NCBI nr
Match: XP_004134083.1 (cellulose synthase-like protein E1 [Cucumis sativus] >KGN56893.1 hypothetical protein Csa_010573 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           MAGLV LNLVA A G GR VA+LE+WEETFGQLFLCFYILLMSFPI EAMV+RTDKACFP
Sbjct: 661 MAGLVVLNLVALAVGLGRIVASLENWEETFGQLFLCFYILLMSFPIIEAMVLRTDKACFP 720

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 721 FKVTLGSSLVVLL 733

[Close]

BLAST of CaUC05G084040 vs. NCBI nr
Match: XP_038877189.1 (cellulose synthase-like protein E6 [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-24
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           MAGLVFLNLV F+ GFGR V +LEDWEETFGQLFLCFYILLMSFPI EAMV+R DKACFP
Sbjct: 590 MAGLVFLNLVVFSIGFGRIVVSLEDWEETFGQLFLCFYILLMSFPIIEAMVMRNDKACFP 649

Query: 61  FKITLGSTVVLFV 74
           FK TLGS +V+ +
Sbjct: 650 FKHTLGSALVVLL 662

[Close]

BLAST of CaUC05G084040 vs. NCBI nr
Match: KAA0049284.1 (cellulose synthase-like protein G2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 59  MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 118

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 119 FKVTLGSSLVVLL 131

[Close]

BLAST of CaUC05G084040 vs. NCBI nr
Match: TYK17273.1 (cellulose synthase-like protein G2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 538 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 597

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 598 FKVTLGSSLVVLL 610

[Close]

BLAST of CaUC05G084040 vs. NCBI nr
Match: XP_016899080.1 (PREDICTED: cellulose synthase-like protein G2 isoform X2 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 656 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 715

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 716 FKVTLGSSLVVLL 728

[Close]

BLAST of CaUC05G084040 vs. ExPASy Swiss-Prot
Match: Q651X6 (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.2e-04
Identity = 23/67 (34.33%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           +A +  LN V    G  + +A +  W     Q+ LC  I++ + PI EAM +R DK   P
Sbjct: 651 IATVALLNFVCLVAGLSKIMAGV--WNVFLPQVILCGLIVITNIPIYEAMFVRKDKGRIP 710

Query: 61  FKITLGS 68
             +TL S
Sbjct: 711 LPVTLAS 715

[Close]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL
Match: A0A0A0L580 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141890 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           MAGLV LNLVA A G GR VA+LE+WEETFGQLFLCFYILLMSFPI EAMV+RTDKACFP
Sbjct: 661 MAGLVVLNLVALAVGLGRIVASLENWEETFGQLFLCFYILLMSFPIIEAMVLRTDKACFP 720

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 721 FKVTLGSSLVVLL 733

[Close]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL
Match: A0A5D3CZE7 (Cellulose synthase-like protein G2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001260 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 538 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 597

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 598 FKVTLGSSLVVLL 610

[Close]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL
Match: A0A5A7U1V4 (Cellulose synthase-like protein G2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005250 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 59  MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 118

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 119 FKVTLGSSLVVLL 131

[Close]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL
Match: A0A1S4DTQ6 (cellulose synthase-like protein G2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483628 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 656 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 715

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 716 FKVTLGSSLVVLL 728

[Close]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL
Match: A0A1S4DSW7 (cellulose synthase-like protein G2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483628 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRTVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGR V +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 657 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 716

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 717 FKVTLGSSLVVLL 729

The following BLAST results are available for this feature:

BLAST of CaUC05G084040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134083.1	2.6e-24	79.45	cellulose synthase-like protein E1 [Cucumis sativus] >KGN56893.1 hypothetical pr...	[more]
XP_038877189.1	3.5e-24	79.45	cellulose synthase-like protein E6 [Benincasa hispida]	[more]
KAA0049284.1	5.9e-24	78.08	cellulose synthase-like protein G2 isoform X2 [Cucumis melo var. makuwa]	[more]
TYK17273.1	5.9e-24	78.08	cellulose synthase-like protein G2 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016899080.1	5.9e-24	78.08	PREDICTED: cellulose synthase-like protein G2 isoform X2 [Cucumis melo]	[more]

BLAST of CaUC05G084040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q651X6	9.2e-04	34.33	Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L580	1.3e-24	79.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141890 PE=4 SV=1	[more]
A0A5D3CZE7	2.9e-24	78.08	Cellulose synthase-like protein G2 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7U1V4	2.9e-24	78.08	Cellulose synthase-like protein G2 isoform X2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4DTQ6	2.9e-24	78.08	cellulose synthase-like protein G2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A1S4DSW7	2.9e-24	78.08	cellulose synthase-like protein G2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CaUC05G084040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 3..71
None	No IPR available	PANTHER	PTHR13301:SF216	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING]-LIKE	coord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G084040.1	CaUC05G084040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0097502	mannosylation
biological_process	GO:0009833	plant-type primary cell wall biogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity
molecular_function	GO:0051753	mannan synthase activity