CaUC05G080010 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G080010
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	Ciama_Chr05: 971144 .. 972701 (+)
RNA-Seq Expression	CaUC05G080010
Synteny	CaUC05G080010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGGATTTAAACTTAAGGGGAGTTGGTTTATAGAAGATAGTGGGAGAAAGTGATAAAACTTAAGGTTGTGAATGAATGGAAGCAGATAAGAAAGTAAGGCATGCAAGGCCCACAGAGTGTGTGTGTGTGTGTGTGTGTTTTTCCTATGGAAATGAAAGGCAAGAAGCCAAAAGTTTATCTCCAAAGCCATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCGTCACCGCCTCCCTTTCCGTCCACCGCCGCCATATCGCAACGGCCCTTGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGGTATGCACTTTTGTTACTATTTCATTTTACTACTGTTTCATATTCTACAGTTTTATACCATATAGAAAATGGTGAACTTATATTACACTTTCAGTTCTTAACAAGTCAAGTTTTTGATATTCTAAACATATGTAACCGATTCTATTTATTTGTGTTTTGATTATTAATCAGGGGAAATTGTTTGAATCTAATCTCAAATTTTGATTCTTTTTTCTTTGGTTAAAATATCATTTTGGTCTAAATAATTTAAAGATTGTTCAATTTTCTAATCTAAATAATTTCAAGAAAATTTAAATATAGTTTCTTTATTTATAAGCATCTTTACTTGAAAATTTGGAAACATATTCACATGTTATATTTTCTTACATGATAATTATTATTATTATTTAACTAATTTCTATAAAAATTAAGGGTAGTTGTTTGGCAGTTTTTCCTAAATAAAGAATGTGGGTGGAGATCATATGGGGTTCACGAAGTTAGAAAATGGTCAATTAAGATGCACAAATTTCTGTATTAATATGGGAATAACATAATAGACAAAATAGATAAACAACATTCAAATGTAAATAAGTGTTTCTAACTTGAGGTGTAGGTAGGCAAAGTATATATTCTCATAAATTTAGTCCATATTCTAATGGATTAGTTTGATATTTCTGATTGTCATTCAACTTTGAATTGATGTTTCAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAACTGCAAATAATTTCTTACAATCTTCCTTCATCACAGACATCAAAAGGAAGACTTGATCTTACCAGATTTGAATGTGTTGTTTTGAGATTTTATAGTTTTTTATTATATAAATACATGTGTAAAAA

mRNA sequence

GTTTGGGATTTAAACTTAAGGGGAGTTGGTTTATAGAAGATAGTGGGAGAAAGTGATAAAACTTAAGGTTGTGAATGAATGGAAGCAGATAAGAAAGTAAGGCATGCAAGGCCCACAGAGTGTGTGTGTGTGTGTGTGTGTTTTTCCTATGGAAATGAAAGGCAAGAAGCCAAAAGTTTATCTCCAAAGCCATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCGTCACCGCCTCCCTTTCCGTCCACCGCCGCCATATCGCAACGGCCCTTGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAACTGCAAATAATTTCTTACAATCTTCCTTCATCACAGACATCAAAAGGAAGACTTGATCTTACCAGATTTGAATGTGTTGTTTTGAGATTTTATAGTTTTTTATTATATAAATACATGTGTAAAAA

Coding sequence (CDS)

ATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCGTCACCGCCTCCCTTTCCGTCCACCGCCGCCATATCGCAACGGCCCTTGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAA

Protein sequence

MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

[Close]

BLAST of CaUC05G080010 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 7.4e-84
Identity = 167/187 (89.30%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRH---HHFPVVTASLSVHRRHIATALAALVGLQATAPPL 60
           M +FAN  TLF S IS PHKC H   HHFP++TASLS+HRRHIATALAA++GLQATA PL
Sbjct: 1   MTSFANANTLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATA-PL 60

Query: 61  ALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKS 120
           ALAQSWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLETMSWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAMSVLPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 185
           DLVALLA
Sbjct: 181 DLVALLA 186

[Close]

BLAST of CaUC05G080010 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 9.0e-82
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+++ASLS+HRRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of CaUC05G080010 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 7.7e-81
Identity = 157/184 (85.33%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+++ASLS+ RRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYF+PGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQND+V TANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of CaUC05G080010 vs. NCBI nr
Match: KAG6598987.1 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011082.1 Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.5 bits (794), Expect = 1.0e-80
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+++ASLS+ RRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSISRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of CaUC05G080010 vs. NCBI nr
Match: XP_023545788.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80
Identity = 157/184 (85.33%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+++ASLS+ RRHIATALA + GLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of CaUC05G080010 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.6e-49
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYY 156
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 157 VRTPKVYESYLYYEKTLKSIDDLVALLA 185
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CaUC05G080010 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-09
Identity = 34/122 (27.87%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 65  TRSF---IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 124
           TR F   +KER++   L   EAVAR++ +A+ + +++ +++  +W YV   +RL+++YL 
Sbjct: 91  TRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLR 150

Query: 125 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184
            DLKT ++  P+  +        +L   + +LD+  +     E+  Y+  T  ++ D++A
Sbjct: 151 YDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLA 210

[Close]

BLAST of CaUC05G080010 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           S  P+  +    +   +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CaUC05G080010 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-08
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +KER++   L   EA AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           +  P+  +        +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of CaUC05G080010 vs. ExPASy Swiss-Prot
Match: P12301 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBQ PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08
Identity = 30/120 (25.00%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 64  GTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQD 123
           GT  + K+R++   L   EA  R + +A  + ++++ ++  +W  +   +RL+++YL  D
Sbjct: 112 GTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYD 171

Query: 124 LKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 183
           LKT +S  P+  +       ++L  ++  LD+  +     E+  YY +T+ +I++++A L
Sbjct: 172 LKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

[Close]

BLAST of CaUC05G080010 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+++ASLS+HRRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of CaUC05G080010 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.7e-81
Identity = 157/184 (85.33%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVVTASLSVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+++ASLS+ RRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYF+PGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQND+V TANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of CaUC05G080010 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 158/183 (86.34%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 3   AFANVTTLFSSCISAPHKCRHH-HFPVVTASLSVHRRHIATALAALVGLQATAPPLALAQ 62
           A AN  TLFSS IS PHK RH  HFPV+TASL +HRRHIAT LA +VGLQA  P +ALAQ
Sbjct: 5   ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLVALAQ 64

Query: 63  SWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 122
           SWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLS
Sbjct: 65  SWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLS 124

Query: 123 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 182
           QDLKTAM+ LPQAR+NDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA
Sbjct: 125 QDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184

Query: 183 LLA 185
           LLA
Sbjct: 185 LLA 187

[Close]

BLAST of CaUC05G080010 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 154/178 (86.52%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 8   TTLFSSCISAPHKCRH-HHFPVVTASLSVHRRHIATALAALVGLQATAPPLALAQSWGTR 67
           +TLFSS IS PHK  H  HFP++TASL +HRRHIAT LA ++GLQA A PLALAQSWGT 
Sbjct: 10  STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQA-ATPLALAQSWGTH 69

Query: 68  SFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKT 127
           SFIKERYFEPGLSA+EAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLSQDLKT
Sbjct: 70  SFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKT 129

Query: 128 AMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 185
           AM+ LPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA
Sbjct: 130 AMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 186

[Close]

BLAST of CaUC05G080010 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 154/178 (86.52%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 8   TTLFSSCISAPHKCRH-HHFPVVTASLSVHRRHIATALAALVGLQATAPPLALAQSWGTR 67
           +TLFSS IS PHK  H  HFP++TASL +HRRHIAT LA ++GLQA A PLALAQSWGT 
Sbjct: 10  STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQA-ATPLALAQSWGTH 69

Query: 68  SFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKT 127
           SFIKERYFEPGLSA+EAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLSQDLKT
Sbjct: 70  SFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKT 129

Query: 128 AMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 185
           AM+ LPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA
Sbjct: 130 AMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 186

[Close]

BLAST of CaUC05G080010 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-50
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYY 156
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 157 VRTPKVYESYLYYEKTLKSIDDLVALLA 185
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CaUC05G080010 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-34
Identity = 70/117 (59.83%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAEL 154
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+E+
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159

[Close]

BLAST of CaUC05G080010 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           S  P+  +    +   +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CaUC05G080010 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 38/153 (24.84%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 40  IATALAALVGLQATAPPLALAQSWGT------RSF---IKERYFEPGLSAEEAVARIRQT 99
           +   LA  + ++   PP       GT      R F   +K+R++   L   EA AR +++
Sbjct: 70  VQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKES 129

Query: 100 AEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNM 159
           A+ + +++ +++  +W YV   +R K++YL  DL T +S  P+  +    +   +L D +
Sbjct: 130 AKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTI 189

Query: 160 AELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
             LDY  +     ++  YY +T+ ++++++A L
Sbjct: 190 DNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of CaUC05G080010 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 30/121 (24.79%), Postives = 61/121 (50.41%), Query Frame = 0


Query: 64  GTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQD 123
           GTR+FIK+  +   +  +  + R+++ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 124 LKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 183
               +S      +    + AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 184 A 185
           A
Sbjct: 220 A 220

The following BLAST results are available for this feature:

BLAST of CaUC05G080010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880767.1	7.4e-84	89.30	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_022946003.1	9.0e-82	86.41	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_022972860.1	7.7e-81	85.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]
KAG6598987.1	1.0e-80	85.87	Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurb...	[more]
XP_023545788.1	2.2e-80	85.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo ...	[more]

BLAST of CaUC05G080010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	3.6e-49	65.54	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	3.6e-09	27.87	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q9XFT3	1.1e-08	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41048	2.4e-08	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
P12301	9.0e-08	25.00	Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]

BLAST of CaUC05G080010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2K7	4.4e-82	86.41	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	3.7e-81	85.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L3W3	1.3e-78	86.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A5D3DC39	1.6e-76	86.52	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	1.6e-76	86.52	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]

BLAST of CaUC05G080010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	2.6e-50	65.54	PsbQ-like 2	[more]
AT1G14150.2	2.0e-34	59.83	PsbQ-like 2	[more]
AT4G21280.2	7.5e-10	26.09	photosystem II subunit QA	[more]
AT4G21280.1	1.3e-09	24.84	photosystem II subunit QA	[more]
AT3G01440.1	1.0e-06	24.79	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 45..183 e-value: 2.3E-39 score: 136.8
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 73..184
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 28..184 e-value: 2.1E-35 score: 122.3
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..184
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G080010.1	CaUC05G080010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity