CaUC04G076090 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G076090
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Small nuclear ribonucleoprotein G
Location	Ciama_Chr04: 25306079 .. 25307594 (-)
RNA-Seq Expression	CaUC04G076090
Synteny	CaUC04G076090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGACTCGCCATGACCATCTGCTCGATTAATTAGGGTTTTTTCCATCTCTCTGACCTTTGTTCTCCAAAAACCTCTTAACATCTCTTTCGTTCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAGTAAGTACATCTTCAATTTTACCTTGGTCATGTGTTTTGGTTCGATTATTTCAACTATTTTTCATTCGGTCCTCATTTTCCCCCTTCCTTTTGCAGATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTCTTTATCCTTTTCGTTGTCGCATTTGTTTTCTCTGGCTCAGTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATTTGATTTGCAATTTCGTTTTCTATTGATTGGTGTGTATTTTATTGCGCACTGAAACAAAACAACAGTCTGTTTGTAATGTGAGGATCCTGAAGTTGCGTCGTCCGAGTCTAGGGTTTAGGATTTAGTATTTACGTAACTGTTTGGAGACGAACGGAGGAAGGATTGGAACTTTAGCGTTAGATGATATAGCACTGAAGGTTGAATCTCTCTACCAAATTTAATGGTCATCTGCCATAGATTGAACATCAATATTTCAGTTACGGCATGTAAAATCGAGGGATTTCGAAATCTTGCATGTTGAATCTATGGTTATACAAATTGACGATGCTTCTGAATTGCATTTTGCAGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGGGTCGCTGTTATTTGTGTTCTAATCTTTCTCTATGTTTGCTTCAATTGTTTATCACTGCAATAGTCAAGAATTGATCACCCTTTTTGGTTTTCATTTCAGGTGATTAGGGGCAATAGTGTAGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGTGAACTTATTCTGTTTGAAGTTTGTTCGATTCTTGCTGCTGATCTGTTTTATAGATTGAGTGAGTAAAACATTCGGAACTGTAGTATGTATAATTTTGGGATGTTATGGATTTTAGATGGACTTCTTGTATTCCATCATTCTTGACAGGCGGATTATAATTCCAGCAATGGGGTTTCTGTATTATTATGGGATGGAGAGATTCGTTGCATTAGGTGAGACTTTTCTTACCAAACCTTTCATTCGGTCTCTGTTACAGCGCCAAGATCCAATTATATTGCAATCCTAGTGTATGAGTATCACTGTATCACTTTGAAACGTGCACATTAATCTTTCTATGGAGAGAATCCAAAGAGAGTTGGTTTCAACAGAAATCATTGCCAAATTGACCAATTTTGTATCAAACTCCATTTTCAATTTACGTTTGCTTTGTTTGTGTCCACTCCATTGTATGTTTCAAAGGTACAACGTTTGCAGAACCGTCATTGCCTCCTTGAGAAATTATGGAGACCCAT

mRNA sequence

GAAGACTCGCCATGACCATCTGCTCGATTAATTAGGGTTTTTTCCATCTCTCTGACCTTTGTTCTCCAAAAACCTCTTAACATCTCTTTCGTTCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTCTTTATCCTTTTCGTTGTCGCATTTGTTTTCTCTGGCTCAGTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATTTGATTTGCAATTTCGTTTTCTATTGATTGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTAGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGTGAACTTATTCTGTTTGAAGTTTGTTCGATTCTTGCTGCTGATCTGTTTTATAGATTGAGTGAGTAAAACATTCGGAACTGTAGTATGTATAATTTTGGGATGTTATGGATTTTAGATGGACTTCTTGTATTCCATCATTCTTGACAGGCGGATTATAATTCCAGCAATGGGGTTTCTGTATTATTATGGGATGGAGAGATTCGTTGCATTAGGTGAGACTTTTCTTACCAAACCTTTCATTCGGTCTCTGTTACAGCGCCAAGATCCAATTATATTGCAATCCTAGTGTATGAGTATCACTGTATCACTTTGAAACGTGCACATTAATCTTTCTATGGAGAGAATCCAAAGAGAGTTGGTTTCAACAGAAATCATTGCCAAATTGACCAATTTTGTATCAAACTCCATTTTCAATTTACGTTTGCTTTGTTTGTGTCCACTCCATTGTATGTTTCAAAGGTACAACGTTTGCAGAACCGTCATTGCCTCCTTGAGAAATTATGGAGACCCAT

Coding sequence (CDS)

ATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTCTTTATCCTTTTCGTTGTCGCATTTGTTTTCTCTGGCTCAGTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATTTGATTTGCAATTTCGTTTTCTATTGATTGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTAGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

Protein sequence

MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

Homology

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BLAST of CaUC04G076090 vs. NCBI nr
Match: KAA3465078.1 (putative small nuclear ribonucleoprotein G [Gossypium australe])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 81/125 (64.80%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ     S  +    + H +++   +L              + 
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----ISLEAPDPCVGHSYTVRNSLL--------------YA 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
           F    KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  FTRSFKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 107

Query: 121 VNRMQ 126
           V RMQ
Sbjct: 121 VGRMQ 107

[Close]

BLAST of CaUC04G076090 vs. NCBI nr
Match: XP_042945373.1 (probable small nuclear ribonucleoprotein G isoform X1 [Carya illinoinensis])

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-28
Identity = 83/127 (65.35%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ         L  SLS              F  ++   LQ R
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ-------IGLKKSLS--------------FIVLVVCGLQKR 60

Query: 61  FL----LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVE 120
           F     L+VKLNANR+V+GTLRGFDQFMNLV+DNTVEVNGN+K DIGMVVIRGNSVVTVE
Sbjct: 61  FWPKCGLLVKLNANRMVVGTLRGFDQFMNLVIDNTVEVNGNDKNDIGMVVIRGNSVVTVE 106

Query: 121 ALEPVNR 124
           ALEPVNR
Sbjct: 121 ALEPVNR 106

[Close]

BLAST of CaUC04G076090 vs. NCBI nr
Match: KHN02209.1 (Putative small nuclear ribonucleoprotein G [Glycine soja])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-28
Identity = 80/123 (65.04%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQSK                                  D  F 
Sbjct: 1   MSRSGQPPDLKKYMDKKLQSK---------------------------------SDSLFV 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
             LI KLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEP
Sbjct: 61  ASLIFKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEP 90

Query: 121 VNR 124
           VNR
Sbjct: 121 VNR 90

[Close]

BLAST of CaUC04G076090 vs. NCBI nr
Match: XP_004143329.1 (probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis melo] >XP_038881248.1 probable small nuclear ribonucleoprotein G [Benincasa hispida] >KAA0025250.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa] >KGN48269.1 hypothetical protein Csa_004211 [Cucumis sativus] >TYK07417.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-28
Identity = 79/125 (63.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  ----IKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 80

Query: 121 VNRMQ 126
           VNRMQ
Sbjct: 121 VNRMQ 80

[Close]

BLAST of CaUC04G076090 vs. NCBI nr
Match: XP_023517274.1 (probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 8.7e-28
Identity = 77/125 (61.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +K+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  ----IKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 80

Query: 121 VNRMQ 126
           VNRMQ
Sbjct: 121 VNRMQ 80

[Close]

BLAST of CaUC04G076090 vs. ExPASy Swiss-Prot
Match: O82221 (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-28
Identity = 72/123 (58.54%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEP
Sbjct: 61  ----IKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEP 78

Query: 121 VNR 124
           V R
Sbjct: 121 VGR 78

[Close]

BLAST of CaUC04G076090 vs. ExPASy Swiss-Prot
Match: P24715 (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-24
Identity = 66/121 (54.55%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MS SGQPP LKKYMDK+LQ                                         
Sbjct: 1   MSTSGQPPALKKYMDKQLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               + L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEP
Sbjct: 61  ----INLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEP 76

Query: 121 V 122
           V
Sbjct: 121 V 76

[Close]

BLAST of CaUC04G076090 vs. ExPASy Swiss-Prot
Match: Q9VXE0 (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 63  LIVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV 122
           +++KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Sbjct: 17  MMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of CaUC04G076090 vs. ExPASy Swiss-Prot
Match: Q54RX0 (Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum OX=44689 GN=snrpG PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-10
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 63  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE 120
           L +KLN NR V G LRGFD FMN+ + +TVE V+  EK +IGMV+IRGNS++ +E LE
Sbjct: 19  LAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLE 76

[Close]

BLAST of CaUC04G076090 vs. ExPASy Swiss-Prot
Match: Q3ZBL0 (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 63  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV 122
           L +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Sbjct: 17  LSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of CaUC04G076090 vs. ExPASy TrEMBL
Match: A0A4D9C622 (Small nuclear ribonucleoprotein G OS=Salvia splendens OX=180675 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 83/128 (64.84%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKF---CSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDL 60
           MSRSGQPPDLKKYMDKKLQS F   C  +  +  S  H+  L +        F ++  D 
Sbjct: 1   MSRSGQPPDLKKYMDKKLQSIFLLRCFRQLDVE-SSPHVNCLME--------FALISLD- 60

Query: 61  QFRFLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEA 120
                +++KLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEA
Sbjct: 61  -----VLLKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEA 113

Query: 121 LEPVNRMQ 126
           LEPV+R Q
Sbjct: 121 LEPVSRAQ 113

[Close]

BLAST of CaUC04G076090 vs. ExPASy TrEMBL
Match: A0A5B6V7F1 (Small nuclear ribonucleoprotein G OS=Gossypium australe OX=47621 GN=EPI10_000282 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.5e-29
Identity = 81/125 (64.80%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ     S  +    + H +++   +L              + 
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----ISLEAPDPCVGHSYTVRNSLL--------------YA 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
           F    KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  FTRSFKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 107

Query: 121 VNRMQ 126
           V RMQ
Sbjct: 121 VGRMQ 107

[Close]

BLAST of CaUC04G076090 vs. ExPASy TrEMBL
Match: A0A5D3C6A2 (Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001440 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 79/125 (63.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  ----IKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 80

Query: 121 VNRMQ 126
           VNRMQ
Sbjct: 121 VNRMQ 80

[Close]

BLAST of CaUC04G076090 vs. ExPASy TrEMBL
Match: A0A0A0KHH9 (Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 79/125 (63.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  ----IKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 80

Query: 121 VNRMQ 126
           VNRMQ
Sbjct: 121 VNRMQ 80

[Close]

BLAST of CaUC04G076090 vs. ExPASy TrEMBL
Match: A0A1S3CHS7 (Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 79/125 (63.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP
Sbjct: 61  ----IKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 80

Query: 121 VNRMQ 126
           VNRMQ
Sbjct: 121 VNRMQ 80

[Close]

BLAST of CaUC04G076090 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-29
Identity = 72/123 (58.54%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEP
Sbjct: 61  ----IKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEP 78

Query: 121 VNR 124
           V R
Sbjct: 121 VGR 78

[Close]

BLAST of CaUC04G076090 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-29
Identity = 71/123 (57.72%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQSKFCSSRASLSFSLSHLFSLAQLILEMFVFFEVMPFDLQFR 60
           MSRSGQPPDLKKYMDKKLQ                                         
Sbjct: 1   MSRSGQPPDLKKYMDKKLQ----------------------------------------- 60

Query: 61  FLLIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 120
               +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEP
Sbjct: 61  ----IKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMVVIRGNSIVTVEALEP 78

Query: 121 VNR 124
           V R
Sbjct: 121 VGR 78

[Close]

BLAST of CaUC04G076090 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 63  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVN 122
           L +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV 
Sbjct: 5   LQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVG 64

Query: 123 R 124
           R
Sbjct: 65  R 65

[Close]

BLAST of CaUC04G076090 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 63  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVTVEAL 120
           L+V L   R ++GTLR FDQF N V++   E  + G +  DI  G+ VIRG +VV +  L
Sbjct: 23  LLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGEL 82

[Close]

BLAST of CaUC04G076090 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 63  LIVKLNANRLVIGTLRGFDQFMNLVVDNTVE--VNGNEKTDI--GMVVIRGNSVVTVEAL 120
           L+V L   R ++GTLR FDQF N V++   E  + G +  DI  G+ VIRG +VV +  L
Sbjct: 23  LLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGEL 82

The following BLAST results are available for this feature:

BLAST of CaUC04G076090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA3465078.1	1.8e-28	64.80	putative small nuclear ribonucleoprotein G [Gossypium australe]	[more]
XP_042945373.1	3.0e-28	65.35	probable small nuclear ribonucleoprotein G isoform X1 [Carya illinoinensis]	[more]
KHN02209.1	3.9e-28	65.04	Putative small nuclear ribonucleoprotein G [Glycine soja]	[more]
XP_004143329.1	3.9e-28	63.20	probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PRE...	[more]
XP_023517274.1	8.7e-28	61.60	probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC04G076090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82221	6.9e-28	58.54	Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
P24715	4.6e-24	54.55	Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=...	[more]
Q9VXE0	4.5e-11	61.67	Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN...	[more]
Q54RX0	6.5e-10	58.62	Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum OX=44689 ...	[more]
Q3ZBL0	1.1e-09	58.33	Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1	[more]

BLAST of CaUC04G076090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D9C622	1.3e-29	64.84	Small nuclear ribonucleoprotein G OS=Salvia splendens OX=180675 GN=SNRPG PE=3 SV...	[more]
A0A5B6V7F1	8.5e-29	64.80	Small nuclear ribonucleoprotein G OS=Gossypium australe OX=47621 GN=EPI10_000282...	[more]
A0A5D3C6A2	1.9e-28	63.20	Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KHH9	1.9e-28	63.20	Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=...	[more]
A0A1S3CHS7	1.9e-28	63.20	Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 S...	[more]

BLAST of CaUC04G076090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23930.1	4.9e-29	58.54	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	6.4e-29	57.72	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.2	3.6e-24	88.52	probable small nuclear ribonucleoprotein G	[more]
AT3G14080.1	4.2e-04	42.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	4.2e-04	42.62	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 54..117 e-value: 1.3E-14 score: 64.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 64..116 e-value: 1.7E-16 score: 59.6
None	No IPR available	GENE3D	2.30.30.100		coord: 61..121 e-value: 4.9E-18 score: 66.5
None	No IPR available	PANTHER	PTHR10553:SF29	SMALL NUCLEAR RIBONUCLEOPROTEIN G	coord: 1..26 coord: 63..123
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 1..26
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 63..123
IPR034098	Small nuclear ribonucleoprotein G	CDD	cd01719	Sm_G	coord: 6..119 e-value: 1.24885E-33 score: 109.914
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 55..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G076090.1	CaUC04G076090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0097525	spliceosomal snRNP complex