CaUC04G078400 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G078400
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Glycine-rich RNA-binding protein 4
Location	Ciama_Chr04: 27734341 .. 27737550 (-)
RNA-Seq Expression	CaUC04G078400
Synteny	CaUC04G078400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAGAGGTATGGACTCAGAAAAATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGATTGCCATTCGCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGAATTCAAAGCATTCAATCACAATTGGCTTACAGTTCTACGCCACTCTCCTTTTTCTCTGTGAGGAAGACTCGCTCAATCTCAGATTCACCGCTCTTTTCAGTGGCATGTAACTCTTCTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGTTGATTTTCTTTCTCCCAATTGTTTATTTAGGCGTAGTTTTGCTAGAGACAATTTGGATTTGTTGAATGATTTCAACTTCACGCCTGCAGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGATTAGTACTCTTGTGTATTCTGAATGTTCCATTTTGTCTCTATAGTTGATATCCGGCGCTAACTGTTATCAATTGTTATGAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCATTCCTCCGTTATGCTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGGTAATTTAAATGCACAATGGATACTCTGTCTAATTTCTTCCAAATGAGTGTAGTTTTCATAATGCATATTGTTTTCTTCTGTGTTGTATTTATTATCTATTATCCTCTTAATCGCCAAAATTCGACTTAAAATGCTCTTTTCTTATCCACTGTAGTTTGCATTGCATATGGCTCGCTGTCTAGAAGTATATCTCATTTAGTCATCATCTCTAGCCAAAGACGGTAGATGCATCCATAAGAACTGTAAATAACTATAATCTAGAAATTGCGAAGTTTGATTCCATTACCTGCCATCTTGAGCAAGCCTTTCAGTATCTATGATATAAAATCATAGAAATTAAAACCCTCCAGTTTAGGCATTTCACAAAGCAGCAAGAAACCTTGAAATTCTCTATAAATTTAGATAGAAAATTGATATCTAGGTAGGAGAAGTTGGATGTAATAGTTTTAAGGTAACATTAAGAGGATATAAGGTAGCGTTCATCCAGTTATTCTTAATCTTGCTCCTTTCCCAGCTGTGGAAAATTATAACTGTTATACCTTCAAACGAAAAAAATGAACTGCTTCAGTGGATAGTTAATAGTTGAATGCTGATCTAATCATTTGTTATTACAACTTTGTTTTATGACATCGAACGTGTATATATCAGCAGGTAGATTACTTGTCATCGTTAGATTAACACTGTTAGGAGGAACAGAGCCAATTAACTAAACCTGCCCTAGCCATCGACTTTCTGTTTTACTACATTCAAAACCTTGGATGGAACTCACTAACATTTGTACATGATCTTATAATATTGAAGAGGCATTGTCTCTTCCCCTGTCTCCTCAGCCAAGTGAAACTTACCAGCAGACAGTAACTAATTCACTCCCTATTTCTCTCCTCCTCAAAGCTTTCCTATTTATAATCACTTACCTAAGAAACTAACTAGTTCCCATTAAATATAAAGCAACAATAACTAATATAGAAGATTCTTGAAGTATCTGCAAAATGACATAAAAGTGTAAGCAAGCTTTTTTTAGAATCATGTCGAAATATGGAAATTATAAATAAATACCACAAAAGTAAGGATCTAAAATTGTCCTGGATTTTCTTTAGGTTTAAGAAATTCTTGAATTCCTTTAGATAAGAATGAACCAAGAAATAACTAAAATATTTAGGCTCCAAGGATCTCATGTCTATAAATAGGAGGTGTGACACCATAGGTAAGCCAAAAAAAGTAGGAGAGTTAAAGAGAAACTTAGAATGAAAAGTGAGTGAATGTGTCTTGAAAAAGTGAAAAAGTATTCTTTGGAAAGTATCAATCTTTGTACATTCTCAGTAAAAGATTCTTTCTTTCAAGAGATTATCTCTCTTCCTTTTGGGCCAATTTCTTCCCTAGTTTCAACTAACTTTGGCTAAGGGCAAAAGTGTTTAAAACGAAAGCACGGGTTTTTTTTTTTTAAATCTTCAAAAAGATTTTTATTATTTAACTAAATACTACGAGAATTTTTAAAAATACTTTTAAGTAATTTTTCACCCTTCTAAAAGTGAGTCCAACTTACTACCACTGATGGTCATTCTCGTCTTTGTCCTTGAACTTGATATTATAAATAAACCATGTGGGAGGCTTATGAGGCCTATAAAACACTGCTTAAACCAAAATATCAAATGTTTCTTGATTTTTCAGCATGTCCTACATAATTAATTGCAATAAAATTCAGCATAATTTAATATGGACTTGGAAGAGAAATGATTAGAGACATATCATGGTTAGACCCTAATTGCTGGCTTGACTTGTCATAAAACGATAACTGTTTAATGAACTTGTTATATGAAAGGATTTATTTTTAATTAAACTCAGACAACACTAGATTCAATAAATTCACGTTTTTAGCGAAAATATTTCCGAGTTCCAATAACTGGCCAAATTGCTGTTAAGTATGTGGCACTTTTTGGCCTCGAGGCTTCCTCCAATTTGTAGTGACAACTATTTTTGTCGAAGTTAACAGTCAGAGAACTTATTCCCTGGTTTATTTGATGGATATACCCTCCCCACCTCTTCCCATTGGGAAGCATGAATTGATATGATATTCTCTTCTAGGGTTCCATGGATAAAATTCCGATGCCACCTCAAGGAAAAAAAAGGCTACTTTTGAAATCAAGGTTATAGCTGGGAGGGTCTGATCTATGCTAACTGATTATGGTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTAATAATAATTTTATTATCTGTATATACACACATACATATATATTTTTAATAAAATAAAAAAAGAATCTTTGATGATCTTGTTGTCTTAAATTTATTGGTGCATGCTATTTTCAATCATAGTAGCACCCATCATGGGCTAATAGGGGAACTTTGGTTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAATCCAGGTCGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAA

mRNA sequence

TTTTAGAGGTATGGACTCAGAAAAATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGATTGCCATTCGCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGAATTCAAAGCATTCAATCACAATTGGCTTACAGTTCTACGCCACTCTCCTTTTTCTCTGTGAGGAAGACTCGCTCAATCTCAGATTCACCGCTCTTTTCAGTGGCATGTAACTCTTCTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCATTCCTCCGTTATGCTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGGAGGAACAGAGCCAATTAACTAAACCTGCCCTAGCCATCGACTTTCTGTTTTACTACATTCAAAACCTTGGATGGAACTCACTAACATTTGTACATGATCTTATAATATTGAAGAGGCATTGTCTCTTCCCCTGTCTCCTCAGCCAAGTGAAACTTACCAGCAGACAGGTGATTTTTGTGGAAGTTGCAAAATCCAGGTCGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Coding sequence (CDS)

ATGGACTCAGAAAAATGGGGTACGGTCCCCAATATTCCGGATTGCGAATTCCTCAAATTGTTGCAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGATTGCCATTCGCAATCACAGCTGCTCCAAATCCGCTCTTTCAGTTTCAGACTACTCATCATTACAATATCCGTTCAACCGAGACGCATATGCGAATTCAAAGCATTCAATCACAATTGGCTTACAGTTCTACGCCACTCTCCTTTTTCTCTGTGAGGAAGACTCGCTCAATCTCAGATTCACCGCTCTTTTCAGTGGCATGTAACTCTTCTTCACCTCCGCCTTCTCCCAGAAGATACACGCCTTCAACCAGGCTTTACGTCAGTGGACTTTCATTTCGGACCACTGAAGAGAGCTTGCGAAATGCTTTTAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTCGCATTCCTCCGTTATGCTACTGAAGAGGAATCTCGAAAAGCTATCGAGGGAATGCACGGCAAGGAGGAACAGAGCCAATTAACTAAACCTGCCCTAGCCATCGACTTTCTGTTTTACTACATTCAAAACCTTGGATGGAACTCACTAACATTTGTACATGATCTTATAATATTGAAGAGGCATTGTCTCTTCCCCTGTCTCCTCAGCCAAGTGAAACTTACCAGCAGACAGGTGATTTTTGTGGAAGTTGCAAAATCCAGGTCGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Protein sequence

MDSEKWGTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLTKPALAIDFLFYYIQNLGWNSLTFVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEVAKSRSELRQGLKENSS

Homology

[Close]

BLAST of CaUC04G078400 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 7.1e-72
Identity = 164/256 (64.06%), Postives = 177/256 (69.14%), Query Frame = 0


Query: 7   GTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFAITAAPNPLFQFQTTHHYNIRSTETH 66
           GT+ N+PD EFLKL  RLS E PEKTKMTAGL F  +AAP P FQ Q+  + +IRST T 
Sbjct: 2   GTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTR 61

Query: 67  MRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSG 126
           MRIQSIQS+LAYS+TP  FFSV+KTRSISDSPLFSV C SSSP PSPRRY+PSTRLYVSG
Sbjct: 62  MRIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSG 121

Query: 127 LSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKEE 186
           LSFRTTEESLRNAF SFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHG   
Sbjct: 122 LSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHG--- 181

Query: 187 QSQLTKPALAIDFLFYYIQNLGWNSLTFVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEV 246
                                                           K    +VIFVEV
Sbjct: 182 ------------------------------------------------KFLDGRVIFVEV 204

Query: 247 AKSRSELRQGLKENSS 263
           AKS+ ELRQGLKENSS
Sbjct: 242 AKSKWELRQGLKENSS 204

[Close]

BLAST of CaUC04G078400 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.2 bits (718), Expect = 9.2e-72
Identity = 164/256 (64.06%), Postives = 177/256 (69.14%), Query Frame = 0


Query: 7   GTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFAITAAPNPLFQFQTTHHYNIRSTETH 66
           GT+ N+PD EFLKL  RLS E PEKTKMTAGL F  +AAP P FQ Q+  + +IRST T 
Sbjct: 2   GTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTR 61

Query: 67  MRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSG 126
           MRIQSIQS+LAYS+TPL FFSV+KTRSISDSPL SV C SSSP PSPRRY+PSTRLYVSG
Sbjct: 62  MRIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSG 121

Query: 127 LSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKEE 186
           LSFRTTEESLRNAF SFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHG   
Sbjct: 122 LSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHG--- 181

Query: 187 QSQLTKPALAIDFLFYYIQNLGWNSLTFVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEV 246
                                                           K    +VIFVEV
Sbjct: 182 ------------------------------------------------KFLDGRVIFVEV 204

Query: 247 AKSRSELRQGLKENSS 263
           AKS+ ELRQGLKENSS
Sbjct: 242 AKSKWELRQGLKENSS 204

[Close]

BLAST of CaUC04G078400 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-70
Identity = 157/229 (68.56%), Postives = 162/229 (70.74%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQLAYSSTPL FFSVRKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 94  ISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           ISDSPLFS+AC SSSP PSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLTKPALAIDFLFYYIQNLGWNSLT 213
           DKVANRPRGFAFLRYATEEES+KAIEGMHG                              
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHG------------------------------ 178

Query: 214 FVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEVAKSRSELRQGLKENSS 263
                                K    +VIFVEVAKSRSELRQGLKENSS
Sbjct: 181 ---------------------KFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of CaUC04G078400 vs. NCBI nr
Match: XP_038895073.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-67
Identity = 138/164 (84.15%), Postives = 143/164 (87.20%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQLAYSSTPL FFSVRKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 94  ISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           ISDSPLFS+AC SSSP PSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLTKPALAI 198
           DKVANRPRGFAFLRYATEEES+KAIEGMHGK     +  P L I
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKVYLMDILSPPLLI 164

[Close]

BLAST of CaUC04G078400 vs. NCBI nr
Match: XP_038895074.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 5.2e-67
Identity = 136/157 (86.62%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGLPF + AAP P FQFQ THH NIRSTETH RI SI+SQLAYSSTPL FFSVRKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 94  ISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           ISDSPLFS+AC SSSP PSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQL 191
           DKVANRPRGFAFLRYATEEES+KAIEGMHGK   ++L
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKSIMAEL 157

[Close]

BLAST of CaUC04G078400 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-24
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 87  SVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL 146
           S R+ R I    + S     SS  P      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 147 VEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK 185
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of CaUC04G078400 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 105 NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFA 164
           +S SPP        + +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+A
Sbjct: 273 DSESPP------VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 332

Query: 165 FLRYATEEESRKAIEGMHGK 185
           FL Y TEE +  A++ M+GK
Sbjct: 333 FLEYTTEEAAGTALKEMNGK 346

[Close]

BLAST of CaUC04G078400 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 106 SSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAF 165
           + S  P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 166 LRYATEEESRKAIEGMHGK 185
           +RYAT E+S K I GM GK
Sbjct: 102 VRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of CaUC04G078400 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-13
Identity = 33/64 (51.56%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 121 RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEG 180
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 181 MHGK 185
           M+G+
Sbjct: 356 MNGQ 359

[Close]

BLAST of CaUC04G078400 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-12
Identity = 32/64 (50.00%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 121 RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEG 180
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y TEE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 181 MHGK 185
           M+G+
Sbjct: 360 MNGQ 363

[Close]

BLAST of CaUC04G078400 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 3.4e-72
Identity = 164/256 (64.06%), Postives = 177/256 (69.14%), Query Frame = 0


Query: 7   GTVPNIPDCEFLKLLQRLSGETPEKTKMTAGLPFAITAAPNPLFQFQTTHHYNIRSTETH 66
           GT+ N+PD EFLKL  RLS E PEKTKMTAGL F  +AAP P FQ Q+  + +IRST T 
Sbjct: 2   GTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTR 61

Query: 67  MRIQSIQSQLAYSSTPLSFFSVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSG 126
           MRIQSIQS+LAYS+TP  FFSV+KTRSISDSPLFSV C SSSP PSPRRY+PSTRLYVSG
Sbjct: 62  MRIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSG 121

Query: 127 LSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGKEE 186
           LSFRTTEESLRNAF SFGQLVEVNLVMDKVANRPRGFAFLRYATEEES+KAIEGMHG   
Sbjct: 122 LSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHG--- 181

Query: 187 QSQLTKPALAIDFLFYYIQNLGWNSLTFVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEV 246
                                                           K    +VIFVEV
Sbjct: 182 ------------------------------------------------KFLDGRVIFVEV 204

Query: 247 AKSRSELRQGLKENSS 263
           AKS+ ELRQGLKENSS
Sbjct: 242 AKSKWELRQGLKENSS 204

[Close]

BLAST of CaUC04G078400 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 149/229 (65.07%), Postives = 159/229 (69.43%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           IS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSS--PSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLTKPALAIDFLFYYIQNLGWNSLT 213
           D+VANRPRGFAFLRYA+EEES+KAIEGMHG                              
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHG------------------------------ 176

Query: 214 FVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEVAKSRSELRQGLKENSS 263
                                K    +VIFVE+AK RSELRQGLKENSS
Sbjct: 181 ---------------------KFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of CaUC04G078400 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 7.7e-64
Identity = 148/231 (64.07%), Postives = 160/231 (69.26%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P FQ QTTHH +I STET MRI+SIQS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSSSP--PPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 153
           ISDS LFSVAC SSSP    SPRRYTPSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 154 VMDKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLTKPALAIDFLFYYIQNLGWNS 213
           VMD++ANRPRGFAFLRYA+EEES+KAIEGMHG                            
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHG---------------------------- 180

Query: 214 LTFVHDLIILKRHCLFPCLLSQVKLTSRQVIFVEVAKSRSELRQGLKENSS 263
                                  K    +VIFVEVAKSRSELRQGL+ENSS
Sbjct: 181 -----------------------KFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CaUC04G078400 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 132/158 (83.54%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P FQ QTTHH NIRSTETHMR QS QS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           IS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSS--PSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLT 192
           D+VANRPRGFAFLRYA+EEES+KAIEGMHGK   S L+
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKALPSPLS 156

[Close]

BLAST of CaUC04G078400 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 132/164 (80.49%), Postives = 141/164 (85.98%), Query Frame = 0


Query: 34  MTAGLPFAITAAPNPLFQFQTTHHYNIRSTETHMRIQSIQSQLAYSSTPLSFFSVRKTRS 93
           MTAGL F +TAAP P F  QTTHH NIRSTETHMR QS QS+LAYSSTPL FFS RKT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 94  ISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 153
           IS+SPLFSVAC SSS  PSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSSS--PSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 154 DKVANRPRGFAFLRYATEEESRKAIEGMHGKEEQSQLTKPALAI 198
           D+VANRPRGFAFLRYA+EEES+KAIEGMHGK     +  P L I
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKVYSMDIPSPPLLI 162

[Close]

BLAST of CaUC04G078400 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-25
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 87  SVRKTRSISDSPLFSVACNSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL 146
           S R+ R I    + S     SS  P      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 147 VEVNLVMDKVANRPRGFAFLRYATEEESRKAIEGMHGK 185
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of CaUC04G078400 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-14
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 105 NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFA 164
           +S SPP        + +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+A
Sbjct: 273 DSESPP------VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 332

Query: 165 FLRYATEEESRKAIEGMHGK 185
           FL Y TEE +  A++ M+GK
Sbjct: 333 FLEYTTEEAAGTALKEMNGK 346

[Close]

BLAST of CaUC04G078400 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-14
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 106 SSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAF 165
           + S  P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 166 LRYATEEESRKAIEGMHGK 185
           +RYAT E+S K I GM GK
Sbjct: 102 VRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of CaUC04G078400 vs. TAIR 10
Match: AT2G27330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 30/72 (41.67%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 114 RRYTP-------STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFL 173
           R +TP       S+ L+V G+SF +TEE+L  AF  +GQ+++V+++MDK+  RP+GFA++
Sbjct: 8   RSFTPLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67

Query: 174 RYATEEESRKAI 179
            ++++EE+ KA+
Sbjct: 68  TFSSKEEAEKAL 79

[Close]

BLAST of CaUC04G078400 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-11
Identity = 32/81 (39.51%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 105 NSSSPPPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFA 164
           NSS+     +R   +++L++ GLSF TTE+ L  AF   GQ+VE  +VMD+V++R +GF 
Sbjct: 19  NSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFG 78

Query: 165 FLRYATEEESRKAIEGMHGKE 186
           F+ +A+ +E++KA+   +G++
Sbjct: 79  FVTFASADEAQKALMEFNGQQ 99

The following BLAST results are available for this feature:

BLAST of CaUC04G078400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949592.1	7.1e-72	64.06	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
KAG6607420.1	9.2e-72	64.06	Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg...	[more]
XP_038895072.1	1.0e-70	68.56	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_038895073.1	1.4e-67	84.15	organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Benincasa h...	[more]
XP_038895074.1	5.2e-67	86.62	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa h...	[more]

BLAST of CaUC04G078400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	4.4e-24	58.16	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q8L440	2.7e-13	46.25	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	2.7e-13	49.37	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q6YWP9	5.9e-13	51.56	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
C0HFE5	1.7e-12	50.00	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]

BLAST of CaUC04G078400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCJ4	3.4e-72	64.06	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A1S3AYF6	1.4e-65	65.07	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	7.7e-64	64.07	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A5A7SXY0	2.2e-63	83.54	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S4E0R2	2.2e-63	80.49	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]

BLAST of CaUC04G078400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	3.1e-25	58.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.9e-14	46.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.9e-14	49.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27330.1	1.5e-11	41.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	4.4e-11	39.51	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..194 e-value: 4.5E-19 score: 79.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..185 e-value: 1.6E-16 score: 59.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..185 score: 16.278412
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 89..197 e-value: 2.4E-23 score: 84.8
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 35..185
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 35..185
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 107..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G078400.1	CaUC04G078400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding