CaUC04G077790 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G077790
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	Ciama_Chr04: 27213865 .. 27215550 (+)
RNA-Seq Expression	CaUC04G077790
Synteny	CaUC04G077790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGCACAAGAGCACGTCACCGGCTGTCGGTTCCGACGAACAGCCGCGAGAGGATGTTGCTGACTTTGTGATCAAGCCTCACAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTTCTGAAAAACTACGACCGTCTTAATGTACGTACTGGTCATTACACTCCTCTGCCGTCTGGTTTCTTGCCTCTCAAACGGCCTCTGGCTGAGTATATCAGGTACGGTATTCTCAATCTTGATAAACCAGCGAATCCGTCGTCGCACGAAGTTGTTGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACTCTGGACCCAAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAACTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGGACGTTATGTGTGCACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGGAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGTTGTTGAGATTTGAAAACGATATTGGAGCTGGGGAAGAAGTTGTACTTATGACCACCAAAGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGCGACCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAGTGGGGACTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAGCCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGCTACCGACACTGCAACTGCTAAGCCTACTGCTGCAGAAGAGACAGGAAAAGATGATGGTGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGGCTGAAAAGGCTGAAGAAGTTGAAGAAGAAGTTGGGAAGAAAGAAAAGAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTACTGCAGAAGAACCTTCGGATGAGGAGAATGTTGAGAATTCAGAGAAGAAAAAGAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAGTCTGGAAATGACGATTCTCAATTACCTGCTGCTGATGTTCAAAACGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAGAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

mRNA sequence

ATGTCGAAGCACAAGAGCACGTCACCGGCTGTCGGTTCCGACGAACAGCCGCGAGAGGATGTTGCTGACTTTGTGATCAAGCCTCACAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTTCTGAAAAACTACGACCGTCTTAATGTACGTACTGGTCATTACACTCCTCTGCCGTCTGGTTTCTTGCCTCTCAAACGGCCTCTGGCTGAGTATATCAGGTACGGTATTCTCAATCTTGATAAACCAGCGAATCCGTCGTCGCACGAAGTTGTTGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACTCTGGACCCAAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAACTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGGACGTTATGTGTGCACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGGAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGTTGTTGAGATTTGAAAACGATATTGGAGCTGGGGAAGAAGTTGTACTTATGACCACCAAAGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGCGACCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAGTGGGGACTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAGCCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGCTACCGACACTGCAACTGCTAAGCCTACTGCTGCAGAAGAGACAGGAAAAGATGATGGTGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGGCTGAAAAGGCTGAAGAAGTTGAAGAAGAAGTTGGGAAGAAAGAAAAGAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTACTGCAGAAGAACCTTCGGATGAGGAGAATGTTGAGAATTCAGAGAAGAAAAAGAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAGTCTGGAAATGACGATTCTCAATTACCTGCTGCTGATGTTCAAAACGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAGAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

Coding sequence (CDS)

ATGTCGAAGCACAAGAGCACGTCACCGGCTGTCGGTTCCGACGAACAGCCGCGAGAGGATGTTGCTGACTTTGTGATCAAGCCTCACAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTTCTGAAAAACTACGACCGTCTTAATGTACGTACTGGTCATTACACTCCTCTGCCGTCTGGTTTCTTGCCTCTCAAACGGCCTCTGGCTGAGTATATCAGGTACGGTATTCTCAATCTTGATAAACCAGCGAATCCGTCGTCGCACGAAGTTGTTGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACTCTGGACCCAAAGGTAACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTTGTGAAATCGCAACAGGGTGCGGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCTGCTGTGAAAAGACAACTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTATGTTAGGACGTTATGTGTGCACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGGAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGTTGTTGAGATTTGAAAACGATATTGGAGCTGGGGAAGAAGTTGTACTTATGACCACCAAAGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGCGACCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAGTGGGGACTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAGCCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCCACTGCTACCGACACTGCAACTGCTAAGCCTACTGCTGCAGAAGAGACAGGAAAAGATGATGGTGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGCTAAGAAACTGAAGGCTGAAAAGGCTGAAGAAGTTGAAGAAGAAGTTGGGAAGAAAGAAAAGAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTACTGCAGAAGAACCTTCGGATGAGGAGAATGTTGAGAATTCAGAGAAGAAAAAGAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAGTCTGGAAATGACGATTCTCAATTACCTGCTGCTGATGTTCAAAACGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAGAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

Protein sequence

MSKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPAADVQNGEADGHVDGSEKKKKKKKKNKEDAEE

Homology

[Close]

BLAST of CaUC04G077790 vs. NCBI nr
Match: XP_038894523.1 (H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida])

HSP 1 Score: 992.3 bits (2564), Expect = 1.7e-285
Identity = 532/568 (93.66%), Postives = 540/568 (95.07%), Query Frame = 0


Query: 8   SPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPL 67
           S AVGSDEQP +DV DF+IKP S  PPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPL
Sbjct: 2   SSAVGSDEQPWKDVVDFMIKPSSVAPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPL 61

Query: 68  KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA 127
           KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA
Sbjct: 62  KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA 121

Query: 128 TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI 187
           TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI
Sbjct: 122 TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI 181

Query: 188 YESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN 247
           YESKLLEYD DKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN
Sbjct: 182 YESKLLEYDVDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN 241

Query: 248 MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG 307
           MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG
Sbjct: 242 MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG 301

Query: 308 LLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK 367
           LLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK
Sbjct: 302 LLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK 361

Query: 368 WGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------ATDTATAKP 427
           WGLGPRASMKKKLIGEGKLDKHGKPNE TPQEW+RNLVLPT          ATDTATAKP
Sbjct: 362 WGLGPRASMKKKLIGEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSLVASVFATDTATAKP 421

Query: 428 TAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKE-KKKKKKKDKEKGTA 487
           TAAEETGKD GGRKRKLDEETEAAP KKLKA+KAE+VEEEVGKKE KKKKKKKDKEKGTA
Sbjct: 422 TAAEETGKDGGGRKRKLDEETEAAPGKKLKADKAEDVEEEVGKKEKKKKKKKKDKEKGTA 481

Query: 488 EEPSDEENVENSEKKKKKKD---KEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPAADV 547
           EEPSDEENVENSEKKKKKKD   KEAKEAGTPET+KS+KKKKKKD ESGNDDS + AADV
Sbjct: 482 EEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETEKSKKKKKKKDNESGNDDSHIHAADV 541

Query: 548 QNGEADGHVDGSEKKKKKKKKNKEDAEE 562
           QNGEADGHVDGSEKKKKKKKKNKEDAEE
Sbjct: 542 QNGEADGHVDGSEKKKKKKKKNKEDAEE 569

[Close]

BLAST of CaUC04G077790 vs. NCBI nr
Match: XP_038894282.1 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida])

HSP 1 Score: 986.5 bits (2549), Expect = 9.5e-284
Identity = 529/575 (92.00%), Postives = 543/575 (94.43%), Query Frame = 0


Query: 1   MSKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSK++S SPAVGSDEQP++DVADF+IKP+S+TPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKNRSMSPAVGSDEQPQKDVADFMIKPNSYTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYD DKHLVVFWISCEAGTYVRTLCV LGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDVDKHLVVFWISCEAGTYVRTLCVXLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLG-PRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------A 420
           RDTYPRKWGLG P    +K L+ EGKLDKHGKPN NTPQEW+RNLVLPT          A
Sbjct: 361 RDTYPRKWGLGHPGHQXRKNLLREGKLDKHGKPNANTPQEWLRNLVLPTGGDSLVASILA 420

Query: 421 TDTATAKPTAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKK 480
           TDTATAKPT AEETGKDDGGRKRKLDEETEAAP KKLKAEKAEEVEEEVGKKEKKKKKKK
Sbjct: 421 TDTATAKPTTAEETGKDDGGRKRKLDEETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKK 480

Query: 481 DKEKGTAEEPSDEENVENSEKKKKKKD---KEAKEAGTPETQKSEKKKKKKDKESGNDDS 540
           DKEKGTAEEPSDEENVENSEKKKKKKD   KEAKEAGTPETQKS+KKKKKKD ESGNDDS
Sbjct: 481 DKEKGTAEEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDS 540

Query: 541 QLPAADVQNGEADGHVDGSEKKKKKKKKNKEDAEE 562
           QL AADVQNGEADGHVDGSEKKKKKK K  ++A+E
Sbjct: 541 QLHAADVQNGEADGHVDGSEKKKKKKDKEAKEAKE 575

[Close]

BLAST of CaUC04G077790 vs. NCBI nr
Match: XP_011650148.1 (H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus] >KAE8652522.1 hypothetical protein Csa_013456 [Cucumis sativus])

HSP 1 Score: 982.6 bits (2539), Expect = 1.4e-282
Identity = 530/572 (92.66%), Postives = 539/572 (94.23%), Query Frame = 0


Query: 1   MSKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKH S S AV SDEQP ++VADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+LPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------AT 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT           +
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 DTATAKPTAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKD 480
           D+ATAKPTAAEE+GKDDGGRKRKLDEETEAAPAKKLK E+     EEVGKKE KKKKKKD
Sbjct: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEV----EEVGKKE-KKKKKKD 480

Query: 481 KEKGTAEEPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPA 540
           KEK TAEEPS+EE VENSEKKKKKKDKEAKEA TPET KSEKKKKKKDKESGNDDSQLPA
Sbjct: 481 KEKDTAEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPA 540

Query: 541 ADVQNGEADGHVDGSE-KKKKKKKKNKEDAEE 562
           ADVQNGEA  H DGSE KKKKKKKKNKEDAEE
Sbjct: 541 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of CaUC04G077790 vs. NCBI nr
Match: XP_008449192.1 (PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucumis melo])

HSP 1 Score: 980.3 bits (2533), Expect = 6.8e-282
Identity = 528/572 (92.31%), Postives = 540/572 (94.41%), Query Frame = 0


Query: 1   MSKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKH S S AV SDEQP ++VADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+LPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------AT 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEW+RNLVLPT          AT
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 DTATAKPTAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKD 480
           ++ATAKPTAAEE+GKDDGGRKRKLDE+TEAAPAKKLK E+     EEVGKKE KKKKKKD
Sbjct: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEV----EEVGKKE-KKKKKKD 480

Query: 481 KEKGTAEEPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPA 540
           KEKGTAEEPS+EE VE SEKKKKKKDKEAKEAGTPET KSEKKKKKKDKESGNDDSQLPA
Sbjct: 481 KEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPA 540

Query: 541 ADVQNGEADGHVDGSE-KKKKKKKKNKEDAEE 562
           ADVQNGEA  H DGSE KKKKKKKKNKEDAEE
Sbjct: 541 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of CaUC04G077790 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 948.3 bits (2450), Expect = 2.9e-272
Identity = 511/569 (89.81%), Postives = 529/569 (92.97%), Query Frame = 0


Query: 2   SKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK +  SPAVGSDEQP++D ADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KV+RALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAA- 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPT  D+  A   AA 
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAAD 437

Query: 422 ------EETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEE--EVGKKEKKKKKKKDKE 481
                 +ET KD GGRKRKLDE+ EAAP KKLK EKAEE EE  EVGKKE KKKKKKDKE
Sbjct: 438 AADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKE-KKKKKKDKE 497

Query: 482 KGTAEEPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPAAD 541
           KG   EP+DEENVE SEKKKKKKDKEAKEAGTPET+KSEKKKKKKDKESGND SQ PA  
Sbjct: 498 KGNV-EPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAG- 557

Query: 542 VQNGEADGHVDGSEKKKKKKKKNKEDAEE 562
           +QNGEADGHVDGSEKKKKKKKKNK DAEE
Sbjct: 558 IQNGEADGHVDGSEKKKKKKKKNK-DAEE 582

[Close]

BLAST of CaUC04G077790 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 744.6 bits (1921), Expect = 8.3e-214
Identity = 413/557 (74.15%), Postives = 456/557 (81.87%), Query Frame = 0


Query: 15  EQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPLKRPLAEY 74
           E    D  D++IKP SFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G  PLKRPL EY
Sbjct: 18  ENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEY 77

Query: 75  IRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 134
           IRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQ
Sbjct: 78  IRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 137

Query: 135 QGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 194
           QGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLE
Sbjct: 138 QGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 197

Query: 195 YDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDV 254
           YDAD+HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE +NMVTMHDV
Sbjct: 198 YDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDV 257

Query: 255 MDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 314
           MDAQ+VYDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND
Sbjct: 258 MDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 317

Query: 315 IGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 374
           I  G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA
Sbjct: 318 IDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 377

Query: 375 SMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAAEETGKDDG------ 434
           SMKKKLI +GKLDKHGKPNE TP EW RN+VLPT  D   A   AA E  K D       
Sbjct: 378 SMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAG 437

Query: 435 -GRKRKLDEETEAAPAKKLKAEKAEEVE-EEVGKKEKKKKKKKDKEKGTAEEPSDEENVE 494
             RKRK D+ +++      K  K +EVE EE  +K K  KKKK K+K   EE  +EE   
Sbjct: 438 EARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDK---EEEKEEEAGS 497

Query: 495 NSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPAADVQNGEADGHVDGSE 554
             ++KKKKKDK+ +      + KSEKKKKKK K++        A D ++  A    +  +
Sbjct: 498 EKKEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTE------AAVDAEDESAAEKSEKKK 557

Query: 555 KKKKKKKKNK--EDAEE 562
           KKK KKKKNK  ED EE
Sbjct: 558 KKKDKKKKNKDSEDDEE 565

[Close]

BLAST of CaUC04G077790 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 3.2e-173
Identity = 330/500 (66.00%), Postives = 394/500 (78.80%), Query Frame = 0


Query: 17  PREDVAD------FVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPLKRP 76
           P EDVAD      F+IKP S    +DTSQWP+LLKN+D+LNV T HYTPLPSG  PLKR 
Sbjct: 21  PDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKRE 80

Query: 77  LAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRL 136
           +++Y+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIVCI+RATRL
Sbjct: 81  ISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRL 140

Query: 137 VKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYES 196
           VKSQQ AGKEYV + RLH+A+   +++ARA+ETLTGA+FQRPPLI+AVKRQLR+RTIYES
Sbjct: 141 VKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYES 200

Query: 197 KLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVT 256
           KL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSGILGE DNMVT
Sbjct: 201 KLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVT 260

Query: 257 MHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLR 316
           MHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAICYGAK+M+PG+LR
Sbjct: 261 MHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLR 320

Query: 317 FENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGL 376
           +E+ I   +E+V++TTKGEAI L IA MTTAV++TCDHGVVAKIKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380

Query: 377 GPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV--LPTATDTATAKPTAAEETGKDDG 436
           GP+AS KK +I +G LDKHGKPNE TP  W +  V    ++   A   P A  E  +   
Sbjct: 381 GPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYVDYRESSKKEAAKVPQAVSEVERAP- 440

Query: 437 GRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEENVE-- 496
            RKR+ + E EA          A    EE+ KKEKKKKKK+ K K  AE  S EE VE  
Sbjct: 441 KRKRESESENEAVSP---PPSPATPPPEELSKKEKKKKKKEKKAKEAAE--SGEEQVEVI 500

Query: 497 ----NSEKKKKKKDKEAKEA 503
                 +KKKKKK KE +E+
Sbjct: 501 SESSAKKKKKKKKQKEVEES 514

[Close]

BLAST of CaUC04G077790 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 599.0 bits (1543), Expect = 5.6e-170
Identity = 334/559 (59.75%), Postives = 420/559 (75.13%), Query Frame = 0


Query: 2   SKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK KS+  +    EQ        VIKP   TP +DTS+WP+LLKNYD+L+VRTGHYTP+P
Sbjct: 7   SKSKSSEKSTQEVEQ--------VIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIP 66

Query: 62  SGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           +G  PLKRP+ EY++YGI+NLDKP+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LI
Sbjct: 67  NGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLI 126

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCI+RATRLVKSQQGAGKEY+ + RLH A+   +++++A++TLTGA+FQRPP  SAVK++
Sbjct: 127 VCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKR 186

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LR+RTI+ SKLLE+D +++L + W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRVRSGI
Sbjct: 187 LRVRTIHNSKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGI 246

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           + EK   VTMHDV DAQ+ YDN KDESYLRRVI PLE +LT+YKR+VVKDSA+NAICYGA
Sbjct: 247 MSEKKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGA 306

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLR+E DI + EEVVL+TTKGEAIA+GIA+MTTA MATCDHGVVA IKRV+MDR
Sbjct: 307 KLMIPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDR 366

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAAE 421
           D YP +WGLGP+A +KK++I +GKLDK GKPNE TP +W       T    AT   T+  
Sbjct: 367 DVYPVRWGLGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTG-QVATTTTTSPV 426

Query: 422 ETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKDK----EKGTAE 481
           E+   D  +K        A+ A K + E +E+ E+ V KKEKK KK+K K    ++   E
Sbjct: 427 ESMNVDTPKK------ATASVAVKAEVESSED-EKPVPKKEKKDKKEKKKDSSDDESEEE 486

Query: 482 EPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGND-DSQLPAADVQNG 541
           + S ++  E  EKK+KK+ K +K+    E+ K EKK KK+ K S  D DS+  ++D +  
Sbjct: 487 KSSKKDKKEKKEKKEKKEKKSSKDDSDDESSKKEKKDKKRKKSSDKDSDSEKESSDKK-- 540

Query: 542 EADGHVDGSEKKKKKKKKN 556
                 D  +KK+KKK KN
Sbjct: 547 ------DKKDKKEKKKSKN 540

[Close]

BLAST of CaUC04G077790 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 594.7 bits (1532), Expect = 1.1e-168
Identity = 315/524 (60.11%), Postives = 391/524 (74.62%), Query Frame = 0


Query: 3   KHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPS 62
           K K   P    D    +   +F+IKP S    +DTSQWP+LLKN+D+LNVRT HYTPLP 
Sbjct: 15  KKKDRKPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPC 74

Query: 63  GFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIV 122
           G  PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIV
Sbjct: 75  GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134

Query: 123 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQL 182
           CI+RATRLVKSQQ AGKEYV + RLH+A+   ++++RALETLTGA+FQRPPLI+AVKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194

Query: 183 RIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIL 242
           R+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSG++
Sbjct: 195 RVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVM 254

Query: 243 GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAK 302
            EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK
Sbjct: 255 SEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAK 314

Query: 303 LMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRD 362
           +M+PGLLR+E+ I   +E+V++TTKGEAI + IA MTTAV++TCDHG+VAKIKRV+M+RD
Sbjct: 315 IMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERD 374

Query: 363 TYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAAEE 422
           TYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ +                 
Sbjct: 375 TYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYI----------------- 434

Query: 423 TGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDE 482
               D G+   +   TEA  A +L AE    +           K+K+D E  + E P+  
Sbjct: 435 -DYSDSGKNTLV---TEAVQAPQLAAEAVNVI-----------KRKRDSESESDETPT-- 494

Query: 483 ENVENSEKKKKKKDKEAK-------EAGTPETQKSEKKKKKKDK 520
             V   ++KKKKKDK+ K       E G  +   ++KKKKKK K
Sbjct: 495 --VPQLKEKKKKKDKKPKTVLESGGETGDGDNDTTKKKKKKKVK 502

[Close]

BLAST of CaUC04G077790 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 593.2 bits (1528), Expect = 3.1e-168
Identity = 314/505 (62.18%), Postives = 394/505 (78.02%), Query Frame = 0


Query: 3   KHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPS 62
           K K   P   +D    +   DF+IKP S    +DTSQWP+LLKN+DRLNVRT HYTP+P 
Sbjct: 16  KKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPC 75

Query: 63  GFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIV 122
           G  PLKR + EY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIV
Sbjct: 76  GSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 135

Query: 123 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQL 182
           CI+RATRLVKSQQ AGKEYV V RLH+A+   ++++RALETLTGA+FQRPPLI+AVKRQL
Sbjct: 136 CIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQL 195

Query: 183 RIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIL 242
           R+RTIYES+++EYD ++ L VFW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSG++
Sbjct: 196 RVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVV 255

Query: 243 GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAK 302
           GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK
Sbjct: 256 GERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAK 315

Query: 303 LMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRD 362
           +M+PGLLR+E+ I   +EVV++TTKGEA+ + IA MTTAV++TCDHGVVAKIKRV+M+RD
Sbjct: 316 IMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERD 375

Query: 363 TYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAAEE 422
           TYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ V       ++ K TAAE 
Sbjct: 376 TYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYV---DYSDSSKKATAAEA 435

Query: 423 TG----KDDGGR--KRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTA 482
           T       D     KRK D +++A  A      +           +K+KKKKK+K  G  
Sbjct: 436 TPGPGVTADAASIVKRKRDSDSDADEATPTTTPRV----------KKEKKKKKEKADG-G 495

Query: 483 EEPSDEENVENSEKKKKKKDKEAKE 502
           EE +++ + + + KKKKKK + A+E
Sbjct: 496 EEAAEDGDGDATRKKKKKKARAAEE 506

[Close]

BLAST of CaUC04G077790 vs. ExPASy TrEMBL
Match: A0A1S3BLH6 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491111 PE=3 SV=1)

HSP 1 Score: 980.3 bits (2533), Expect = 3.3e-282
Identity = 528/572 (92.31%), Postives = 540/572 (94.41%), Query Frame = 0


Query: 1   MSKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKH S S AV SDEQP ++VADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+LPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------AT 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEW+RNLVLPT          AT
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 DTATAKPTAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEEEVGKKEKKKKKKKD 480
           ++ATAKPTAAEE+GKDDGGRKRKLDE+TEAAPAKKLK E+     EEVGKKE KKKKKKD
Sbjct: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEV----EEVGKKE-KKKKKKD 480

Query: 481 KEKGTAEEPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPA 540
           KEKGTAEEPS+EE VE SEKKKKKKDKEAKEAGTPET KSEKKKKKKDKESGNDDSQLPA
Sbjct: 481 KEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPA 540

Query: 541 ADVQNGEADGHVDGSE-KKKKKKKKNKEDAEE 562
           ADVQNGEA  H DGSE KKKKKKKKNKEDAEE
Sbjct: 541 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of CaUC04G077790 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 948.3 bits (2450), Expect = 1.4e-272
Identity = 511/569 (89.81%), Postives = 529/569 (92.97%), Query Frame = 0


Query: 2   SKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK +  SPAVGSDEQP++D ADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KV+RALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAA- 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPT  D+  A   AA 
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAAD 437

Query: 422 ------EETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEE--EVGKKEKKKKKKKDKE 481
                 +ET KD GGRKRKLDE+ EAAP KKLK EKAEE EE  EVGKKE KKKKKKDKE
Sbjct: 438 AADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKE-KKKKKKDKE 497

Query: 482 KGTAEEPSDEENVENSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPAAD 541
           KG   EP+DEENVE SEKKKKKKDKEAKEAGTPET+KSEKKKKKKDKESGND SQ PA  
Sbjct: 498 KGNV-EPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAG- 557

Query: 542 VQNGEADGHVDGSEKKKKKKKKNKEDAEE 562
           +QNGEADGHVDGSEKKKKKKKKNK DAEE
Sbjct: 558 IQNGEADGHVDGSEKKKKKKKKNK-DAEE 582

[Close]

BLAST of CaUC04G077790 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 929.9 bits (2402), Expect = 5.1e-267
Identity = 506/571 (88.62%), Postives = 519/571 (90.89%), Query Frame = 0


Query: 2   SKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    SPAVGSDEQP +DVADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGF PLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHS+VPDVSKVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAA- 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EWMRNLVLPT  D+  A   A+ 
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFASD 437

Query: 422 --------EETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVEE-EVGKKEKKKKKKKDK 481
                   +ET KD GGRKRKLDEETEAAPAKKLKAEK E+ EE E G K++KKKKKKDK
Sbjct: 438 SATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKDK 497

Query: 482 EKGTAEEPSDEENVENSEKKKKKKDKEAKEAGTP-ETQKSEKKKKKKDKESGNDDSQLPA 541
           EKG+  EPSDEEN    EKKKKKKDKE KEAGTP ETQKSEKKKKKKDKESG        
Sbjct: 498 EKGSG-EPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKKKKKDKESG-------V 557

Query: 542 ADVQNGEADGHVDGSEKKKKKKKKNKEDAEE 562
            DVQNGEAD HVDGSEKKKKKKKKNKEDAEE
Sbjct: 558 GDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of CaUC04G077790 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 928.7 bits (2399), Expect = 1.1e-266
Identity = 510/573 (89.01%), Postives = 520/573 (90.75%), Query Frame = 0


Query: 2   SKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    SPAVGSDEQP +DVADF+IKP SFTP VDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGF PLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHS+VPDVSKVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------ATD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EWMRNLVLPT          ATD
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFATD 437

Query: 422 TATAKPTAAEETGKDDGGRKRKLDEETEAAPAKKLKAEKAEEVE--EEVGKKEKKKKKKK 481
           +AT      +ET KD GGRKRKLDEETEAAPAKKLKAEK E+ E  EE GKKEKKKKKKK
Sbjct: 438 SATV-DEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKK 497

Query: 482 DKEKGTAEEPSDEENVENSEKKKKKKDKEAKEAGTP-ETQKSEKKKKKKDKESGNDDSQL 541
           DKEKG+  EPSDEEN E SE KKKKKDKE KEAGTP E QKSEKKKKKKDKESG      
Sbjct: 498 DKEKGSG-EPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSEKKKKKKDKESG------ 557

Query: 542 PAADVQNGEADGHVDGSEKKKKKKKKNKEDAEE 562
              DVQNGEAD HVDGSEKKKKKKKKNKEDAEE
Sbjct: 558 -VGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of CaUC04G077790 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 908.7 bits (2347), Expect = 1.2e-260
Identity = 503/576 (87.33%), Postives = 520/576 (90.28%), Query Frame = 0


Query: 2   SKHKSTSPAVGSDEQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK +  SP VGSDEQP +DVADF+IKP SFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGF PLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI  GEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPT----------ATD 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPT          A+D
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFASD 437

Query: 422 TATAKPTAAEETGKDDGGRKRKLDEETE-AAPAKKLKAEKAEEVE--EEVGKKEKKKKKK 481
           TAT K + A +  KD  GRKRK DEETE AAPAKKLK EK EE E  EE GKKE KKKKK
Sbjct: 438 TATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEEAEEIEESGKKE-KKKKK 497

Query: 482 KDKEKGTAEEPSDEENVENSEKKKKKKDKEAK-EAGTPETQKSE-KKKKKKDKESGNDDS 541
           KDKEKG   E SD+E  E SEKKKKKKDK+AK EAGTPET+KSE KKKKKKDKESGN   
Sbjct: 498 KDKEKG-GIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEKKKKKKKDKESGN--- 557

Query: 542 QLPAADVQNGEADGHVD-GSEKKKKKKKKNKEDAEE 562
                D QNGEA+GHVD GSEKKKKKKKKNKE+A+E
Sbjct: 558 -----DTQNGEAEGHVDGGSEKKKKKKKKNKEEADE 583

[Close]

BLAST of CaUC04G077790 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 744.6 bits (1921), Expect = 5.9e-215
Identity = 413/557 (74.15%), Postives = 456/557 (81.87%), Query Frame = 0


Query: 15  EQPREDVADFVIKPHSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPLKRPLAEY 74
           E    D  D++IKP SFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G  PLKRPL EY
Sbjct: 18  ENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEY 77

Query: 75  IRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 134
           IRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQ
Sbjct: 78  IRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 137

Query: 135 QGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 194
           QGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLE
Sbjct: 138 QGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 197

Query: 195 YDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDV 254
           YDAD+HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE +NMVTMHDV
Sbjct: 198 YDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDV 257

Query: 255 MDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 314
           MDAQ+VYDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND
Sbjct: 258 MDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 317

Query: 315 IGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 374
           I  G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA
Sbjct: 318 IDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 377

Query: 375 SMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTATDTATAKPTAAEETGKDDG------ 434
           SMKKKLI +GKLDKHGKPNE TP EW RN+VLPT  D   A   AA E  K D       
Sbjct: 378 SMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAG 437

Query: 435 -GRKRKLDEETEAAPAKKLKAEKAEEVE-EEVGKKEKKKKKKKDKEKGTAEEPSDEENVE 494
             RKRK D+ +++      K  K +EVE EE  +K K  KKKK K+K   EE  +EE   
Sbjct: 438 EARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDK---EEEKEEEAGS 497

Query: 495 NSEKKKKKKDKEAKEAGTPETQKSEKKKKKKDKESGNDDSQLPAADVQNGEADGHVDGSE 554
             ++KKKKKDK+ +      + KSEKKKKKK K++        A D ++  A    +  +
Sbjct: 498 EKKEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTE------AAVDAEDESAAEKSEKKK 557

Query: 555 KKKKKKKKNK--EDAEE 562
           KKK KKKKNK  ED EE
Sbjct: 558 KKKDKKKKNKDSEDDEE 565

[Close]

BLAST of CaUC04G077790 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 97.1 bits (240), Expect = 4.9e-20
Identity = 63/202 (31.19%), Postives = 98/202 (48.51%), Query Frame = 0


Query: 79  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 138
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 139 KEYVCVARLHSAVPDV-----------------SKVARALETLTGAVFQRPPLISAVK-- 198
           K Y  V RL  A   +                   + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 199 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 247
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of CaUC04G077790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894523.1	1.7e-285	93.66	H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida]	[more]
XP_038894282.1	9.5e-284	92.00	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Benincasa h...	[more]
XP_011650148.1	1.4e-282	92.66	H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus] >KAE8652522.1 hypoth...	[more]
XP_008449192.1	6.8e-282	92.31	PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucum...	[more]
XP_022145634.1	2.9e-272	89.81	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]

BLAST of CaUC04G077790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	8.3e-214	74.15	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q5ZJH9	3.2e-173	66.00	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
Q54T81	5.6e-170	59.75	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
Q9ESX5	1.1e-168	60.11	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]
P40615	3.1e-168	62.18	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]

BLAST of CaUC04G077790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLH6	3.3e-282	92.31	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo O...	[more]
A0A6J1CVU2	1.4e-272	89.81	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	5.1e-267	88.62	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	1.1e-266	89.01	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FP65	1.2e-260	87.33	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CaUC04G077790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	5.9e-215	74.15	homologue of NAP57	[more]
AT5G14460.1	4.9e-20	31.19	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 444..471
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 70..276 e-value: 6.2E-181 score: 602.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..561
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 471..525
None	No IPR available	PANTHER	PTHR23127:SF0	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT DKC1	coord: 8..559
None	No IPR available	PROSITE	PS50890	PUA	coord: 284..359 score: 19.007717
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 76..258 e-value: 1.09212E-134 score: 387.387
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 36..94 e-value: 6.0E-33 score: 125.5
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 37..94 e-value: 5.0E-30 score: 103.4
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 285..359 e-value: 3.7E-24 score: 96.2
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 285..357 e-value: 6.7E-21 score: 74.0
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 37..368 e-value: 6.2E-181 score: 602.6
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 98..214 e-value: 2.2E-19 score: 70.3
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 44..369 e-value: 3.2E-160 score: 530.5
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 8..559
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 215..281 e-value: 1.2E-22 score: 79.9
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 281..356 e-value: 2.5E-8 score: 32.1
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 284..365
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 37..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G077790.1	CaUC04G077790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding