CaUC04G075550 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G075550
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Beta-galactosidase
Location	Ciama_Chr04: 24749056 .. 24750918 (-)
RNA-Seq Expression	CaUC04G075550
Synteny	CaUC04G075550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATGAGGGGGTAGTTGATGGAAGTGTTATCACTGCCAATGCACTTCTTGATAAAAAGTTGCCACAAATGATTCCGGTGATTACTTGTGGTATCTCACAGGGTAAGTTTCACTTTTAATTATCTCCTAACTATAATCATAATCATAATAATTACTCCTACAGGTCTGGAGTCATTACGTAATTGGTATAATAAATCTAGTGCCGAAAAGGGATGGGTAGGTCTCAAACCTCGTCGAAAAGGCCGAGACGCTACTACCAGAGGGCTTCGTCGCGTGGGGCTTTGCTATCGACACTAGTGCACGCCAAGAAGCAAGATCCGTGGGTCGGTTTGTTGCTACAGGTCGCCGGTTTGCCGCTCGTGGGTCGTGCACAACGTGGAAGCTACTGCCGCTGCTCGTCCGGCCGTGGTTGCCGCTCGTTTGACTGTGGGTCGTGGGTGCTGGCCGAATGGAAGGGAGATGCAGAGAGGGAAGGGGCAAGCGTGTGTCAGGGGAGGAGGAGAGAGAGAGAGAGAAAAGAGAAAGAAGGGAGGCTTAGTTTTTTTTTTTTTTATTTATTTTTATTTTTATTTATTTTTACTTTTTGTGTGGTTCTTTGCCCATTTTCTTCTTCTCTTTTAAAAGCAAACCGCCATAAATAAAAGAGAAGTGAATTAATTTTTAGGATTTTTATTCAATTTCATAGAAGTTTCTTTTTAAAAATAACAACTCAATAAAGATTTATTTGATAGCAATAATTCATAATAGTAATAATAATAAACTATAAAAACTAATTCTCTTCCTTTCTCTTTTCAACACTTACTGACGTTCAATTTAATTAAACTTAGAAGGCTAACTTGAAATTCAAATGTTACAACCTAACATCGATGATAGAGGAGTCCATTAATTTAAAAAGTTAACAAGTCGAAAGAGATGTATTGACAAGGTTCACACCAAAATTAGCCTTATTTTAGCGCGGGCATTACATTAAATTTCCTATATTTTTCCCCCTTACTTATGAAAACCTATATTCTGCAACAATCCACCGAAATTAATTCTAAAAATTTTGTTTGGTACAAACCACTTTCCCAACTCCCAAAGGATGTGAAGAAGTGGTGGTGGATTTACTTGGCATGGGAAAGGGGCATGCTTGGGTAAATGGAAAAAGCATTGGAAGGTACTGGCCAAGTTATCTAGCAAATGAAAATGGCTGCTCTTCAAATTGTGACTTCCTTGGGGCTTACTACGATAGCAAGTGTGTTATTAATTGTGGAAAGCCTACTCAAAAATCGTATGTTTTCAAGTTTTTGGGCATAGAACTTAACTTGTACAATATGAATGTTTCAAGTGTTTTAAGTGAAAAGAAATTAATGATTGTTTGAAAATCACATAAGTACCACATTCCAAGATCGTACCTGAATAAAGGCTAAGAAAACAAACTGATTTTGTTCCAAGAGTTTCGTGTGGTGCCATTGGATATAGATATCCAGACAACAAGAGTGAAAACAGTGTGTGCAAAGCCTTATGCAGGAAGCACATTGGAGCTATCATGCCATGATTGAATCATCACCGACATCAATTTTGTGAGCTTTGGGAACCTTCGTGGCACTTGTGACAATTTCCAGAAGGGTACCTGTGATTCCTCCACTGCCTTCTCAGTCATTGAAAAGGTAAAACTTCTTTCTGTTAAATGGATAAAGAGAATGGATATGGCACTCTTTGTGGGTATTTAATTTTGTGAGTTTTTGATGGTTTGTTTTCTTTTGGATTGCAGGCATGTCTTGGAAAAAAGGAAATGTTCCATTGAAGTTACAAAAAGTAATCTTGGACAAACTGGTTGCAAGAAACATAATCGGCTTGCAGTTCAAGTCACTTGTTAG

mRNA sequence

ATGACAAATGAGGGGGTAGTTGATGGAAGTGTTATCACTGCCAATGCACTTCTTGATAAAAAGTTGCCACAAATGATTCCGGTGATTACTTGTGGTATCTCACAGGGATGTGAAGAAGTGGTGGTGGATTTACTTGGCATGGGAAAGGGGCATGCTTGGGTAAATGGAAAAAGCATTGGAAGAAGGGTACCTGTGATTCCTCCACTGCCTTCTCAGTCATTGAAAAGGCATGTCTTGGAAAAAAGGAAATGTTCCATTGAAGTTACAAAAAGTAATCTTGGACAAACTGGTTGCAAGAAACATAATCGGCTTGCAGTTCAAGTCACTTGTTAG

Coding sequence (CDS)

ATGACAAATGAGGGGGTAGTTGATGGAAGTGTTATCACTGCCAATGCACTTCTTGATAAAAAGTTGCCACAAATGATTCCGGTGATTACTTGTGGTATCTCACAGGGATGTGAAGAAGTGGTGGTGGATTTACTTGGCATGGGAAAGGGGCATGCTTGGGTAAATGGAAAAAGCATTGGAAGAAGGGTACCTGTGATTCCTCCACTGCCTTCTCAGTCATTGAAAAGGCATGTCTTGGAAAAAAGGAAATGTTCCATTGAAGTTACAAAAAGTAATCTTGGACAAACTGGTTGCAAGAAACATAATCGGCTTGCAGTTCAAGTCACTTGTTAG

Protein sequence

MTNEGVVDGSVITANALLDKKLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGRRVPVIPPLPSQSLKRHVLEKRKCSIEVTKSNLGQTGCKKHNRLAVQVTC

Homology

[Close]

BLAST of CaUC04G075550 vs. NCBI nr
Match: XP_016902878.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 74  LKRHVLEKRKCSIEVTKSNLGQTGCKKHNRLAVQVTC 111
           +++  L KRKCSIEVTKSNLG TGCKKHNRLAVQVTC
Sbjct: 676 IEKACLGKRKCSIEVTKSNLGNTGCKKHNRLAVQVTC 712

[Close]

BLAST of CaUC04G075550 vs. NCBI nr
Match: XP_016902878.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-03
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 38  EEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 525 EGVVVDLLGMGKGHAWVNGKSIGRYWP 551

HSP 2 Score: 65.1 bits (157), Expect = 4.4e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 74  LKRHVLEKRKCSIEVTKSNLGQTGCKKHNRLAVQVTC 111
           +++  L KRKCSIEVTKSNLG TGCKKHNRLAVQVTC
Sbjct: 397 IEKACLGKRKCSIEVTKSNLGNTGCKKHNRLAVQVTC 433

[Close]

BLAST of CaUC04G075550 vs. NCBI nr
Match: KAA0025304.1 (beta-galactosidase-like [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-03
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 38  EEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 246 EGVVVDLLGMGKGHAWVNGKSIGRYWP 272

HSP 2 Score: 65.1 bits (157), Expect = 4.4e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 74  LKRHVLEKRKCSIEVTKSNLGQTGCKKHNRLAVQVTC 111
           +++  L KRKCSIEVTKSNLGQTGCKKHNRLAVQV C
Sbjct: 790 IEKACLGKRKCSIEVTKSNLGQTGCKKHNRLAVQVAC 826

[Close]

BLAST of CaUC04G075550 vs. NCBI nr
Match: XP_038882297.1 (beta-galactosidase 15-like [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 35  QGCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           +G E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 636 KGREGVVVDLLGMGKGHAWVNGKSIGRYWP 665

HSP 2 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 21  KLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           ++P   P+     + G E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 359 QVPTGRPMFWYKAAMGTEPVVVDLLGMGKGHAWVNGKSIGRYWP 402

[Close]

BLAST of CaUC04G075550 vs. NCBI nr
Match: MBA0597667.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 21  KLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           ++P   P+     + G E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 220 QVPTGRPMFWYKAAMGTEPVVVDLLGMGKGHAWVNGKSIGRYWP 263

[Close]

BLAST of CaUC04G075550 vs. ExPASy Swiss-Prot
Match: Q9C6W4 (Beta-galactosidase 15 OS=Arabidopsis thaliana OX=3702 GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 36  GCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           G E VVVDLLG+GKG AW+NG +IGR  P
Sbjct: 611 GSEPVVVDLLGLGKGTAWINGNNIGRYWP 639

[Close]

BLAST of CaUC04G075550 vs. ExPASy Swiss-Prot
Match: Q9SCV4 (Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 26/63 (41.27%), Postives = 31/63 (49.21%), Query Frame = 0


Query: 2   TNEGVVDGSVITANALLDKKLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGR 61
           T    VD S   + + L  K P +    T     G E V +D  G GKG AWVNG+SIGR
Sbjct: 605 TGLATVDSSEWVSKSPLPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGR 664

Query: 62  RVP 65
             P
Sbjct: 665 YWP 667

[Close]

BLAST of CaUC04G075550 vs. ExPASy Swiss-Prot
Match: Q9SCV5 (Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 8.0e-04
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 36  GCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           G E V+VDL G+GKG AW+NG+SIGR  P
Sbjct: 634 GKEPVIVDLNGLGKGEAWINGQSIGRYWP 662

[Close]

BLAST of CaUC04G075550 vs. ExPASy TrEMBL
Match: A0A5A7SI46 (Beta-galactosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001590 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 74  LKRHVLEKRKCSIEVTKSNLGQTGCKKHNRLAVQVTC 111
           +++  L KRKCSIEVTKSNLG TGCKKHNRLAVQVTC
Sbjct: 397 IEKACLGKRKCSIEVTKSNLGNTGCKKHNRLAVQVTC 433

[Close]

BLAST of CaUC04G075550 vs. ExPASy TrEMBL
Match: A0A5A7SI46 (Beta-galactosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001590 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-03
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 38  EEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 246 EGVVVDLLGMGKGHAWVNGKSIGRYWP 272

HSP 2 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 74  LKRHVLEKRKCSIEVTKSNLGQTGCKKHNRLAVQVTC 111
           +++  L KRKCSIEVTKSNLG TGCKKHNRLAVQVTC
Sbjct: 676 IEKACLGKRKCSIEVTKSNLGNTGCKKHNRLAVQVTC 712

[Close]

BLAST of CaUC04G075550 vs. ExPASy TrEMBL
Match: A0A1S4E3S3 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103500969 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-03
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 38  EEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 525 EGVVVDLLGMGKGHAWVNGKSIGRYWP 551

HSP 2 Score: 56.2 bits (134), Expect = 9.8e-05
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 21  KLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           ++P   P+     + G E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 220 QVPTGRPMFWYKAAMGTEPVVVDLLGMGKGHAWVNGKSIGRYWP 263

[Close]

BLAST of CaUC04G075550 vs. ExPASy TrEMBL
Match: A0A7J9EY26 (Beta-galactosidase OS=Gossypium trilobum OX=34281 GN=Gotri_005607 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-05
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 21  KLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           ++P   P+     + G E VVVDLLGMGKGHAWVNGKSIGR  P
Sbjct: 359 QVPTGRPMFWYKAAMGTEPVVVDLLGMGKGHAWVNGKSIGRYWP 402

[Close]

BLAST of CaUC04G075550 vs. ExPASy TrEMBL
Match: A0A0B2R0W3 (Beta-galactosidase OS=Glycine soja OX=3848 GN=glysoja_044381 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 35  QGCEEVVVDLLGMGKGHAWVNGKSIG------------RRVPVIPPLPSQSLKRHVLEKR 94
           +G + VVVDL G+ KG AWVNG +IG            ++     P     L +  L K+
Sbjct: 436 KGTDPVVVDLRGLKKGQAWVNGNNIGSFGVPEGECGSFKKSQCESPNALSILSKSCLGKQ 495

Query: 95  KCSIEVTKSNLGQTGCK---KHNRLAVQVTC 111
            CS++V++  LG T C+     N+LA++  C
Sbjct: 496 SCSVQVSQRMLGPTRCRVPQNQNKLAIEAVC 526

[Close]

BLAST of CaUC04G075550 vs. TAIR 10
Match: AT1G31740.1 (beta-galactosidase 15 )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 36  GCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           G E VVVDLLG+GKG AW+NG +IGR  P
Sbjct: 634 GSEPVVVDLLGLGKGTAWINGNNIGRYWP 662

[Close]

BLAST of CaUC04G075550 vs. TAIR 10
Match: AT2G28470.1 (beta-galactosidase 8 )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 26/63 (41.27%), Postives = 31/63 (49.21%), Query Frame = 0


Query: 2   TNEGVVDGSVITANALLDKKLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGR 61
           T    VD S   + + L  K P +    T     G E V +D  G GKG AWVNG+SIGR
Sbjct: 605 TGLATVDSSEWVSKSPLPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGR 664

Query: 62  RVP 65
             P
Sbjct: 665 YWP 667

[Close]

BLAST of CaUC04G075550 vs. TAIR 10
Match: AT2G28470.2 (beta-galactosidase 8 )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 26/63 (41.27%), Postives = 31/63 (49.21%), Query Frame = 0


Query: 2   TNEGVVDGSVITANALLDKKLPQMIPVITCGISQGCEEVVVDLLGMGKGHAWVNGKSIGR 61
           T    VD S   + + L  K P +    T     G E V +D  G GKG AWVNG+SIGR
Sbjct: 599 TGLATVDSSEWVSKSPLPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGR 658

Query: 62  RVP 65
             P
Sbjct: 659 YWP 661

[Close]

BLAST of CaUC04G075550 vs. TAIR 10
Match: AT5G20710.1 (beta-galactosidase 7 )

HSP 1 Score: 44.7 bits (104), Expect = 5.7e-05
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 36  GCEEVVVDLLGMGKGHAWVNGKSIGRRVP 65
           G E V+VDL G+GKG AW+NG+SIGR  P
Sbjct: 634 GKEPVIVDLNGLGKGEAWINGQSIGRYWP 662

The following BLAST results are available for this feature:

BLAST of CaUC04G075550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902878.1	4.4e-07	81.08	PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]	[more]
XP_016902878.1	2.9e-03	88.89	PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]	[more]
KAA0025304.1	2.9e-03	88.89	beta-galactosidase-like [Cucumis melo var. makuwa]	[more]
XP_038882297.1	7.7e-04	83.33	beta-galactosidase 15-like [Benincasa hispida]	[more]
MBA0597667.1	2.0e-04	61.36	hypothetical protein [Gossypium raimondii]	[more]

BLAST of CaUC04G075550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6W4	2.8e-04	68.97	Beta-galactosidase 15 OS=Arabidopsis thaliana OX=3702 GN=BGAL15 PE=2 SV=1	[more]
Q9SCV4	2.8e-04	41.27	Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2	[more]
Q9SCV5	8.0e-04	65.52	Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2	[more]

BLAST of CaUC04G075550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SI46	2.1e-07	81.08	Beta-galactosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SI46	1.4e-03	88.89	Beta-galactosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E3S3	1.4e-03	88.89	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103500969 PE=3 SV=1	[more]
A0A7J9EY26	9.8e-05	61.36	Beta-galactosidase OS=Gossypium trilobum OX=34281 GN=Gotri_005607 PE=3 SV=1	[more]
A0A0B2R0W3	2.2e-04	34.07	Beta-galactosidase OS=Glycine soja OX=3848 GN=glysoja_044381 PE=3 SV=1	[more]

BLAST of CaUC04G075550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31740.1	2.0e-05	68.97	beta-galactosidase 15	[more]
AT2G28470.1	2.0e-05	41.27	beta-galactosidase 8	[more]
AT2G28470.2	2.0e-05	41.27	beta-galactosidase 8	[more]
AT5G20710.1	5.7e-05	65.52	beta-galactosidase 7	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.260		coord: 14..110 e-value: 3.6E-6 score: 29.1
IPR008979	Galactose-binding-like domain superfamily	SUPERFAMILY	49785	Galactose-binding domain-like	coord: 39..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G075550.1	CaUC04G075550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0048046	apoplast
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding