CaUC04G077730 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G077730
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Glycine-rich RNA-binding protein 3
Location	Ciama_Chr04: 27130707 .. 27132642 (+)
RNA-Seq Expression	CaUC04G077730
Synteny	CaUC04G077730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCAACCAAAAAAGTTACCGTCCAATAGAGGAATTACACGTCAACCCCAACCAATATATTTCTCATCCTACGGTATTCATTCTCCTATTTATAATCCAACGGTGTACATACAAGCTTTAGTGTCTACTTATATCGCTCTTTCAAATCGGCTATCACAAAACCCTGCTCGAATTGAAGGCTTAGGGTTTAAGCTTGGCCGTGAAAGAAAGGAAGAAGAGAACGAACAAAGGTTCTATTTTCATTTCCGATTCATTTTTCGTTTCCTTTCCTTATTTTGTAATGATGCTAATCTTAATTCTTATGTTTCTGTATCTCATTATTCTTCGTTGTGGATTTTGATTGCTTGTGTTTGTGTTTAGATCTTTTGTTTTTCTGTAGAGATATTTTATTTGTCCATTTGAAGAAATACAAAGATTATTCTGGAAGATTATTCTTCCTGACTGAACTTAGATACGTTCTGATTTGAAGTTTTTTTTTCATTCTTCTTTTGTGTTTGCGTTCTTTTTTCGATTTTGAAAGTCAAGATTTCCACGATAACGTTCTGGGTATATATGCTCTGCTTAAAAATGATTCTGATCGTTGTTGAGTGCTCTTCTGCTACGGTTAGGACGGTTTGATCTGATGCCTCTATAGAACATCTATTCAAAGCGTGCATGAGAACATGATTAGTTTGATGTGGTAAAGATTGGCTATAATGGGTATTAATTTTAAGCTTTTTCACTTTTGAGATCACTTTGATCGCATGTTTCCACAATTTTTGTTTGTTTATCGTTTATTATGGATTATACAGTAGTACCTAAAACTTTCTTTTTTATTATGAAGTTGATGTACATTGTCGTTCAAAATATTTGCAGGTACGGTGTTATCTTGCACAACTACTTTTGTTCCCCATGGGGTTTAATTTCTTTTTTTGGGTAATTCTTTCAGGTTGTAAACATGGCTTTTCTTAGCAGAGTTGGAAAAATATTTAGTCAGGGTTCTGCATCAAGGATCGGTTCAGATTTTCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTTAGATTCATGTCAAGTTCGAAAATTTTTGTTGGAGGTTAGCTGGAATTCCAGTCCAGTTCTTCTGTTCTTTCTTACACCTTGGTGATCCTTTAGAACTTTCCCTGAGATCACGTTGCTTTGTACTGCAGGCCTTTCATATGGTACTGATGATCAGAGTCTGAGGGAAGCGTTCGCCAAGTATGGGGATGTAGTTGAAGGTGTGCAGGCAACTTATCTAACTGAACATTATTGAGTGGGAAAGCTAAAATTTTTGTTCTAGTATACATACCACTGTTGTTCATCCGTTTTGTAAAATTTGATTAACATTTAAAATTTCTGTAAGAACAGTAAAATTCGTGGGGGCACTTTCACTGCCAATGAAGAAGCATCTAGTGTGAGAATCTGATTTTTGTTTATGTTTACCTTTGTTTTAGCAAGAGTGATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCAATGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGTAAACATCAGCATAACTTTGCCATGAGTTTGTTTGCTGATCTGATGAAGGCCATTAAACCACCAGTTACAAGTAATTCAGTTATGGTTTAATATCTTTACTGTTTTCTCTCTTACGTTGGCCCATTTTTGTAATTAGGATCTCCATGGCCGTCGCATTAGATGCAACTTTGCAACTGAAAGGGCTCGGGGTGGTGGCTTTGGAGGGGGTGGCGGTTATGGTGGTGGTGGTGGTAGTGGTTATGGTGGCGGTGGCGGTTATAGCGGTGGAGGTTATAATCGCAGCAATGCACCCCAGGGAGGTGATGATTTTTTGGGAGGAGGAAAGTATGGAGACGAGGATAACGACGATGACTATGCGAAAAGGGCTTGA

mRNA sequence

ATGGCCGTCAACCAAAAAAGTTACCGTCCAATAGAGGAATTACACGTCAACCCCAACCAATATATTTCTCATCCTACGAAAGGAAGAAGAGAACGAACAAAGGTTGTAAACATGGCTTTTCTTAGCAGAGTTGGAAAAATATTTAGTCAGGGTTCTGCATCAAGGATCGGTTCAGATTTTCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTTAGATTCATGTCAAGTTCGAAAATTTTTGTTGGAGGCCTTTCATATGGTACTGATGATCAGAGTCTGAGGGAAGCGTTCGCCAAGTATGGGGATGTAGTTGAAGCAAGAGTGATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCAATGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGATCTCCATGGCCGTCGCATTAGATGCAACTTTGCAACTGAAAGGGCTCGGGGTGGTGGCTTTGGAGGGGGTGGCGGTTATGGTGGTGGTGGTGGTAGTGGTTATGGTGGCGGTGGCGGTTATAGCGGTGGAGGTTATAATCGCAGCAATGCACCCCAGGGAGGTGATGATTTTTTGGGAGGAGGAAAGTATGGAGACGAGGATAACGACGATGACTATGCGAAAAGGGCTTGA

Coding sequence (CDS)

ATGGCCGTCAACCAAAAAAGTTACCGTCCAATAGAGGAATTACACGTCAACCCCAACCAATATATTTCTCATCCTACGAAAGGAAGAAGAGAACGAACAAAGGTTGTAAACATGGCTTTTCTTAGCAGAGTTGGAAAAATATTTAGTCAGGGTTCTGCATCAAGGATCGGTTCAGATTTTCAGCCTTCCAAGCTGTCTATCTTTCAAACTTTTAGATTCATGTCAAGTTCGAAAATTTTTGTTGGAGGCCTTTCATATGGTACTGATGATCAGAGTCTGAGGGAAGCGTTCGCCAAGTATGGGGATGTAGTTGAAGCAAGAGTGATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGGTTTGTCACTTTCAATGCCAATGAAGAAGCATCTAGTGCTATTCAAGCTCTGGATGGACAGGATCTCCATGGCCGTCGCATTAGATGCAACTTTGCAACTGAAAGGGCTCGGGGTGGTGGCTTTGGAGGGGGTGGCGGTTATGGTGGTGGTGGTGGTAGTGGTTATGGTGGCGGTGGCGGTTATAGCGGTGGAGGTTATAATCGCAGCAATGCACCCCAGGGAGGTGATGATTTTTTGGGAGGAGGAAAGTATGGAGACGAGGATAACGACGATGACTATGCGAAAAGGGCTTGA

Protein sequence

MAVNQKSYRPIEELHVNPNQYISHPTKGRRERTKVVNMAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERARGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGGDDFLGGGKYGDEDNDDDYAKRA

Homology

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BLAST of CaUC04G077730 vs. NCBI nr
Match: KAG6572904.1 (Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.6 bits (649), Expect = 7.7e-64
Identity = 157/222 (70.72%), Postives = 167/222 (75.23%), Query Frame = 0


Query: 26  TKGRRERTKVVNMAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLS 85
           +K  RERTKVV+MAFLS+VGKIFSQ SASR+GS  QPS+LSIFQ  RFMSSSK+FVGGLS
Sbjct: 46  SKKGRERTKVVSMAFLSKVGKIFSQSSASRVGSISQPSQLSIFQAIRFMSSSKVFVGGLS 105

Query: 86  YGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHG 145
           YGTDD SLREAF KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHG
Sbjct: 106 YGTDDHSLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHG 165

Query: 146 RRIRCNFATERARGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGG--------- 205
           RRIR NFATER+R G F GGGGY GGGG GY GGGG     YNRS+A QGG         
Sbjct: 166 RRIRVNFATERSR-GSFVGGGGYSGGGG-GYSGGGGIGSADYNRSSASQGGDNYFSADSG 225

Query: 206 --------------------DDFLGGGKYGDEDNDDDYAKRA 219
                               DDFLGGGK  DEDN+DDYAKRA
Sbjct: 226 SDFTSNHQSGGGLDSGDNTRDDFLGGGKSEDEDNNDDYAKRA 265

[Close]

BLAST of CaUC04G077730 vs. NCBI nr
Match: XP_022994220.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 2.5e-62
Identity = 151/210 (71.90%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  R MSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRLMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGG--------------------- 217
           R G F GGGGY  GGG GY GGGGY    YNRS+A QGG                     
Sbjct: 121 R-GSFVGGGGYNSGGGGGYSGGGGYGSVDYNRSSASQGGDNYFSADSGSDFTSNHQSGGG 180

Query: 218 --------DDFLGGGKYGDEDNDDDYAKRA 219
                   DDFLGGGKYGDEDN+DDYAKRA
Sbjct: 181 LDSGDNTRDDFLGGGKYGDEDNNDDYAKRA 209

[Close]

BLAST of CaUC04G077730 vs. NCBI nr
Match: XP_022954706.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata] >KAG7012092.1 Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60
Identity = 151/210 (71.90%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  RFMSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGG--------------------- 217
           R G F GGGGY GGGG GY GGGG     YNRS+A QGG                     
Sbjct: 121 R-GSFVGGGGYSGGGG-GYSGGGGIGSADYNRSSASQGGDNYFSADSGSDFTSNHQSGGG 180

Query: 218 --------DDFLGGGKYGDEDNDDDYAKRA 219
                   DDFLGGGK GDEDN+DDYAKRA
Sbjct: 181 LDSGDNTRDDFLGGGKSGDEDNNDDYAKRA 208

[Close]

BLAST of CaUC04G077730 vs. NCBI nr
Match: XP_023541373.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023541374.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 4.0e-60
Identity = 146/210 (69.52%), Postives = 153/210 (72.86%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  RFMSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGG--------------------- 217
           RG   GGGG        GY GGGGY    YNRS+A QGG                     
Sbjct: 121 RGSFVGGGG--------GYSGGGGYGSADYNRSSASQGGDNYFSADSGSDFTSNHQSGGG 180

Query: 218 --------DDFLGGGKYGDEDNDDDYAKRA 219
                   DDFLGGGK GDEDN+DDYAKRA
Sbjct: 181 LDSGDNTRDDFLGGGKSGDEDNNDDYAKRA 202

[Close]

BLAST of CaUC04G077730 vs. NCBI nr
Match: XP_022137596.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 238.0 bits (606), Expect = 7.5e-59
Identity = 152/201 (75.62%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ S++RIGSD +P   SIFQT RFMSSSK+FVGGLSYGTDDQSLREAF
Sbjct: 1   MAFLSKVGKIFSQ-SSTRIGSDLRP---SIFQTIRFMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDL GRRIR NFATER+
Sbjct: 61  TKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERS 120

Query: 158 R-----GGGFGGGGGYGGGGGSGYGGGGGY--SGGGYNRSNAPQ------------GGDD 217
           R     GGG  GGGGYGGGG +GYGGGGGY   GGGY  S A                DD
Sbjct: 121 RGGFGGGGGGYGGGGYGGGGNAGYGGGGGYGRGGGGYGSSYAANDQSQSFSGDGDGNQDD 180

Query: 218 FLGGGKYGDE-DNDDDYAKRA 219
           FLGGGKY DE DN+DDYAKRA
Sbjct: 181 FLGGGKYRDEDDNNDDYAKRA 197

[Close]

BLAST of CaUC04G077730 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.6e-40
Identity = 102/171 (59.65%), Postives = 123/171 (71.93%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+ G I  Q +  ++ +    S  S+FQ  R MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VV+ RVILDR+TGRSRGFGFVTF ++E ASSAIQALDG+DLHGR ++ N+A +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSG--GGYNRSNAPQGGDDFLGGGKYG 207
            GGGF GGGGYGGGGG GYGG GGY G  GGY  S    GG    GG   G
Sbjct: 121 SGGGF-GGGGYGGGGG-GYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169

[Close]

BLAST of CaUC04G077730 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-35
Identity = 108/204 (52.94%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VG++FSQ S+    S       S+ Q+ R MSSSKIFVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
           +KYG+VV+A++I+DR+TGRSRGF FVTF + EEAS+A+Q LDGQDLHGRRIR N+ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 158 RG------------------------GGFGGG-GGYGG--------GGGSGYGGGGGYSG 207
            G                        GG+GGG GGYGG        GGG GYGG   Y G
Sbjct: 121 SGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGG 180

[Close]

BLAST of CaUC04G077730 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 75/141 (53.19%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++  I  QG    +         S+  + R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
             +G+V EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR+IR N ATER 
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 158 -ARGGGFGGGGGYGGGGGSGY 177
            A    FGGGGGYGGGGG GY
Sbjct: 121 SAPRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of CaUC04G077730 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.7e-27
Identity = 83/163 (50.92%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++G +  Q     I S+      S+  + R M S+K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
           A +GDVV+A+VI+DR+TGRSRGFGFV FN    A++AI  +DG++L+GR IR N A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 158 ARGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGGDDF 200
           +    +GGGGGY GGGG   GGGGGY GGG        GG  F
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGGGF 158

[Close]

BLAST of CaUC04G077730 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 78  KIFVGGLSYGTDDQSLREAFAKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQA 137
           + FVGGL + TDDQSL+ AF+KYGDV+++++I DR+TGRSRGFGFVTF ++E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 138 LDGQDLHGRRIRCNFATERAR--GGGF-GGGGGYGG----GGGSGYGGGGGYSGGGYNRS 197
           ++GQDL GR I  N A  R    GGGF GGGGGYGG    GGG GYGGGGG  GGG +  
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSGG 126

Query: 198 NAPQGGDDFLGGGKYG 207
               G  D  GGG YG
Sbjct: 127 GGGYGSRDG-GGGGYG 141

[Close]

BLAST of CaUC04G077730 vs. ExPASy TrEMBL
Match: A0A6J1K0M4 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111490023 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.2e-62
Identity = 151/210 (71.90%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  R MSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRLMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGG--------------------- 217
           R G F GGGGY  GGG GY GGGGY    YNRS+A QGG                     
Sbjct: 121 R-GSFVGGGGYNSGGGGGYSGGGGYGSVDYNRSSASQGGDNYFSADSGSDFTSNHQSGGG 180

Query: 218 --------DDFLGGGKYGDEDNDDDYAKRA 219
                   DDFLGGGKYGDEDN+DDYAKRA
Sbjct: 181 LDSGDNTRDDFLGGGKYGDEDNNDDYAKRA 209

[Close]

BLAST of CaUC04G077730 vs. ExPASy TrEMBL
Match: A0A6J1GRM7 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111456883 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 5.0e-61
Identity = 151/210 (71.90%), Postives = 158/210 (75.24%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SASRIGS  QPS+LSIFQ  RFMSSSK+FVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVILDRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGRRIR NFATER+
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGG--------------------- 217
           R G F GGGGY GGGG GY GGGG     YNRS+A QGG                     
Sbjct: 121 R-GSFVGGGGYSGGGG-GYSGGGGIGSADYNRSSASQGGDNYFSADSGSDFTSNHQSGGG 180

Query: 218 --------DDFLGGGKYGDEDNDDDYAKRA 219
                   DDFLGGGK GDEDN+DDYAKRA
Sbjct: 181 LDSGDNTRDDFLGGGKSGDEDNNDDYAKRA 208

[Close]

BLAST of CaUC04G077730 vs. ExPASy TrEMBL
Match: A0A6J1C734 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009002 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.6e-59
Identity = 152/201 (75.62%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ S++RIGSD +P   SIFQT RFMSSSK+FVGGLSYGTDDQSLREAF
Sbjct: 1   MAFLSKVGKIFSQ-SSTRIGSDLRP---SIFQTIRFMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDL GRRIR NFATER+
Sbjct: 61  TKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERS 120

Query: 158 R-----GGGFGGGGGYGGGGGSGYGGGGGY--SGGGYNRSNAPQ------------GGDD 217
           R     GGG  GGGGYGGGG +GYGGGGGY   GGGY  S A                DD
Sbjct: 121 RGGFGGGGGGYGGGGYGGGGNAGYGGGGGYGRGGGGYGSSYAANDQSQSFSGDGDGNQDD 180

Query: 218 FLGGGKYGDE-DNDDDYAKRA 219
           FLGGGKY DE DN+DDYAKRA
Sbjct: 181 FLGGGKYRDEDDNNDDYAKRA 197

[Close]

BLAST of CaUC04G077730 vs. ExPASy TrEMBL
Match: A0A0A0LQL8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.0e-53
Identity = 134/184 (72.83%), Postives = 145/184 (78.80%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFSQ SAS I S FQPS LS+FQT RFMSSSK+FVGGLSYGTDDQ L EAF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVI+DRDTGRSRGFGFVTF A+E+ASSAIQALDGQDL GRRIRC++AT+RA
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 158 RGGGFGGGGGYGGG---GGSGYGGG-GGYSGGGYNRSNAPQGGDDFLGGGKYGDEDNDDD 217
            GGG GGGGGYGGG   GG GYGGG GGY GGGY             GGG YG     DD
Sbjct: 121 SGGG-GGGGGYGGGGGYGGGGYGGGRGGYGGGGY-------------GGGGYGGGGGGDD 170

[Close]

BLAST of CaUC04G077730 vs. ExPASy TrEMBL
Match: A0A6J1ECL7 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111431328 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 116/146 (79.45%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VGKIFS+ SAS I SD QPSKLSIFQ+ R MSSSK+FVGGLSYGTDDQSL+EAF
Sbjct: 1   MAFLSKVGKIFSKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLKEAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VVEARVI DRDTGRSRGFGFVTF ANEEASSAIQALDGQDLHGR IR NFATER+
Sbjct: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYS 184
           RGGG   GG  G    S Y GGGGY+
Sbjct: 121 RGGGGFDGGSSGYNRSSSYQGGGGYN 146

[Close]

BLAST of CaUC04G077730 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-41
Identity = 102/171 (59.65%), Postives = 123/171 (71.93%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+ G I  Q +  ++ +    S  S+FQ  R MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
            KYG+VV+ RVILDR+TGRSRGFGFVTF ++E ASSAIQALDG+DLHGR ++ N+A +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 158 RGGGFGGGGGYGGGGGSGYGGGGGYSG--GGYNRSNAPQGGDDFLGGGKYG 207
            GGGF GGGGYGGGGG GYGG GGY G  GGY  S    GG    GG   G
Sbjct: 121 SGGGF-GGGGYGGGGG-GYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169

[Close]

BLAST of CaUC04G077730 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-36
Identity = 108/204 (52.94%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAFLS+VG++FSQ S+    S       S+ Q+ R MSSSKIFVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATERA 157
           +KYG+VV+A++I+DR+TGRSRGF FVTF + EEAS+A+Q LDGQDLHGRRIR N+ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 158 RG------------------------GGFGGG-GGYGG--------GGGSGYGGGGGYSG 207
            G                        GG+GGG GGYGG        GGG GYGG   Y G
Sbjct: 121 SGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGG 180

[Close]

BLAST of CaUC04G077730 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-30
Identity = 75/141 (53.19%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++  I  QG    +         S+  + R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
             +G+V EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR+IR N ATER 
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 158 -ARGGGFGGGGGYGGGGGSGY 177
            A    FGGGGGYGGGGG GY
Sbjct: 121 SAPRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of CaUC04G077730 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-30
Identity = 75/141 (53.19%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++  I  QG    +         S+  + R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
             +G+V EA VI DR+TGRSRGFGFV+F+  + A++AI+ +DG++L+GR+IR N ATER 
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 158 -ARGGGFGGGGGYGGGGGSGY 177
            A    FGGGGGYGGGGG GY
Sbjct: 121 SAPRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of CaUC04G077730 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-28
Identity = 83/163 (50.92%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 38  MAFLSRVGKIFSQGSASRIGSDFQPSKLSIFQTFRFMSSSKIFVGGLSYGTDDQSLREAF 97
           MAF +++G +  Q     I S+      S+  + R M S+K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM-STKLFIGGLSWGTDDASLRDAF 60

Query: 98  AKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLHGRRIRCNFATER- 157
           A +GDVV+A+VI+DR+TGRSRGFGFV FN    A++AI  +DG++L+GR IR N A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 158 ARGGGFGGGGGYGGGGGSGYGGGGGYSGGGYNRSNAPQGGDDF 200
           +    +GGGGGY GGGG   GGGGGY GGG        GG  F
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGGGF 158

The following BLAST results are available for this feature:

BLAST of CaUC04G077730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572904.1	7.7e-64	70.72	Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022994220.1	2.5e-62	71.90	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_022954706.1	1.0e-60	71.90	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata] >KAG...	[more]
XP_023541373.1	4.0e-60	69.52	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022137596.1	7.5e-59	75.62	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]

BLAST of CaUC04G077730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	3.6e-40	59.65	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	4.6e-35	52.94	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	1.1e-28	53.19	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	2.7e-27	50.92	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	1.3e-24	58.09	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of CaUC04G077730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0M4	1.2e-62	71.90	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GRM7	5.0e-61	71.90	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1C734	3.6e-59	75.62	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A0A0LQL8	3.0e-53	72.83	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV...	[more]
A0A6J1ECL7	3.8e-48	79.45	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of CaUC04G077730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	2.6e-41	59.65	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	3.3e-36	52.94	glycine-rich RNA-binding protein 5	[more]
AT3G23830.1	7.8e-30	53.19	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	7.8e-30	53.19	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	1.9e-28	50.92	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 78..151 e-value: 3.4E-29 score: 113.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 79..149 e-value: 7.0E-23 score: 80.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 77..155 score: 21.855528
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 69..194 e-value: 2.0E-35 score: 123.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..218
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 38..204
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 38..204
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 73..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G077730.1	CaUC04G077730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding