CaUC04G075840 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G075840
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description60S acidic ribosomal protein P2-like
LocationCiama_Chr04: 25095820 .. 25100721 (-)
RNA-Seq ExpressionCaUC04G075840
SyntenyCaUC04G075840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTTGTTGCGGCTTATTTGTTGGCTGTTTTGGCCGGAAATACTCACCCTTCCATTGATGATATTAAAGCCATTCTCGGCTCTGGTATTTTCTATACTTCAACTCATTAATTTGCTGATTTTCCATTTCTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTCATGCATCGATGATTGTTCTGTAATTAGGCTTGTAAAGCAAACAATAGAGTAGAGTAATTAGGTTTAGGGCTTTGTCTAGTGGTTTGATTTGAATGGAGTTCATAAATTGAAATTGAATTGTTGATTTGGGTGAATTAACAAGTTGGAGTTGAAGTTGAAGATGAAGATGAAAGAATCGAGTTGCTTCTTTTCCAAGTTAAGGGTAAAGATTTAGCAGAGCTTGTAGCTTGTGGAAGGGAGAAGATGGCCTCTGTCCCTTCTGGTGGTTCTGCAATTCCGGTAGCCGGCGGCGATGGTGGTGCTTCTGCTGCTGCCTCTTTTGATGCTGCCGAGCCTGTCAAAGAGGAGAAGAAAGAAATTGTTGAAGAATCAGATGAAGTAATTAACTTTCTTTTCTTCTTTGTTTACTTAACTAATTCATTCATATTTACTTTATTGTTAAATCATAATTAAATATCTCTAAAAATTGCCATCATTGAGAATTTAGGGTTTTTTTTTTTTTTTTTTTCTCTTGCACTTAAACCCCAAATTCTTTATTGTGCTTTATTGCATTGTTTCATATATATAAATAATTTAACCTAATTGAATTAATTAAACTTGTTTATTCTTCTAACCAAATTCTTTGTGTTTCTTGTTTGGCTTGATTGCAGGATATGTGCTTCAGTCTTTTTGATTGACGAGATTGTGTCCTTCCCTTTCACAGTATTGTCTTTCAATATTCAAGTTTTGATTCATTTAAATTGCTATATATATACTTGGATTTTCGGCTAGTTATTTACGAGATTTTATTGTCGAGCTTTATATAATATATAGTCATGGACCAATTTATTTTGCTTTGAATTTATGATCTTTCTTGCATTCACATTTTACCATTACCTTAATTATGGTTCTATTTATCTTTTCCTTTTCTTTTGATTCTAGCTGCTTGGATTTATCTTTGTATAAAACTTAGTATTTAGTCAACACTTTTTAATTCTAATGTTTTTCGAACAAATCTAATTTCAATCAAATAAATATATATAAATATATATATTATCATAATTTTATTGTTCAAATGGATTATTTACATGTTCAAATATTATGGTGGTCACCTATCTAGTATTTAATATCTTACGTGTTTTATTATAGTGTTACGTGTAGGTTGGCTCGAACACTCACAAATATAAAAGGAAAAGAAAAAAAAAAAATGTTCTACTACGGTTTCTTGGGATTAAAGAAAAATTCATAAATTTTAAGGATTAAAATTATGAAACCTCGAGTTAATAAATTATGGTGAAAGTAACTCTAAGAAAAGATATCACCTTCCCTACAAAGTTGTGTTTTATTACAATTAATATTTATTCTCGCTGTCATTGAAATTATGTTCATATGTTTATTGTAAAGGAAATTTTCGATATTTAAAAATAAATAATGTTTGCATTTGACATAACGTCTTATAATCAGGTGTTGGCTACCCACTACAAAAAAGAATATCAAATTTTACCTGTTATTTAAAATTAAAAAAAAAAATTTTAAAAAATCTCTATTTGATTAAAATATTTTTTTGAACAAAATATCGAAAGAAAAGGGATTAGAGGGTGCACCAGGATATCTCAATTAGGTTGACACCTCTGTAGCACTCTCATCATGAAACTCGCATACAATGAAATCAGAACGGGTGAAGTGGTTGCAAAAAGAGCTTCTAGTTTAGAGCTATCATAATTACAAAAAATAGATGATTTAGAATACCATAGAGCAGCCAAAGAAATAATATCATCCCATAAGCAATTCTTATTTTTACTGATTCCTTGGATTCCTTAGAAGATTCTTCTATTATGCTCAAGCTAAATGCTCTAGAGCGTTGTTGTCAACAAACTACTGCTGAGAATTTTTTATTTGATTGAAATATCACTTTTGAATTTTTATAAATGTTTTATTATACTATTGAAATGTAAATCCACTAGTATTTCATATGGAAATAGGAACATAAAACGAAGGTAGCTTGAAATGTTGTGATAGAGTTTGGAGGCCTCAAAACATATACATATATATACATTATGTGGGTTGCTTTTATATTTAAATTTATAGATGAAAATTTTGTATTTGTTCATGTGAACAAATCTAAACATTGAGAGAGAAAAAAAAAAAGAAAAAAAAAAGAGGAAGATGTGTTGTTTCTCATCTCAATCCCACAATCTCTAACCTTTTTGTTGTTTCATTTTTAATCTTTTGGCTTCAGCAACAAACAAAGCATATACAAACATTTTCGTACACAACAGTTAAAAGTACAACAAAAAGTTTCAAGAGTTATGAAAAAAAAAAAAAAAAATCAATCCAAAACTCGGTAGTTAAAAGGAAACTTTTCCAAGTTTAGTATTAGTATAATTTTGAAACCATACTTAATAGTTTAAAGGCATTTTTTTTTTTTTTTTTTATAATAACCAAAAATGAATGTTTTGAAAAAGAAAAAAATAATAATTTGAATGGATGTGAAATCATATAATATTTGTTGTGTTAAGTAGAAAGAGAAAGCGTTGAAAAATGCCAATATCAGATGCCATATAGAAAGCACAGCGCCTTCATCACCTTTATTTCCATTAATGGAAAAGCCCTAATTCCCAGCTTCTTTAATCTTTATGAGCTCTGCCCATTCATTTCTTCTGCATTTTCCACAGCTTTTTCTTCTTCTTTTTCCCTCATCTCCTACATTACATACAATTTCTCTTCCCCATTTTCAAACCATTATTCTCCTACCTCCTCAACTCTCTGTTTTCTTTTCTTTTCTTTCCAGAAGAAGAAGATAATCATTAATCATGAAGGTGGTTGCTGCTTATTTGCTTGCTGTTTTGGGTGGAAACAAAACCCCTTCTGCTCAACATATCAACACCATTCTTGCCTCTGGTTCTTTCTTTTTTTTCTTCTCTCTTCTTGCTCTCTTGTCTGTTTTTGTTCATCATATACCTTGAAGAAACTGGTTTAAATGCTTCTAAAACCAACAAATGGAGTTTGTGTTTCTAAGCTCTCTAACCCCTTTGATTTTAGTAACCTATAATTTTGCCCCTAAAATAAAACGAATATGGGTTTCGAGATATGGTTCTAAACTTCAGACACATAAATTCTAGCTGTGAATATGAACATTTTCACAGCTAAACTTTCTAGGGTTTTGTAAGTTGTTTTGGGAGATTAATGGGTTTTTTTTTTTTTTTTTCTTTTTTTAGTTCAACAACTTGAAAGGTGTTGATTCAAACTAACTTTTGAGCTTTTGGTCTTGTTATGTTTAGTTTGGTGATTAATGGAAAATTTCACGGCTCAACTTTCTAGGTTTCATAAAGAAGATTATTTTGAGAAAAGTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAATTGGTAAAATCCTATTTGGACATAATTTTTAAGGTCATTCCTAAAAAACTCTCACTAAGGTTGCTGTTCAAACTAAGTGTTTGGATTTTTTTAATTTATTTATTATTTCTTGAAACGAATATATATAAACGTTGCTTGCTATTTTAAGATAGCATCTTGATGTATGAGCATCATTAACCTAGATTTCCCTTTTTTTTGTTCCTTTCCTTTTTAGAAAATCATTATTTGTTGGTTTGGGTTGTTTTTTTTTTTCTAATTAATAGTTTGATATACACTACATTATATCATTAATCGCTTTAAATTTTGTCAACTTGGCATAACTCAATTGATATTAAGTATATAATATCAACTTTGTGACATCTCATTATTTCTTCATTTTCTTTCATGTGAACATATCATAAATGAAAGCAAAAAATAAAATTCACATAAAACCCATTGAAATGTGTCGAATGTATATACAATTGTTTTAATAAACTTGTCCGTGCTTTTTGTGACAAGACACAAATCGATCAAAACCCATAAATCTTTTTGTTGACTTCACAAAATCCAAACCAACTAATGTTAGTTTACTAGAATTAACAGAACTCATTTGGTTTGGTCCATTTTTTTACCCTTAGCTGAATGTCATCTTTGATTGTACAACCCATAACTTGGAAGAAACTTTGCCTCTAACTTGTTCTATACATCAAAAAGTTATATGCATTGTAAATCACACCAAACTTTTAATTTTGTGCTAATAAGTTTAACTTTCAATTTTGAATCTATTAGGTTTGGGGTGAATAATGAAAATGTTAAACATAAAATTGTATTTGTGTGTAATAGAACATTATATTTTCAATTAGTTTTGTGAACTAAAAAATATTAAATACATTAATAAAAAGTTTAGAACTTCATTAGACACTTTTAAAGTTTAGAGATGCATTCGATGCAAATGTAAAAGTTTAAACTGGTAATCTTAACCCAAACTTAATGTCCATCAGCTCCACTGATGGTCAATGGTTAACATGTGCACAGTTGGAGCTGAAGTGGAAGATGAAAAGATGGAGCTGCTTCTTTCTCAAGTTAAGGGCAAGGATATAAGTGAGCTTATTGCCTGTGGGAGGGAGAAGATGGCATCATTACCTACTGGTGGCCTTGTTGCAGCTGCTGTGGGCGCAGTCGCCTCTACCGTGGATGTTGCTACTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGAGGGCGTGGAGTCTGATGAAGTAAATTACTTTCCCTTTAAAACTTTGGATTAGTTGTTAGAAAATAATTTATCATCAGTTTTGACTTTGTTTTCTTATTTGGTGTTACAGGACATTTGCTTCTCTCTGTTTGAAGATGACTAA

mRNA sequence

ATGAAGGTTGTTGCGGCTTATTTGTTGGCTGTTTTGGCCGGAAATACTCACCCTTCCATTGATGATATTAAAGCCATTCTCGGCTCTGTTGGAGTTGAAGTTGAAGATGAAGATGAAAGAATCGAGTTGCTTCTTTTCCAAGTTAAGGGTAAAGATTTAGCAGAGCTTGTAGCTTGTGGAAGGGAGAAGATGGCCTCTGTCCCTTCTGGTGGTTCTGCAATTCCGGTAGCCGGCGGCGATGGTGGTGCTTCTGCTGCTGCCTCTTTTGATGCTGCCGAGCCTGTCAAAGAGGAGAAGAAAGAAATTGTTGAAGAATCAGATGAAGTGGTTGCTGCTTATTTGCTTGCTGTTTTGGGTGGAAACAAAACCCCTTCTGCTCAACATATCAACACCATTCTTGCCTCTGTTGGAGCTGAAGTGGAAGATGAAAAGATGGAGCTGCTTCTTTCTCAAGTTAAGGGCAAGGATATAAGTGAGCTTATTGCCTGTGGGAGGGAGAAGATGGCATCATTACCTACTGGTGGCCTTGTTGCAGCTGCTGTGGGCGCAGTCGCCTCTACCGTGGATGTTGCTACTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGAGGGCGTGGAGTCTGATGAAGACATTTGCTTCTCTCTGTTTGAAGATGACTAA

Coding sequence (CDS)

ATGAAGGTTGTTGCGGCTTATTTGTTGGCTGTTTTGGCCGGAAATACTCACCCTTCCATTGATGATATTAAAGCCATTCTCGGCTCTGTTGGAGTTGAAGTTGAAGATGAAGATGAAAGAATCGAGTTGCTTCTTTTCCAAGTTAAGGGTAAAGATTTAGCAGAGCTTGTAGCTTGTGGAAGGGAGAAGATGGCCTCTGTCCCTTCTGGTGGTTCTGCAATTCCGGTAGCCGGCGGCGATGGTGGTGCTTCTGCTGCTGCCTCTTTTGATGCTGCCGAGCCTGTCAAAGAGGAGAAGAAAGAAATTGTTGAAGAATCAGATGAAGTGGTTGCTGCTTATTTGCTTGCTGTTTTGGGTGGAAACAAAACCCCTTCTGCTCAACATATCAACACCATTCTTGCCTCTGTTGGAGCTGAAGTGGAAGATGAAAAGATGGAGCTGCTTCTTTCTCAAGTTAAGGGCAAGGATATAAGTGAGCTTATTGCCTGTGGGAGGGAGAAGATGGCATCATTACCTACTGGTGGCCTTGTTGCAGCTGCTGTGGGCGCAGTCGCCTCTACCGTGGATGTTGCTACTCCTGTTGCAGCTGAGGCTAAGAAAGAGGAGAAAGAAGAGGGCGTGGAGTCTGATGAAGACATTTGCTTCTCTCTGTTTGAAGATGACTAA

Protein sequence

MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACGREKMASVPSGGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDEVVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREKMASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEKEEGVESDEDICFSLFEDD
Homology
BLAST of CaUC04G075840 vs. NCBI nr
Match: TVU45115.1 (hypothetical protein EJB05_04588 [Eragrostis curvula])

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-47
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MK VAAYLLAVLAGN +PS +D+ AIL SVG E+  ++E++ELLL Q+ GKD+ EL+A G
Sbjct: 1   MKFVAAYLLAVLAGNNNPSAEDLSAILESVGCEI--DNEKMELLLSQLSGKDITELIAAG 60

Query: 61  REKMASVPSGGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE------------ 120
           REK ASVPSGG  + VA     A  AA   AAE  KEEK E  EESD+            
Sbjct: 61  REKFASVPSGGGGVAVAAAAPSAGGAA--PAAEAKKEEKVEEKEESDDELESTGKACCLG 120

Query: 121 ----VVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACG 180
                VAAYLLAVL GN  PSA+ ++ IL SVG E+++EKMELLLSQ+ GKDI+ELIA G
Sbjct: 121 VSMKFVAAYLLAVLAGNNNPSAEDLSAILESVGCEIDNEKMELLLSQLSGKDITELIAAG 180

Query: 181 REKMASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEK-EEGVESDEDICFSLFE 220
           REK AS+P GG    AV A A     A P AAE+KKEEK EE  ESD+D+ FSLF+
Sbjct: 181 REKFASVPCGG-GGVAVAAAAPAAGGAAP-AAESKKEEKVEEKEESDDDMGFSLFD 230

BLAST of CaUC04G075840 vs. NCBI nr
Match: EEE63896.1 (hypothetical protein OsJ_18721 [Oryza sativa Japonica Group])

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-46
Identity = 131/233 (56.22%), Postives = 157/233 (67.38%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MK++AAYLLAVL GNT PS DDIK IL SVGVE    DER+E LL +++GKD+ E++A G
Sbjct: 85  MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEA--NDERLEFLLSELEGKDITEVIAAG 144

Query: 61  REKMASVPSGGS-----AIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE------- 120
           REK ASVPSGG      A P A G G A       A E  KEEK E  EESD+       
Sbjct: 145 REKFASVPSGGGGGIAVAAPTAAGGGAA------PAEEAKKEEKVEEKEESDDAFFNFTM 204

Query: 121 -VVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREK 180
            ++AAYLLAVLGGN +PSA  I  IL SVG E  DE++E LLS+++GKDI+E+IA GREK
Sbjct: 205 KLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREK 264

Query: 181 MASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEK-EEGVESDEDICFSLFE 220
            AS+P+GG    AV A  +    A P A EAKKEEK EE  ESD+D+ FSLF+
Sbjct: 265 FASVPSGGGGGIAVAAPTAAGGGAAP-AEEAKKEEKVEEKEESDDDMGFSLFD 308

BLAST of CaUC04G075840 vs. NCBI nr
Match: CAE6016443.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 179.1 bits (453), Expect = 4.2e-41
Identity = 128/280 (45.71%), Postives = 156/280 (55.71%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAA+LLAVL+G   P+  DIK ILGSVG   E ED +IELLL +VKGKDLAE++A G
Sbjct: 1   MKVVAAFLLAVLSGKASPTSADIKTILGSVG--AESEDAQIELLLKEVKGKDLAEVIASG 60

Query: 61  REKMASVPSGGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE------------ 120
           REK+ASVPSGG  + VA    G     +  AAE  KEEKKE  EESD+            
Sbjct: 61  REKLASVPSGGGGVAVASAPSGGGGGGA-PAAESKKEEKKEEKEESDDDMGFSLFDGRIE 120

Query: 121 -------------------------------------------------VVAAYLLAVLG 180
                                                            VVAA+LLAVL 
Sbjct: 121 ATIDVLEQEGAIADELEFPFLRTSSPSPSKNPNLTPPPARFINTCAKMKVVAAFLLAVLS 180

Query: 181 GNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREKMASLPTGGLVAA 220
           G  +P++  I TIL SVGAE ED ++ELLL +VKGKD+ ELIA GREK+AS+P+GG   A
Sbjct: 181 GKASPTSGDIKTILGSVGAETEDSQIELLLKEVKGKDLDELIAAGREKLASVPSGGGGVA 240

BLAST of CaUC04G075840 vs. NCBI nr
Match: CAA0372571.1 (unnamed protein product [Arabidopsis thaliana] >CAD5319684.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-40
Identity = 130/288 (45.14%), Postives = 154/288 (53.47%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE----------- 120
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+           
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFERCF 120

Query: 121 -------------------------------------------------------VVAAY 180
                                                                  VVAA+
Sbjct: 121 GNNRCRVEATFDVIDQEGAIEDEFSFFRTSSPSPSKNPNLTPPPARSINTSAKMKVVAAF 180

Query: 181 LLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREKMASLPT 220
           LLAVL G  +P+   I  IL SVGAE ED ++ELLL +VKGKD++ELIA GREK+AS+P+
Sbjct: 181 LLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPS 240

BLAST of CaUC04G075840 vs. NCBI nr
Match: ONK71237.1 (uncharacterized protein A4U43_C04F6300 [Asparagus officinalis])

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-39
Identity = 106/175 (60.57%), Postives = 129/175 (73.71%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL GN+ PS +DIK ILGSVG E   EDERIELLL +VKGKD+ EL+A G
Sbjct: 1   MKVVAAYLLAVLGGNSSPSAEDIKGILGSVGAEA--EDERIELLLCEVKGKDITELIASG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE--------VVA 120
           REK ASVP+ GG+A+ V+   GG +A A+  AAE  KEEK E  EESD+        +VA
Sbjct: 61  REKFASVPAGGGAAVAVSAAAGGGAAPAA--AAESKKEEKVEEKEESDDDMGFSLMKIVA 120

Query: 121 AYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGRE 167
           AYLLAV+GGN +PS  ++  IL SVGAE E+ ++E  LS+VK KDI+ELIA GR+
Sbjct: 121 AYLLAVMGGNTSPSVDNLKKILGSVGAEAEESRIEFFLSEVKDKDITELIASGRD 171

BLAST of CaUC04G075840 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.7e-25
Identity = 66/114 (57.89%), Postives = 88/114 (77.19%), Query Frame = 0

Query: 108 EVVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREK 167
           +V+AA+LLA+LGGN +P+ + + +ILASVGA+ +D+K+ELLLSQVKGKDI+ELIA GRE+
Sbjct: 2   KVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRER 61

Query: 168 MASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEKEEGVESDEDICFSLFEDD 222
           +AS+P+GG VA A  A     D     A E KKEEK E  ESDE++ FSLF+D+
Sbjct: 62  LASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSE-EESDEELGFSLFDDN 114

BLAST of CaUC04G075840 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-24
Identity = 72/111 (64.86%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 110 VAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREKMA 169
           VAAYLLAVL GN +PSA  +  IL SVG EV++EKMELLLSQ+ GKDI+ELIA GREK A
Sbjct: 4   VAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFA 63

Query: 170 SLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEK-EEGVESDEDICFSLFE 220
           S+P GG    AV A A     A P AAEAKKEEK EE  ESD+D+ FSLF+
Sbjct: 64  SVPCGG-GGVAVAAAAPAAGGAAP-AAEAKKEEKVEEKEESDDDMGFSLFD 112

BLAST of CaUC04G075840 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-23
Identity = 68/109 (62.39%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE 109
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDD 107

BLAST of CaUC04G075840 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22
Identity = 67/109 (61.47%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAA+LLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE 109
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDD 107

BLAST of CaUC04G075840 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-22
Identity = 63/113 (55.75%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 108 EVVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREK 167
           +V+AAYLLAVLGGN +P+A  + +IL SVGAE ++EK+E LL+++K KDI+E+IA GRE+
Sbjct: 2   KVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRER 61

Query: 168 MASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEK-EEGVESDEDICFSLFE 220
           ++S+P+GG  A  +GA A+        A EAKKEEK EE  ESDED+ FSLF+
Sbjct: 62  LSSVPSGG-GAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113

BLAST of CaUC04G075840 vs. ExPASy TrEMBL
Match: A0A5J9WB45 (Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_04588 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MK VAAYLLAVLAGN +PS +D+ AIL SVG E+  ++E++ELLL Q+ GKD+ EL+A G
Sbjct: 1   MKFVAAYLLAVLAGNNNPSAEDLSAILESVGCEI--DNEKMELLLSQLSGKDITELIAAG 60

Query: 61  REKMASVPSGGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE------------ 120
           REK ASVPSGG  + VA     A  AA   AAE  KEEK E  EESD+            
Sbjct: 61  REKFASVPSGGGGVAVAAAAPSAGGAA--PAAEAKKEEKVEEKEESDDELESTGKACCLG 120

Query: 121 ----VVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACG 180
                VAAYLLAVL GN  PSA+ ++ IL SVG E+++EKMELLLSQ+ GKDI+ELIA G
Sbjct: 121 VSMKFVAAYLLAVLAGNNNPSAEDLSAILESVGCEIDNEKMELLLSQLSGKDITELIAAG 180

Query: 181 REKMASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEK-EEGVESDEDICFSLFE 220
           REK AS+P GG    AV A A     A P AAE+KKEEK EE  ESD+D+ FSLF+
Sbjct: 181 REKFASVPCGG-GGVAVAAAAPAAGGAAP-AAESKKEEKVEEKEESDDDMGFSLFD 230

BLAST of CaUC04G075840 vs. ExPASy TrEMBL
Match: B9FPV2 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18721 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.4e-47
Identity = 131/233 (56.22%), Postives = 157/233 (67.38%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MK++AAYLLAVL GNT PS DDIK IL SVGVE    DER+E LL +++GKD+ E++A G
Sbjct: 85  MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEA--NDERLEFLLSELEGKDITEVIAAG 144

Query: 61  REKMASVPSGGS-----AIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE------- 120
           REK ASVPSGG      A P A G G A       A E  KEEK E  EESD+       
Sbjct: 145 REKFASVPSGGGGGIAVAAPTAAGGGAA------PAEEAKKEEKVEEKEESDDAFFNFTM 204

Query: 121 -VVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREK 180
            ++AAYLLAVLGGN +PSA  I  IL SVG E  DE++E LLS+++GKDI+E+IA GREK
Sbjct: 205 KLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREK 264

Query: 181 MASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEK-EEGVESDEDICFSLFE 220
            AS+P+GG    AV A  +    A P A EAKKEEK EE  ESD+D+ FSLF+
Sbjct: 265 FASVPSGGGGGIAVAAPTAAGGGAAP-AEEAKKEEKVEEKEESDDDMGFSLFD 308

BLAST of CaUC04G075840 vs. ExPASy TrEMBL
Match: A0A5S9X1S0 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS7855 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 130/288 (45.14%), Postives = 154/288 (53.47%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE----------- 120
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+           
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFERCF 120

Query: 121 -------------------------------------------------------VVAAY 180
                                                                  VVAA+
Sbjct: 121 GNNRCRVEATFDVIDQEGAIEDEFSFFRTSSPSPSKNPNLTPPPARSINTSAKMKVVAAF 180

Query: 181 LLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREKMASLPT 220
           LLAVL G  +P+   I  IL SVGAE ED ++ELLL +VKGKD++ELIA GREK+AS+P+
Sbjct: 181 LLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPS 240

BLAST of CaUC04G075840 vs. ExPASy TrEMBL
Match: A0A5P1F1E7 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F6300 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 8.5e-40
Identity = 106/175 (60.57%), Postives = 129/175 (73.71%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL GN+ PS +DIK ILGSVG E   EDERIELLL +VKGKD+ EL+A G
Sbjct: 1   MKVVAAYLLAVLGGNSSPSAEDIKGILGSVGAEA--EDERIELLLCEVKGKDITELIASG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE--------VVA 120
           REK ASVP+ GG+A+ V+   GG +A A+  AAE  KEEK E  EESD+        +VA
Sbjct: 61  REKFASVPAGGGAAVAVSAAAGGGAAPAA--AAESKKEEKVEEKEESDDDMGFSLMKIVA 120

Query: 121 AYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGRE 167
           AYLLAV+GGN +PS  ++  IL SVGAE E+ ++E  LS+VK KDI+ELIA GR+
Sbjct: 121 AYLLAVMGGNTSPSVDNLKKILGSVGAEAEESRIEFFLSEVKDKDITELIASGRD 171

BLAST of CaUC04G075840 vs. ExPASy TrEMBL
Match: A0A1S4E3U5 (60S acidic ribosomal protein P2-like OS=Cucumis melo OX=3656 GN=LOC103500881 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.6e-38
Identity = 91/114 (79.82%), Postives = 103/114 (90.35%), Query Frame = 0

Query: 108 EVVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREK 167
           +VVAAYLLAVLGGNKTPSAQ INTIL SVGAE + EK+ELLL++VKGKDI+ELIACGREK
Sbjct: 2   KVVAAYLLAVLGGNKTPSAQDINTILYSVGAEADVEKIELLLAEVKGKDITELIACGREK 61

Query: 168 MASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEKEEGVESDEDICFSLFEDD 222
           MASLPTG +VAA V AV STVD A PVAAEAKKEEK++ ++SDEDICFSLFED+
Sbjct: 62  MASLPTGAVVAAVVAAVPSTVDAAAPVAAEAKKEEKDDAMDSDEDICFSLFEDE 115

BLAST of CaUC04G075840 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-24
Identity = 68/109 (62.39%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE 109
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDD 107

BLAST of CaUC04G075840 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-24
Identity = 68/109 (62.39%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE 109
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDD 107

BLAST of CaUC04G075840 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-24
Identity = 68/109 (62.39%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAAYLLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE 109
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDD 107

BLAST of CaUC04G075840 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-23
Identity = 67/109 (61.47%), Postives = 76/109 (69.72%), Query Frame = 0

Query: 1   MKVVAAYLLAVLAGNTHPSIDDIKAILGSVGVEVEDEDERIELLLFQVKGKDLAELVACG 60
           MKVVAA+LLAVL+G   P+  DIK ILGSVG E   ED +IELLL +VKGKDLAEL+A G
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAET--EDSQIELLLKEVKGKDLAELIAAG 60

Query: 61  REKMASVPS-GGSAIPVAGGDGGASAAASFDAAEPVKEEKKEIVEESDE 109
           REK+ASVPS GG  + VA    G        AAE  KEEKKE  EESD+
Sbjct: 61  REKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDD 107

BLAST of CaUC04G075840 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-23
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 108 EVVAAYLLAVLGGNKTPSAQHINTILASVGAEVEDEKMELLLSQVKGKDISELIACGREK 167
           +V AA+LLAVLGGN  PSA +I  I+ +VGA+V+ E +ELLL +V GKDI+ELIA GREK
Sbjct: 2   KVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREK 61

Query: 168 MASLPTGGLVAAAVGAVASTVDVATPVAAEAKKEEKEEGVESDEDICFSLFE 220
           +AS+P+GG VA +    +     A P  AE K+ +KEE  ESD+D+ FSLFE
Sbjct: 62  LASVPSGGGVAVSAAPSSGGGGAAAP--AEKKEAKKEEKEESDDDMGFSLFE 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TVU45115.13.0e-4756.78hypothetical protein EJB05_04588 [Eragrostis curvula][more]
EEE63896.11.9e-4656.22hypothetical protein OsJ_18721 [Oryza sativa Japonica Group][more]
CAE6016443.14.2e-4145.71unnamed protein product [Arabidopsis arenosa][more]
CAA0372571.12.7e-4045.14unnamed protein product [Arabidopsis thaliana] >CAD5319684.1 unnamed protein pro... [more]
ONK71237.11.8e-3960.57uncharacterized protein A4U43_C04F6300 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
P410999.7e-2557.8960S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1[more]
P462526.3e-2464.8660S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3[more]
Q9SLF75.3e-2362.3960S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ... [more]
P514072.0e-2261.4760S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ... [more]
O244153.5e-2255.7560S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5J9WB451.4e-4756.78Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_04588 PE=3 SV=1[more]
B9FPV29.4e-4756.22Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18721 PE... [more]
A0A5S9X1S01.3e-4045.14(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC... [more]
A0A5P1F1E78.5e-4060.57Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F6300 PE=3 ... [more]
A0A1S4E3U53.6e-3879.8260S acidic ribosomal protein P2-like OS=Cucumis melo OX=3656 GN=LOC103500881 PE=... [more]
Match NameE-valueIdentityDescription
AT2G27710.13.8e-2462.3960S acidic ribosomal protein family [more]
AT2G27710.23.8e-2462.3960S acidic ribosomal protein family [more]
AT2G27710.33.8e-2462.3960S acidic ribosomal protein family [more]
AT2G27720.11.4e-2361.4760S acidic ribosomal protein family [more]
AT3G44590.25.5e-2355.3660S acidic ribosomal protein family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038716Ribosomal protein P1/P2, N-terminal domainGENE3D1.10.10.1410coord: 1..60
e-value: 2.5E-21
score: 77.6
coord: 108..164
e-value: 8.0E-22
score: 79.2
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 124..218
e-value: 1.9E-17
score: 63.6
coord: 18..108
e-value: 4.8E-11
score: 43.1
NoneNo IPR availablePANTHERPTHR21141:SF9460S ACIDIC RIBOSOMAL PROTEIN P2-1coord: 109..219
NoneNo IPR availablePANTHERPTHR21141:SF9460S ACIDIC RIBOSOMAL PROTEIN P2-1coord: 1..108
IPR044076Ribosomal protein P2PANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..108
IPR044076Ribosomal protein P2PANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 109..219
IPR044076Ribosomal protein P2CDDcd05833Ribosomal_P2coord: 109..172
e-value: 8.34429E-25
score: 92.3264
IPR044076Ribosomal protein P2CDDcd05833Ribosomal_P2coord: 1..73
e-value: 8.78155E-28
score: 99.6452
IPR027534Ribosomal protein L12/P1/P2 familyHAMAPMF_01478Ribosomal_L12_archcoord: 108..219
score: 13.63191
IPR027534Ribosomal protein L12/P1/P2 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..116
score: 12.380617

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G075840.1CaUC04G075840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002182 cytoplasmic translational elongation
biological_process GO:0006414 translational elongation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome