CaUC04G076190 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G076190
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr04: 25447443 .. 25451771 (+)
RNA-Seq ExpressionCaUC04G076190
SyntenyCaUC04G076190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGGGAACTAGATTTCTAAACATGAGGTTAGTCATCTTTCTTTCGGACGTTACTTAGGTCTACTTTCTGAATCCTTTTGATAATAGATGGGCATAAACAAGTTCATTCCACGTATCTGGTACTCCAGGCAGACACCAGTGACTACAATCTTGTGGAGCACCATCAGGCGTGCCGGGCTCACGATTCTTTGAAGGGTGACCATCCTTTCTGAATTCTGTTAGATATGTAATATTCAAGAACTGAACTTTATGCTTTACAGAATCCATTTGTTTGATTACATTTGAAATGAAAATATTGTTTTCTGGTTCATCTTCCAGCTTTGTGTAGTCTCTTTCTGGCTCCTTATCAGTGTTACAGTGACCCCCTTCACTCCATGTCCCACCCCTGCAAGTTTTACGTCAAAAGCTTGTTTCACAAAGCTACTAACCATGGACAAAATTCATTCATCTAGTCTCATCATGAACTGCAATAGGTTTCATGACTATATAACTTACCTGTAATGAACAGGAGAATAGCTGCGAAAGAAAACATGAGTTCTGTTTGGATCTAAATCTTCCTCCACCCATCGCTTCCATGTCTGTAGTGACCTCCGAAATGCTTCAATTACATCCATGCTCATATTCAACCTCCCCCCTTCTTGGAAATAGTAACCCCTGAAACAAAACTGGATCTTACTTTTTCATTTCCCATTCATGGATATAAAGGAAAGTACAAGTCCTTAAGCTAATTCAACGCAGTAATTCGATGAAATGTTTACATCTAGAGTCGAAACTTGTTAAGAGCCTATTTGGATTGACTTCTTAAGGGGGGTTTGATTTACCAACTTTATCAGTCGGTGTTTAACTCCACCAACTTTAGTAGTATTTACTATTAAAGTTTGCACATTTATTGAGAAACTCTATCTTCCCAACTCTCACCCCAAGCACAAACTTCTTAACTCCAACATATTAACTCTGTACATCAAAACTCAATTGAGTGCCAACCATCATGGATTGATCTTGTGGTAAATAGGGGTATAACCTTGGTAAAAGGCTAAAAAGTCATGGGTTTAATCCATAGTATCCACCTACTTAAGATTTAATATCCTACAAGTTTCCTTGACACCTAAATGTTGTAGAGTCAAACAAGTTATCCCATGAGATTAATCGAGGTGTACATAAACTGGCCCAAATAATCTCAGAGATAAATATATAATACCTCTACGTGTTTGAAAATACTCTCTTTGTATTTAAAATACCTTTAAGCACTTAGAAAGTCATTCTAAAACATGGTCAAACTAAAAGATTAGTTTTTGAAACCTTAGATTACTGATTGGTCTTTTGAAATTTAGCTCAAAAGTATGTTAGTTAAGTAAACTCATACATTTTAAAGGTCTTGTACTTATTCCACCAGTGGCCATCATTGAAAACTAGGACATCTGCACCAACCCATTGCTTGGAATACCAATGCAACTCATCAACTCGAATGGTACCATTAACTTGAGTGGGTGAGTTTCGAGGAGGCCGGCCAATGATGACCAGAAAAGGAACTCTGTAATATTCAACTGTAAGATTGTATTCTTGGAATCGCATGGTGAGAAATCCTTTGTGCTTGTTTATTGGCTTCCCATTTGCTTCATATATTGTTGAAATGTTTGAAACTCCCTGTGTTAGCATGCATAGCAGCGACTCCCATTGGTTTCGTCCGATGGAATCGCCAACAAACACAATCCTCCCATTTCGAACTCTCTCCAGTAACTCACTTGCATTGAATCTAAGGTTGTGGAACAAGACAATGTTTACAAATTTAGATACTTTTGAAGTTGAGTTCAAATCATGATAGTCAACCATCTAGAATATGAATATCTTTTACGGTTTTTAAAATTGAGGAGCATTGAACCTGAGCATTCACAATTCTATGTATGAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATTAAATATTCTAACAAGTCCAGATGGTTTGTTAAGCCTGTAATGGTCTAATGGATATGGCCTCTTACATTTATTGTAAAAAGAAATTAAATATTATTCACTTTGTGTCTTCCACTCGTGGTTCTTCTCTCCCATGCAATAGGTTGCATTTGATAATTATGTGAAATTAATATTATAAGCACTATTTTGACTTGAGTTTATTTATTTTGTTAATACTTCATGCTAATTTTGAAAATTGAAAAAATAATATTTAAAATTTATTTTTACTATTTTGAATTCGACTAATAATCCAAATGTTAACTTACGACGGTTTTAGATGGTTTCTAACAACATCATGATAGTCAACTATTGTAGATATTAATATCTTACACAATTTTCAAAATTTTAAATGTGTTGTCTAAAAAGATTAATTGACATACATATAAACCAACTGGGAATATTCACAATTATATGTATGAACAAGAAAAATAAACAAAAACGGTAGAAAAATTTAGAGAAAATAGACACAATTTTTAAGAATAAAAAAGAAAAATTATTTTAAATGACAAAATTTAAATAATAGCAAAATATCACTATATTGGTAAATATTTTGGTTTATTTTCCTATATTTGAAAAGATCTTATGACTCATCAATAATAAAGTATTAACTAAACTAATTTTTTTATAATGATTTGAATTTCTGTATTGGGATTGTTTTAGAAAGTTAAATTCCATAGTTTCATCCACTTCTTTGGTAAGATCCCACAAGATTACCTTTATTGGTTCCTCAACTTATGTTCATTATTTTAGAAAGAGAAAAGGAAACTGCCTTCCCTATCTGGTTCTTCCAATTATATATATTTTTTCCAAACCAGAATTAATTGCATTTAGTTTACTAAAAATCCAATTACTTTTGCTCGTTAAAAAGATAAGAAAAGAAAAGGAAAGAACCCATGCAAGAACTTCAAGACCAAGAAAGCTTATAGCCAATACATTTCATACCTTGGGAGATTGCAGCCGTTCGGCTGCCACCGCCACTTCCGGTAACCTTCATCTTTCCGGCCATTGTGGGTGCACCGGAATCCTGGATCAACAAATGGGCAATTCTCAGTGTAAGAGTGGAATGGATAAGTTTCATCCCAAACCCATTTACCATTGGAGTAATCACAAGCTGTTGGCGACAGCAACGACGGTGACGGGGTCGGGTTGTTTTGGGGGAGAATTTGGGAGAAAAAGTGATGGAAACGTAAGAGATCATAATATTGGTGATTGA

mRNA sequence

ATGGTTATGGGAACTAGATTTCTAAACATGAGCCGTTCGGCTGCCACCGCCACTTCCGGTAACCTTCATCTTTCCGGCCATTGTGGGTGCACCGGAATCCTGGATCAACAAATGGGCAATTCTCAGTGTAAGAGTGGAATGGATAAGTTTCATCCCAAACCCATTTACCATTGGAGTAATCACAAGCTGTTGGCGACAGCAACGACGGTGACGGGGTCGGGTTGTTTTGGGGGAGAATTTGGGAGAAAAAGTGATGGAAACGTAAGAGATCATAATATTGGTGATTGA

Coding sequence (CDS)

ATGGTTATGGGAACTAGATTTCTAAACATGAGCCGTTCGGCTGCCACCGCCACTTCCGGTAACCTTCATCTTTCCGGCCATTGTGGGTGCACCGGAATCCTGGATCAACAAATGGGCAATTCTCAGTGTAAGAGTGGAATGGATAAGTTTCATCCCAAACCCATTTACCATTGGAGTAATCACAAGCTGTTGGCGACAGCAACGACGGTGACGGGGTCGGGTTGTTTTGGGGGAGAATTTGGGAGAAAAAGTGATGGAAACGTAAGAGATCATAATATTGGTGATTGA

Protein sequence

MVMGTRFLNMSRSAATATSGNLHLSGHCGCTGILDQQMGNSQCKSGMDKFHPKPIYHWSNHKLLATATTVTGSGCFGGEFGRKSDGNVRDHNIGD
Homology
[Close]
BLAST of CaUC04G076190 vs. NCBI nr
Match: KAG7027184.1 (hypothetical protein SDJN02_11195, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.4e-22
Identity = 59/87 (67.82%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 11  SRSAATATSGNLHLSGHCGCTGILDQQMGNSQCKSGMDKFHPKPIYHWSNHKLLATAT-- 70
           S  AATATSGNLHLSGH   TGILDQQ GNSQ +S MD FHPKPI HWSNHKL AT T  
Sbjct: 103 SHPAATATSGNLHLSGHSEYTGILDQQRGNSQYRSEMDNFHPKPISHWSNHKLSATETSS 162

Query: 71  TVTGSGCFGGEFGRKSDGNVRDHNIGD 96
           + T SG F   F  ++D NVRDHN GD
Sbjct: 163 STTNSGRFRERFATRTDANVRDHNTGD 189

The following BLAST results are available for this feature:
BLAST of CaUC04G076190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027184.12.4e-2267.82hypothetical protein SDJN02_11195, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CaUC04G076190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC04G076190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC04G076190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G076190.1CaUC04G076190.1mRNA