CaUC04G076640 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G076640
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTUBB2
LocationCiama_Chr04: 25953204 .. 25953742 (+)
RNA-Seq ExpressionCaUC04G076640
SyntenyCaUC04G076640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACAGTTAGCGCTCTGTATTGCTGCGATCCACGAGAAGTTAGAGGTGCGAATCCGACCATGAAGAAGTGGAGTCGTGGGAAAGGGATTAAGTTCACAGCCAGTTTTCGGAGGTCGGAATTCAGTTGGCCAGGGAATCTCAAACAACAGGTAACTCCACTCATTGTTGCTGAAATTAGATGGTTCAAGTCCCCAACTGTGAAAGAGTAGAATGAAGATTAGTTTCTTATAACTTGTGTAAATTACAATCAAATGCTTCCATTTGTCTAAATTTTAAGGTACTTACAACTTGGGGTTGTGAGTTTGAGAGTCCTAAAACAAATATCATAGAGTGCTTCATTGTCAAGAACCATACATTCATCAGCGTTCTCTACCAATTGATGAACTGAAAGAGTAGCATTATATGGCTCTACAACAGTGTCTGACACCTTTGGAGATGGAAACACTGAGAAAGTCAACATCATTCTATCTGGATATTCTTCCCTGATCTTGGAGATTAGAAGAGTCCCCATTCCTGATCCTGTTCCACCTCCAAGTGAA

mRNA sequence

GAACAGTTAGCGCTCTGTATTGCTGCGATCCACGAGAAGTTAGAGGTGCGAATCCGACCATGAAGAAGTGGAGTCGTGGGAAAGGGATTAAGTTCACAGCCAGTTTTCGGAGGTCGGAATTCAGTTGGCCAGGGAATCTCAAACAACAGGTACTTACAACTTGGGGTTGTGAGTTTGAGAGTCCTAAAACAAATATCATAGAAGTAGCATTATATGGCTCTACAACAGTGTCTGACACCTTTGGAGATGGAAACACTGAGAAAGTCAACATCATTCTATCTGGATATTCTTCCCTGATCTTGGAGATTAGAAGAGTCCCCATTCCTGATCCTGTTCCACCTCCAAGTGAA

Coding sequence (CDS)

ATGAAGAAGTGGAGTCGTGGGAAAGGGATTAAGTTCACAGCCAGTTTTCGGAGGTCGGAATTCAGTTGGCCAGGGAATCTCAAACAACAGGTACTTACAACTTGGGGTTGTGAGTTTGAGAGTCCTAAAACAAATATCATAGAAGTAGCATTATATGGCTCTACAACAGTGTCTGACACCTTTGGAGATGGAAACACTGAGAAAGTCAACATCATTCTATCTGGATATTCTTCCCTGATCTTGGAGATTAGAAGAGTCCCCATTCCTGATCCTGTTCCACCTCCAAGTGAA

Protein sequence

MKKWSRGKGIKFTASFRRSEFSWPGNLKQQVLTTWGCEFESPKTNIIEVALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE
Homology
[Close]
BLAST of CaUC04G076640 vs. NCBI nr
Match: KPI82472.1 (hypothetical protein ABL78_8519 [Leptomonas seymouri])

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-17
Identity = 61/133 (45.86%), Postives = 68/133 (51.13%), Query Frame = 0 

Query: 1   MKKWSRGKGIKFTASFRRSEFSWPGNLKQQV------LTTWGCEFESPKTNII------- 60
           MKK  RG G +FTAS RRSEFSWPG  +Q V       T W   F SP   ++       
Sbjct: 33  MKKCRRGNGTRFTASLRRSEFSWPGKRRQHVTPDITAATRW---FRSPNVGVVSFSVRKQ 92

Query: 61  -----------------------EVALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIR 98
                                   V LYGSTTVSDT GDG TEKV ++ SGYSS   EI 
Sbjct: 93  ISYRASLSMHIDSSEFSTSWCTDSVVLYGSTTVSDTRGDGMTEKVIMMRSGYSSRSFEIS 152

[Close]
BLAST of CaUC04G076640 vs. NCBI nr
Match: KAF0768944.1 (Uncharacterized protein FWK35_00004167 [Aphis craccivora])

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 61/133 (45.86%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 1   MKKWSRGKGIKFTASFRRSEFSWPGNLKQQVL------TTWGCEFESPKTNII------- 60
           MKKWSRG G   TAS RRS FS PGN +  V       T W     SP   ++       
Sbjct: 33  MKKWSRGNGTMLTASLRRSAFSCPGNRRHVVTPDMVNDTRW---LRSPYVGLVSFSVLKH 92

Query: 61  -----------------------EVALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIR 98
                                   VALYGSTTVS+TFGDG TE V II SGYSS I +I 
Sbjct: 93  MSYSASLSIRYDSSVFSTSWCTDSVALYGSTTVSETFGDGITEYVFIIRSGYSSRIFDIS 152

[Close]
BLAST of CaUC04G076640 vs. NCBI nr
Match: KAF3844547.1 (hypothetical protein F7725_007710 [Dissostichus mawsoni])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 54/103 (52.43%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 1   MKKWSRGKGIKFTASFRRSEFSWPGNLKQQVL------TTWGCEFESPKTNIIEVALYGS 60
           MKK S GKG   TASF RS  SWPG  +Q V       T+W  E          VALYGS
Sbjct: 183 MKKCSLGKGTMLTASFLRSALSWPGKRRQVVTPLMVAETSWWTE---------RVALYGS 242

Query: 61  TTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE 98
           TTVS+T+ +G T KV ++ SGYSS IL I  VP+P+PVPPP E
Sbjct: 243 TTVSETWSEGTTLKVFMMRSGYSSRILLIISVPMPEPVPPPRE 276

[Close]
BLAST of CaUC04G076640 vs. NCBI nr
Match: PKI41205.1 (hypothetical protein CRG98_038421 [Punica granatum])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 49  VALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE 98
           VALYGSTTVS+T GDGNTEKV+IILSGYSSLI EI+RVPIP+PVPPPSE
Sbjct: 74  VALYGSTTVSETLGDGNTEKVSIILSGYSSLIFEIKRVPIPEPVPPPSE 122

[Close]
BLAST of CaUC04G076640 vs. NCBI nr
Match: CAA7406916.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 49  VALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE 98
           VALYGSTTVS+TFGDG TEKV+I+ SGYSSLILE+RRVP+PDPVPPP+E
Sbjct: 109 VALYGSTTVSETFGDGKTEKVSIMRSGYSSLILEMRRVPMPDPVPPPNE 157

[Close]
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match: A0A0N1I0H4 (Uncharacterized protein OS=Leptomonas seymouri OX=5684 GN=ABL78_8519 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-17
Identity = 61/133 (45.86%), Postives = 68/133 (51.13%), Query Frame = 0 

Query: 1   MKKWSRGKGIKFTASFRRSEFSWPGNLKQQV------LTTWGCEFESPKTNII------- 60
           MKK  RG G +FTAS RRSEFSWPG  +Q V       T W   F SP   ++       
Sbjct: 33  MKKCRRGNGTRFTASLRRSEFSWPGKRRQHVTPDITAATRW---FRSPNVGVVSFSVRKQ 92

Query: 61  -----------------------EVALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIR 98
                                   V LYGSTTVSDT GDG TEKV ++ SGYSS   EI 
Sbjct: 93  ISYRASLSMHIDSSEFSTSWCTDSVVLYGSTTVSDTRGDGMTEKVIMMRSGYSSRSFEIS 152

[Close]
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match: A0A6G0ZDF6 (Uncharacterized protein OS=Aphis craccivora OX=307492 GN=FWK35_00004167 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.9e-16
Identity = 61/133 (45.86%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 1   MKKWSRGKGIKFTASFRRSEFSWPGNLKQQVL------TTWGCEFESPKTNII------- 60
           MKKWSRG G   TAS RRS FS PGN +  V       T W     SP   ++       
Sbjct: 33  MKKWSRGNGTMLTASLRRSAFSCPGNRRHVVTPDMVNDTRW---LRSPYVGLVSFSVLKH 92

Query: 61  -----------------------EVALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIR 98
                                   VALYGSTTVS+TFGDG TE V II SGYSS I +I 
Sbjct: 93  MSYSASLSIRYDSSVFSTSWCTDSVALYGSTTVSETFGDGITEYVFIIRSGYSSRIFDIS 152

[Close]
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match: A0A7J5Y7D1 (Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_007710 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 54/103 (52.43%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 1   MKKWSRGKGIKFTASFRRSEFSWPGNLKQQVL------TTWGCEFESPKTNIIEVALYGS 60
           MKK S GKG   TASF RS  SWPG  +Q V       T+W  E          VALYGS
Sbjct: 183 MKKCSLGKGTMLTASFLRSALSWPGKRRQVVTPLMVAETSWWTE---------RVALYGS 242

Query: 61  TTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE 98
           TTVS+T+ +G T KV ++ SGYSS IL I  VP+P+PVPPP E
Sbjct: 243 TTVSETWSEGTTLKVFMMRSGYSSRILLIISVPMPEPVPPPRE 276

[Close]
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match: A0A2I0IB29 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_038421 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 49  VALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE 98
           VALYGSTTVS+T GDGNTEKV+IILSGYSSLI EI+RVPIP+PVPPPSE
Sbjct: 74  VALYGSTTVSETLGDGNTEKVSIILSGYSSLIFEIKRVPIPEPVPPPSE 122

[Close]
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match: A0A7I8LBA7 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017594 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.0e-14
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 49  VALYGSTTVSDTFGDGNTEKVNIILSGYSSLILEIRRVPIPDPVPPPSE 98
           VALYGSTTVS+TFGDG TEKV+I+ SGYSSLILE+RRVP+PDPVPPP+E
Sbjct: 109 VALYGSTTVSETFGDGKTEKVSIMRSGYSSLILEMRRVPMPDPVPPPNE 157

The following BLAST results are available for this feature:
BLAST of CaUC04G076640 vs. NCBI nr
Match NameE-valueIdentityDescription
KPI82472.15.4e-1745.86hypothetical protein ABL78_8519 [Leptomonas seymouri][more]
KAF0768944.11.0e-1545.86Uncharacterized protein FWK35_00004167 [Aphis craccivora][more]
KAF3844547.11.1e-1452.43hypothetical protein F7725_007710 [Dissostichus mawsoni][more]
PKI41205.11.9e-1487.76hypothetical protein CRG98_038421 [Punica granatum][more]
CAA7406916.11.2e-1383.67unnamed protein product [Spirodela intermedia][more]
BLAST of CaUC04G076640 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0N1I0H42.6e-1745.86Uncharacterized protein OS=Leptomonas seymouri OX=5684 GN=ABL78_8519 PE=4 SV=1[more]
A0A6G0ZDF64.9e-1645.86Uncharacterized protein OS=Aphis craccivora OX=307492 GN=FWK35_00004167 PE=4 SV=... [more]
A0A7J5Y7D15.4e-1552.43Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_007710 PE=4 SV... [more]
A0A2I0IB299.2e-1587.76Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_038421 PE=4 SV=1[more]
A0A7I8LBA76.0e-1483.67Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017594 PE=4 SV... [more]
BLAST of CaUC04G076640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G076640.1CaUC04G076640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane