CaUC04G077690 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G077690
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionmitochondrial import receptor subunit TOM5 homolog
LocationCiama_Chr04: 27092189 .. 27094346 (+)
RNA-Seq ExpressionCaUC04G077690
SyntenyCaUC04G077690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACGCTCCGAGTTCGGTGAAGAAGGTGAAGAATCTTCTCTTTTCCGGAACTGCAAATTCGGTGGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGGTACTCTTCCGATCCTTTAAATTTCAATTCAAAATCTATGTCTTTCTTCTTAGCCTGGAATTTTCGATCTCCCAAAATGTTCTAAGTGTGGTTTCTAGGATTGGGCAACATCCGTTCTATCGTTTATATTGCATTATTAAGGCCTTGCGCTCTGCGCTCTGTTTGGTAGCTGAGATTTTTTTTTCATTTACGGCAACGGAATATAAAGTGTCGATCCTCTGATGGAAATGTGCATTTTTTAGTCTGACACGAGTAGATTTAAGTCGTACTCGAATCTGTTAACCGTTATTACTGTTTTGAAATTGAAGAAATTTCAGGAGGAGATGTAAGTTTTCTCCGAGATCGGTCTTGCTAGAGAATATTTGGTCATGTTAAATTCAATAACTTGTTGGATGGGCTATTTGTGAAGTTGTATGTGTTTAGAGCAGTTAGCAGTCTCTTCACTTTATCTAAATTTGTTACGTTTTCCTTCTGGTTTGACACCTTGCTTTTTGTTGTCTCAAACTGTGAATATCATTCTTTTTCTCACTTTTGAAATTCCGTAATAGAGGGGGAAAAAAAGGAATCTTTTGGTTTTCGGTAATTACAAACGAGTGGTAGGTTTTCCTCTGTTTAGCACTTGTTTATTGGTTTGTTGAAGCTGGGAAGATTAAAGGGAAAATTGAACGTAATGGATTTGGGTTGGTTCTCTAAACCATCTTATTTAAATTGATGTTTTAACTTAAGCCATGGCCCTCACAATCTTACCTGAACAAGATATGTTCTATAGGTTGTACAGCTATGTCCTTCTAAGGACACAAGAACCAAAGTTTGGTGGATGAACTGCTAATTAAACTGCCAATGGGCCTTGGTCCGGCAGCTGCAGAGGATCGTTCTTGGTAGGCTACCAACCTGCTGGGATGGTTGCAAGGCGGTCTGACTTAAGCCATGGCCCTTAGCCTTTTTAGCCGATTTACACCTTATTTTGGTCATTAGAGGCTTACTCCTGCATGATAATGCACCAAGGCTACAATTATTTACACGTCTTGTGTGATGATTAAAAGAATGAAATTAATTTGCTCAAGTCTTAAAGAATATAAAGGTTCCCTTGTGTATGGAATGCCAATACGTGAGTTGTGGCAAATGATTAAAAACATTGAAGGCGAAAAAAAAAAAGTTCAATCCTGATAATAGTGGTGATGTTAAGGATGATATTTTAGAACTTTCAATTAAGTGGGCAGGGGTGTTCATATATATATTATATACACATTTCTATATAACTATTATATGTATGTTGCAACACTTAATGGATCATACAATCCTAGGATTTGTATAATTCTTTTTTTTAATTAAATTTGAAACTTGCACCTATACCACCTTGAGGCCCATTCATGGCTCTTCGAGAGGAAAGGCCTCAAGTCTACCTTTAGCTTTTTATAATATTGATTCGATGTTAATAATTTGCAGAAAGTTCTATGATATGTTCTGTCTTTGTGAGTATTCGGTAATAGTTGCGAATGCATCATAACTATCTCATCTCTTGTGTCATTTGTTCCTATTGAACCTGAAACATAAAACTAAACATGATGGGCGTTTTTCCATTTCCAATAAGCATCATAACTTTTCATCAAAAAGTAAGCATCACAGCTGTCTCTGCAGGTATATTTGGACTTTGAATGCATGAAAAGAAAGAATGCTCTGGCATTTGGAAGAGGGATGAATGTCATCGAATTGGGTTGTAGTTGTAACAGAGCTACTTTACTGCCTTAATTCATTATTTGGGACTTGGGAAAATATTGCTTAACTAAGATTTTGTAGAGGAAAGTCATGCTTATGCAAATTCTTTTTTGCAATAAACATTCACTTCTAAACAAAAGTATCTTTTTTTGTTTGTCTTTGAATATACCAACATTTCCTTGGTATGGCTGTATTTTATAAATAGAACTGAATCTCTCCTTTGTTGTTGCAGAAATTGCTTCGTGCTGCTGGGATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTGATGACAATATGA

mRNA sequence

ATGGCTGACGCTCCGAGTTCGGTGAAGAAGGTGAAGAATCTTCTCTTTTCCGGAACTGCAAATTCGGTGGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGGTACTCTTCCGATCCTTTAAATTTCAATTCAAAATCTATGTCTTTCTTCTTAGCCTGGAATTTTCGATCTCCCAAAATGTTCTAAGTGTGGTTTCTAGGATTGGGCAACATCCGTTCTATCGTTTATATTGCATTATTAAGGCCTTGCGCTCTGCGCTCTGTTTGTCTGACACGAGTAGATTTAAGTCGTACTCGAATCTGTTAACCGTTATTACTGTTTTGAAATTGAAGAAATTTCAGGAGGAGATTTGTATGTGTTTAGAGCAGTTAGCAGTCTCTTCACTTTATCTAAATTTGTTACGTTTTCCTTCTGGTTTGACACCTTGCTTTTTGTTGTCTCAAACTGTTTTCCTCTGTTTAGCACTTGTTTATTGGTTTGTTGAAGCTGGGAAGATTAAAGGGAAAATTGAACGTAATGGATTTGGGTTGGTTGTACAGCTATGTCCTTCTAAGGACACAAGAACCAAAAAATTGCTTCGTGCTGCTGGGATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTGATGACAATATGA

Coding sequence (CDS)

ATGGCTGACGCTCCGAGTTCGGTGAAGAAGGTGAAGAATCTTCTCTTTTCCGGAACTGCAAATTCGGTGGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGGTACTCTTCCGATCCTTTAAATTTCAATTCAAAATCTATGTCTTTCTTCTTAGCCTGGAATTTTCGATCTCCCAAAATGTTCTAAGTGTGGTTTCTAGGATTGGGCAACATCCGTTCTATCGTTTATATTGCATTATTAAGGCCTTGCGCTCTGCGCTCTGTTTGTCTGACACGAGTAGATTTAAGTCGTACTCGAATCTGTTAACCGTTATTACTGTTTTGAAATTGAAGAAATTTCAGGAGGAGATTTGTATGTGTTTAGAGCAGTTAGCAGTCTCTTCACTTTATCTAAATTTGTTACGTTTTCCTTCTGGTTTGACACCTTGCTTTTTGTTGTCTCAAACTGTTTTCCTCTGTTTAGCACTTGTTTATTGGTTTGTTGAAGCTGGGAAGATTAAAGGGAAAATTGAACGTAATGGATTTGGGTTGGTTGTACAGCTATGTCCTTCTAAGGACACAAGAACCAAAAAATTGCTTCGTGCTGCTGGGATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTGATGACAATATGA

Protein sequence

MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRSFKFQFKIYVFLLSLEFSISQNVLSVVSRIGQHPFYRLYCIIKALRSALCLSDTSRFKSYSNLLTVITVLKLKKFQEEICMCLEQLAVSSLYLNLLRFPSGLTPCFLLSQTVFLCLALVYWFVEAGKIKGKIERNGFGLVVQLCPSKDTRTKKLLRAAGMFAGSILLMRNYGDLMTI
Homology
[Close]
BLAST of CaUC04G077690 vs. NCBI nr
Match: XP_004137442.1 (mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_008451171.1 PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis melo] >TYJ98941.1 mitochondrial import receptor subunit TOM5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-13
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          MAD  SSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNM L R+
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. NCBI nr
Match: XP_038894051.1 (mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-13
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          MADA SSV KVKN LFSGTANSVETVKSFFNSQVYDEEKWALNM L R+
Sbjct: 1  MADASSSVNKVKNFLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. NCBI nr
Match: KAG6572899.1 (Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012088.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-12
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          M DA SSVKKVKN +FSGTANSVETVKSFFNSQV+DEEKWALNM L R+
Sbjct: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. NCBI nr
Match: XP_022924183.1 (mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_023001126.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita maxima] >XP_023520288.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita pepo subsp. pepo] >KAG6584406.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019992.1 Mitochondrial import receptor subunit TOM5-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-12
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          M DA SSVKKVKN LFSGTANSVETVKSF+NSQV+DEEKWALNM L R+
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. NCBI nr
Match: XP_022137624.1 (mitochondrial import receptor subunit TOM5 homolog [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-10
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          MADA SS+KKVKN + SGT+NSVETV+SF NSQ++DEEKWALNM L R+
Sbjct: 1  MADASSSMKKVKNFICSGTSNSVETVRSFLNSQIHDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. ExPASy TrEMBL
Match: A0A5D3BJP0 (Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001420 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          MAD  SSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNM L R+
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. ExPASy TrEMBL
Match: A0A0A0LSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          MAD  SSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNM L R+
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. ExPASy TrEMBL
Match: A0A1S3BQV4 (mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LOC103492520 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          MAD  SSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNM L R+
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. ExPASy TrEMBL
Match: A0A6J1KHR6 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495362 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          M DA SSVKKVKN LFSGTANSVETVKSF+NSQV+DEEKWALNM L R+
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. ExPASy TrEMBL
Match: A0A6J1EBN7 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431705 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 1  MADAPSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMVLFRS 50
          M DA SSVKKVKN LFSGTANSVETVKSF+NSQV+DEEKWALNM L R+
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRA 49

[Close]
BLAST of CaUC04G077690 vs. TAIR 10
Match: AT5G08040.1 (mitochondrial import receptor subunit TOM5 homolog )

HSP 1 Score: 41.6 bits (96), Expect = 9.9e-04
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 201 KLLRAAGMFAGSILLMRNYGDLMTI 226
           KLLRA GMFAG ++LMR+YGDLM +
Sbjct: 30  KLLRALGMFAGGVVLMRSYGDLMGV 54

The following BLAST results are available for this feature:
BLAST of CaUC04G077690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137442.13.7e-1389.80mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_0084511... [more]
XP_038894051.18.3e-1387.76mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida][more]
KAG6572899.14.1e-1283.67Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argy... [more]
XP_022924183.15.4e-1283.67mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_0230... [more]
XP_022137624.18.6e-1073.47mitochondrial import receptor subunit TOM5 homolog [Momordica charantia][more]
BLAST of CaUC04G077690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC04G077690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BJP01.8e-1389.80Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. mak... [more]
A0A0A0LSV31.8e-1389.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1[more]
A0A1S3BQV41.8e-1389.80mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1KHR62.6e-1283.67mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1EBN72.6e-1283.67mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662... [more]
BLAST of CaUC04G077690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08040.19.9e-0472.00mitochondrial import receptor subunit TOM5 homolog [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37251:SF1MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOGcoord: 19..225
IPR034553Mitochondrial import receptor subunit TOM5 homologue, viridiplantaePANTHERPTHR37251MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOGcoord: 19..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G077690.1CaUC04G077690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005742 mitochondrial outer membrane translocase complex