CaUC04G075120 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G075120
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNA polymerase sigma factor
Location	Ciama_Chr04: 24230485 .. 24235316 (+)
RNA-Seq Expression	CaUC04G075120
Synteny	CaUC04G075120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCGAGATGCCACCCCAGAAGCTTCCTTCCTCCTTCTTGTTCTTCTTCTTCCTCCTCCTCCTCTTCTTCAGGTAGTATTTGTAGTTTGAAATTTAGCTTAAATGTGAAACTCAGAATGTTCCATTTTAAACATTTCGAGTTGGATTTGCCTTATTTGGATTTTATATCGCTTCAAATGGCAATTTCTTGTTCGAACTGTGTGATGATTATATGAATGATTTGTCTATGTCGAATGGTGCCCATTAGCGTAATGTAGGATTCTAGAATCAGTTATCAGAAATGAGGACTCATTGTGCTTGGCTTGTTAACTCATTCCTTTAACCTTTCTAGAGTGAGTTACTTTTAGGAGAAGCTTTGTTGGTTTTTCCTAGAAGGATTCAAAGTGCTTTTTAATTACTTTTGAACTTCTGAGTATGTAATTAAACACCATAAAAATTTGAAGATTACTTTTTAATTGGCAAAAAGCTTACAAGAGTCCTGGAAATGCTGATCATTAATCAATGCTGATCTTTAATTAGTTTTCTACAATTACATACACGTGTATCTAGAGATGCTTCATCCACTCAGGTAAATGTTTGTTATGAATCCTGCAGTTTCTATGTTTCATGAGCAAGCGACTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCAGAAATACTTAAGGATGATAGAACATCCCAGGTTAGAATTCTCTAAACTTATGCATTTAAATCGGATTATTTTGTTGTACACAGAACTATATTAGCATTGTGTGGTTTTCTTAGTGACATGAAATTCTCTCTTTGTGCATTGACTTATTTTTGTGAATGCTTGTATGGATTTTTAGAACGTACACTCCTTTATTGTTCTAACAAAAGTGTATAATGTCTTAGTTAGCGCCTCTTTGGAATAACTTTTAATGTGCTAAAAAAAGTGCTTTTAAGTACATAGTAAGTCGTTCTAAACATGTCCTTAATTTCACCGAGCATACTCTGACTGACAGTTCCTATGTCTTTTTTGGGATAACACTCCTTTATTGTTTTAAGTTTTAACAACGCTATTGTGATTTGTCTGTTAAAATGTGTAAAGTCTTTTTCACTGAGCATACTCTGAGTAGTCCTATTTCTGCAGTAATGTCTGCATGCATGTTTTTCCAGTTTCCATTTGTACTCATGCTCTATCTCTCACTCCCTTTCATAAGCACTCACAAAGATACATAGTTAAGTATTTATATTATTATAGGTATCTGTGTGTGCACACCTGCATTTGGGAATTCTAATTAATGGTTCATTTGATGCCCATTGTGAAGATGACTCTAGATAGGAGGCTGATCGAGAGGAGTGTTTCAATTGATGAAAGCAGCCGAAGTGACCATGATCATTTGGTCTGGGAACTTAAGCATCAAGCGGTTGAGTGGCCTGGTTTATTATCATCGTAAGATGAACTAAACTTCCTTCTCCTGACCAGTTTTTATCAATACACAGATTTCAATCCTTATCTGTATCCTTTCTTTCGTATTGAGTAAATACAATTATTTTGCAGATGGCCATCCTTACAAATGGAGGAATATAAGATCTCATCAGTTGAAAAACAATCCTATAACGCTGGTGGGGAGATGCTTGTAAAAGATGAACCAGAGAATGTCATTGCCCTTGCAAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATTATTGGTTGACGAGTCCGAATTAGTTGGTACTAATCTGGACTATACTTCTCCTGATGAGTAAGTTAAACTTTTCTAATCTTATGTGCACAATTTATGATAGCCACATTTGGTACTAATGTACTATGGTTTCATTGCACCTATATAGTCTTGCTCATATTGGGATATATTCATTGATTAGTTCTCTGAGCAAGGAGGGGAGAACTGTAAAGTCAACCAGACTACAAGATAGACGATCTAAGAAGAGAAAGAAGCCAAAACATGTAACAACTATTCATGAGACTTCTAATTCGAGGGGGAAAGATTCACGAAGAAAAACAAGTGAAAATTTTGATCCTAATGATCCACTACGACTATTCTTATGGGGTCCTGAAACAAAGAAGCTTTTAACAGCTCAAGAAGAGTCTGAGTTGATAGTCCAAATCCAAGTATGCTTGTGAAGGCTATCTATTTTCAGTTTTCAGTTTCCATACGTCTTCTATTCATTAGCATTGTTGTACATGCTTGATAAAGTAACCTTTTAACAGGATTTAATGATACTGGAGAACGTGAAAGCTAGACTTCAATCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCTGAAGCTCTAGGGCTTACTTGTCAACGCTTACAGTCACAGCTTCACTCCTTTCGGATCAGTCGTGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCCAAACAATATCAGGGTCGTGGTCTCAGCCTTCACGACTTATTGCAGGTTATGCTCTGATTATGAGGCATGCATCTGTGGTGCAAGGCCTTTACACTCTTCCTTTTCAGTCAGTAGATGAGTTCAATTGAAAAAGGTTGTAGGCCACTGGACACACGCATACTGAGCAGAGTGCTAGACATGTATTTTTCAAACCTTCTGCTTCAGGCACTGCTTAAATTAGACTTTTTTTGTGTTCTTGTTGGTTTCAGAAATCCTGGCTTTTCTCGTTTATCCCTCCATCTGTCTGCCCATCGATCCTATATATATGCCATGGCATAATTGTTAGTATATGGTGAACAGATTTTAAATTATTTATCTAATTATATCTTGGAAAAAAAAAAGTAAGATCTGATTTAGGCAATGAATATGGCGATCTACATGGTCTAATTTCAAGTCTTGAATATCTATGTAAAGGCTTATTCATGTGGGTTATTGCCCAAACTTGAGTGTCATGCACTGATGACTACAAGTTCTGTTATACAAACTCATTATCCTCCACATTACTCATATTACTCTCCCCAATCTTCCTGGTAAAATTATTCCTTCTATTGTATAGCTGAGAGCATTATATGAGGTCCTGCTCTGCACAGGAATTATACAAATCACGTAATATTGAGCTATTTGAGTTAAGAGACTGATTCAGGGTTCAAGATTTTTTTTCAACGCCTATATTTACTATTTGGAATAGGATCCTCTATCTAATATGTTGAGATACGTGAATGGGCTACTGAAATTTCCTGGTTCACTTTTTATATTGTCTTAGGAAGGAAGCTTGGGACTTATGAAGAGTGTAGAAAAATTCAAACCACAAGCTGGTTGCCGCTTTGCCACATATGCTTATTGGTGGATTAGGCAATCAATTAGGAAGGCGATATTCGAACACTCAAGAACAATTCGTTTACCGGTAATGACAGTTCTTTGGTCTTTAGGTTCATCCTTGAAGAAATATGAAGATTAAATTTCCTTGTTCAGTTAACTCTCTCCTTTTCTCTTTTATTATTATGTCTTTTCCTATATATATGGTTAGCTGATTTACTTACGAAGTTAACAAGTAGAAAAAATCGCATTATAATTTGCAGGAAAATGTATATGGCCTCCTCGGAAAGGTGACAGAGGCAAAGAATTACTTTGTTCGAGCAGGGAATTATAAACCATCTAAAGAAGAGTTAGCTGCACGTGCTGGAATTACAGTGGAGAGATTGGATAAGTTACTGTTTATGTCGAGAATACCACGTTCATTGCAGCAATGTGTATGGGCTGACCAAGATACCACTTTTCAGGTATCTATCACTTCTTCTCTTGACTTTTAACCAATAAAATAGGACAGAAAATTCAACAAAGATAGGGTATTACTTTAAACATACTGCTTACTGAAAGTAAGATTTTAGATTACCTTCTATAAAGCTTGCAAGTCTGGTACTACTTTATTGCAAAATTTGTTAAATGCTGGGTTACCAATGAAATTCACTTTTTAACGGTAATTATCGACAAGGAAGCTGTTTTAAATGTATAAGAGAATAATGATGTCAGAGATAGAGATCACAGGGATGTGTACCCATTATTGAAAAATCCATCTTGCTAAGTTCCATTTTTCTGTTGCCCAAGCGTTGGTGTTAGTTTATCACTGGATAATGATTATAAGTTGCTTTGCTTGTATCATTTGAAGACATATTTTAGAACTGGTTGCTACCATTTAATAATGAAATCACAGAAAATGCATAGATACATTCATGATTTTATTGGGCGCGTTAGTTACAGTGAGCCAATCCATATAGGCGTTATGATAGATTCACTCTAACATCATGCTAACACCTCTCTACCATAATCTGAGAATGCATTCTGAATTACATTACAGGAAATAACTGCAGACTCTGAAGTTGACACCCCAGACGTCAGTGTGGAAAGGGAGCTTATGCGAAGGCATATTCGGAATCTCCTTAACATTCTCAGTCCGAAAGAGAGACGGATAATCAGACTACGATTCGGTATCGAAGATGGTAAAGAGAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAAGAGAGAGTACGACAGCTTGAAAACCGAGCCTTATACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGGTGCATATGCCGATATACTGACTTGAGATCGCATGGCCAATGCATTTTGTTTTATATGTATCAACTTGGTCTGAACATTGCACCTTCCGTATATCAGAAGCTGTAGTTTTAGGATGTTGGAAGGTCTCTTTCAAGAATTCTGCAGGATATAAACAATACTTTTTGTAAGTCCAACAGCTATGTATTGTATGTATATGAAGGTCATTTGTATTCTTTT

mRNA sequence

ATGGAGGCCGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCGAGATGCCACCCCAGAAGCTTCCTTCCTCCTTCTTGTTCTTCTTCTTCCTCCTCCTCCTCTTCTTCAGTTTCTATGTTTCATGAGCAAGCGACTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCAGAAATACTTAAGGATGATAGAACATCCCAGATGACTCTAGATAGGAGGCTGATCGAGAGGAGTGTTTCAATTGATGAAAGCAGCCGAAGTGACCATGATCATTTGGTCTGGGAACTTAAGCATCAAGCGGTTGAGTGGCCTGGTTTATTATCATCATGGCCATCCTTACAAATGGAGGAATATAAGATCTCATCAGTTGAAAAACAATCCTATAACGCTGGTGGGGAGATGCTTGTAAAAGATGAACCAGAGAATGTCATTGCCCTTGCAAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATTATTGGTTGACGAGTCCGAATTAGTTGGTACTAATCTGGACTATACTTCTCCTGATGATCTTGCTCATATTGGGATATATTCATTGATTAGTTCTCTGAGCAAGGAGGGGAGAACTGTAAAGTCAACCAGACTACAAGATAGACGATCTAAGAAGAGAAAGAAGCCAAAACATGTAACAACTATTCATGAGACTTCTAATTCGAGGGGGAAAGATTCACGAAGAAAAACAAGTGAAAATTTTGATCCTAATGATCCACTACGACTATTCTTATGGGGTCCTGAAACAAAGAAGCTTTTAACAGCTCAAGAAGAGTCTGAGTTGATAGTCCAAATCCAAGATTTAATGATACTGGAGAACGTGAAAGCTAGACTTCAATCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCTGAAGCTCTAGGGCTTACTTGTCAACGCTTACAGTCACAGCTTCACTCCTTTCGGATCAGTCGTGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCCAAACAATATCAGGGTCGTGGTCTCAGCCTTCACGACTTATTGCAGGAAGGAAGCTTGGGACTTATGAAGAGTGTAGAAAAATTCAAACCACAAGCTGGTTGCCGCTTTGCCACATATGCTTATTGGTGGATTAGGCAATCAATTAGGAAGGCGATATTCGAACACTCAAGAACAATTCGTTTACCGGAAAATGTATATGGCCTCCTCGGAAAGGTGACAGAGGCAAAGAATTACTTTGTTCGAGCAGGGAATTATAAACCATCTAAAGAAGAGTTAGCTGCACGTGCTGGAATTACAGTGGAGAGATTGGATAAGTTACTGTTTATGTCGAGAATACCACGTTCATTGCAGCAATGTGTATGGGCTGACCAAGATACCACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGACACCCCAGACGTCAGTGTGGAAAGGGAGCTTATGCGAAGGCATATTCGGAATCTCCTTAACATTCTCAGTCCGAAAGAGAGACGGATAATCAGACTACGATTCGGTATCGAAGATGGTAAAGAGAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAAGAGAGAGTACGACAGCTTGAAAACCGAGCCTTATACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGGTGCATATGCCGATATACTGACTTGAGATCGCATGGCCAATGCATTTTGTTTTATATGTATCAACTTGGTCTGAACATTGCACCTTCCGTATATCAGAAGCTGTAGTTTTAGGATGTTGGAAGGTCTCTTTCAAGAATTCTGCAGGATATAAACAATACTTTTTGTAAGTCCAACAGCTATGTATTGTATGTATATGAAGGTCATTTGTATTCTTTT

Coding sequence (CDS)

ATGGAGGCCGGACTCAATTTGCTCTCTTCTTCATCGCCCTTCATTTCGAGATGCCACCCCAGAAGCTTCCTTCCTCCTTCTTGTTCTTCTTCTTCCTCCTCCTCCTCTTCTTCAGTTTCTATGTTTCATGAGCAAGCGACTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCAGAAATACTTAAGGATGATAGAACATCCCAGATGACTCTAGATAGGAGGCTGATCGAGAGGAGTGTTTCAATTGATGAAAGCAGCCGAAGTGACCATGATCATTTGGTCTGGGAACTTAAGCATCAAGCGGTTGAGTGGCCTGGTTTATTATCATCATGGCCATCCTTACAAATGGAGGAATATAAGATCTCATCAGTTGAAAAACAATCCTATAACGCTGGTGGGGAGATGCTTGTAAAAGATGAACCAGAGAATGTCATTGCCCTTGCAAAGAAAGCTTTGTCAGCTTCAAAACAAGCAGCATTATTGGTTGACGAGTCCGAATTAGTTGGTACTAATCTGGACTATACTTCTCCTGATGATCTTGCTCATATTGGGATATATTCATTGATTAGTTCTCTGAGCAAGGAGGGGAGAACTGTAAAGTCAACCAGACTACAAGATAGACGATCTAAGAAGAGAAAGAAGCCAAAACATGTAACAACTATTCATGAGACTTCTAATTCGAGGGGGAAAGATTCACGAAGAAAAACAAGTGAAAATTTTGATCCTAATGATCCACTACGACTATTCTTATGGGGTCCTGAAACAAAGAAGCTTTTAACAGCTCAAGAAGAGTCTGAGTTGATAGTCCAAATCCAAGATTTAATGATACTGGAGAACGTGAAAGCTAGACTTCAATCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCTGAAGCTCTAGGGCTTACTTGTCAACGCTTACAGTCACAGCTTCACTCCTTTCGGATCAGTCGTGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCCAAACAATATCAGGGTCGTGGTCTCAGCCTTCACGACTTATTGCAGGAAGGAAGCTTGGGACTTATGAAGAGTGTAGAAAAATTCAAACCACAAGCTGGTTGCCGCTTTGCCACATATGCTTATTGGTGGATTAGGCAATCAATTAGGAAGGCGATATTCGAACACTCAAGAACAATTCGTTTACCGGAAAATGTATATGGCCTCCTCGGAAAGGTGACAGAGGCAAAGAATTACTTTGTTCGAGCAGGGAATTATAAACCATCTAAAGAAGAGTTAGCTGCACGTGCTGGAATTACAGTGGAGAGATTGGATAAGTTACTGTTTATGTCGAGAATACCACGTTCATTGCAGCAATGTGTATGGGCTGACCAAGATACCACTTTTCAGGAAATAACTGCAGACTCTGAAGTTGACACCCCAGACGTCAGTGTGGAAAGGGAGCTTATGCGAAGGCATATTCGGAATCTCCTTAACATTCTCAGTCCGAAAGAGAGACGGATAATCAGACTACGATTCGGTATCGAAGATGGTAAAGAGAAGACACTGTTGGAAATTGGCAACATGTTTGGTTTGTCCAAAGAGAGAGTACGACAGCTTGAAAACCGAGCCTTATACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGGTGCATATGCCGATATACTGACTTGA

Protein sequence

MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT

Homology

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BLAST of CaUC04G075120 vs. NCBI nr
Match: XP_038882876.1 (RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida])

HSP 1 Score: 1012.7 bits (2617), Expect = 1.3e-291
Identity = 530/569 (93.15%), Postives = 540/569 (94.90%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATPARYFSTSFLSQE 60
           MEAGLNLLSSSS FISRCHPRSFL PSC  SSSSSSSSVSMFHEQA PARYFSTSFLSQE
Sbjct: 1   MEAGLNLLSSSSLFISRCHPRSFLHPSC--SSSSSSSSVSMFHEQAIPARYFSTSFLSQE 60

Query: 61  QHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDHDHLVWELKHQAVEWPGLLS 120
           QHHECRPQS+ILKDDRTSQ TLDRRLIERSVSIDE +RSDHDHL+WE KHQAVEWPGLLS
Sbjct: 61  QHHECRPQSQILKDDRTSQTTLDRRLIERSVSIDEGNRSDHDHLIWEFKHQAVEWPGLLS 120

Query: 121 SWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALLVDESELVG 180
           SWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAA LVDESELVG
Sbjct: 121 SWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAASLVDESELVG 180

Query: 181 TNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETSNSRG 240
           TNLDYTSPDD           SLSKEGRTV+STRLQDRRSKKRK PKHVTTIHETSNS+G
Sbjct: 181 TNLDYTSPDD-----------SLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIHETSNSKG 240

Query: 241 KDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQSQFG 300
           KDSRRKT ENFDPNDPLRLFLWGPETKKLLT +EESELIVQIQDLMIL+NVKARLQSQFG
Sbjct: 241 KDSRRKTIENFDPNDPLRLFLWGPETKKLLTVEEESELIVQIQDLMILDNVKARLQSQFG 300

Query: 301 REPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQ 360
           REPTLVEWAEALGLTCQRLQSQL SFRISREKLINANLRMVVHIAKQYQGRGLSL DLLQ
Sbjct: 301 REPTLVEWAEALGLTCQRLQSQLQSFRISREKLINANLRMVVHIAKQYQGRGLSLQDLLQ 360

Query: 361 EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA 420
           EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
Sbjct: 361 EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA 420

Query: 421 KNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADS 480
           KNYFVRAGNYKPSKEELAAR GITVERLDKLLFMSRIPRSLQQ VW DQDTTFQEITADS
Sbjct: 421 KNYFVRAGNYKPSKEELAARVGITVERLDKLLFMSRIPRSLQQPVWTDQDTTFQEITADS 480

Query: 481 EVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER 540
           E+DTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER
Sbjct: 481 ELDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER 540

Query: 541 VRQLENRALYKLKRCCNSQGLGAYADILT 570
           VRQLENRALYKLKRC NSQGLGAYAD+LT
Sbjct: 541 VRQLENRALYKLKRCSNSQGLGAYADLLT 556

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BLAST of CaUC04G075120 vs. NCBI nr
Match: XP_031742499.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hypothetical protein Csa_003758 [Cucumis sativus])

HSP 1 Score: 977.2 bits (2525), Expect = 5.9e-281
Identity = 510/573 (89.01%), Postives = 532/573 (92.84%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFHEQATPARYFSTSF 60
           MEAGLNLLSSSSPFISRCHPRSFL PSCSS    SSSSSSSSV MF EQA+PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDHDHLVWELKHQAVEWP 120
           LSQEQHHECRPQS+ILKDDR+SQMTL+RRLIERSV IDE SR DHDHL+WELKHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALLVDES 180
           GLLSSWP +QMEEYKISS+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAALLVDE+
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 ELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETS 240
           ELVGT+LDY+S DD           SLSKEGRTV+STRLQDRRSKKRK PKHVTTI E S
Sbjct: 181 ELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEIS 240

Query: 241 NSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQ 300
           N RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMIL+NVKARLQ
Sbjct: 241 NFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQ 300

Query: 301 SQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLH 360
           SQF REPTLVEWAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLH
Sbjct: 301 SQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLH 360

Query: 361 DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGK 420
           DLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGK
Sbjct: 361 DLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGK 420

Query: 421 VTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEI 480
           VTEAKNYFVRAGNYKPSKEELAAR GITVER DKL+FMSRIPRSLQQ VWADQ+TTFQEI
Sbjct: 421 VTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEI 480

Query: 481 TADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL 540
           TADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGL
Sbjct: 481 TADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGL 540

Query: 541 SKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           SKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 541 SKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562

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BLAST of CaUC04G075120 vs. NCBI nr
Match: XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 934.5 bits (2414), Expect = 4.4e-268
Identity = 482/531 (90.77%), Postives = 500/531 (94.16%), Query Frame = 0


Query: 39  VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSR 98
           V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 99  SDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIAL 158
           SDHDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 159 AKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDR 218
           AKKALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQDR
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQDR 493

Query: 219 RSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESEL 278
           RSKKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+L
Sbjct: 494 RSKKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDL 553

Query: 279 IVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL 338
           IVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Sbjct: 554 IVQIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANL 613

Query: 339 RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIF 398
           RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF
Sbjct: 614 RMVVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIF 673

Query: 399 EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIP 458
           +HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIP
Sbjct: 674 QHSRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIP 733

Query: 459 RSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFG 518
           RSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFG
Sbjct: 734 RSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 793

Query: 519 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 794 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

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BLAST of CaUC04G075120 vs. NCBI nr
Match: XP_016902885.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 934.5 bits (2414), Expect = 4.4e-268
Identity = 482/531 (90.77%), Postives = 500/531 (94.16%), Query Frame = 0


Query: 39  VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSR 98
           V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371

Query: 99  SDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIAL 158
           SDHDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431

Query: 159 AKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDR 218
           AKKALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQDR
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQDR 491

Query: 219 RSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESEL 278
           RSKKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+L
Sbjct: 492 RSKKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDL 551

Query: 279 IVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL 338
           IVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Sbjct: 552 IVQIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANL 611

Query: 339 RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIF 398
           RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF
Sbjct: 612 RMVVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIF 671

Query: 399 EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIP 458
           +HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIP
Sbjct: 672 QHSRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIP 731

Query: 459 RSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFG 518
           RSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFG
Sbjct: 732 RSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 791

Query: 519 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 792 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of CaUC04G075120 vs. NCBI nr
Match: KAA0063818.1 (RNA polymerase sigma factor sigF [Cucumis melo var. makuwa])

HSP 1 Score: 932.9 bits (2410), Expect = 1.3e-267
Identity = 481/531 (90.58%), Postives = 500/531 (94.16%), Query Frame = 0


Query: 39  VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSR 98
           V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 99  SDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIAL 158
           SDHDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 159 AKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDR 218
           AKKALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQ+R
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQER 493

Query: 219 RSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESEL 278
           RSKKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+L
Sbjct: 494 RSKKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDL 553

Query: 279 IVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL 338
           IVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Sbjct: 554 IVQIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANL 613

Query: 339 RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIF 398
           RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF
Sbjct: 614 RMVVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIF 673

Query: 399 EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIP 458
           +HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIP
Sbjct: 674 QHSRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIP 733

Query: 459 RSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFG 518
           RSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFG
Sbjct: 734 RSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 793

Query: 519 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 794 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CaUC04G075120 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 1.5e-149
Identity = 313/579 (54.06%), Postives = 398/579 (68.74%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATP-----------A 60
           MEA  NL+SSS  F ++ H +         SS SS SSV M H+Q T            +
Sbjct: 1   MEATRNLVSSSPSFQTKTHLK---------SSYSSPSSVVMLHDQTTTPVVNSRHLNSLS 60

Query: 61  RYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDHDHLVWELK 120
           R+F  S LSQE   E RP S  L+DDRTSQ+TL+RR  +  VS  E  + +      +L 
Sbjct: 61  RHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSREDEKFEQ-----QLL 120

Query: 121 HQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQA 180
           H    W  L+S   S    E K+ +V           L   E  +V+ALA+KALSASKQA
Sbjct: 121 HSTGLWNLLISPLTS----ETKLPAVVSP--------LADAELCDVVALAQKALSASKQA 180

Query: 181 ALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHV 240
           ALLVD++E    N      D L+     S   SL ++G  V+S R  +RR+K R+ PK  
Sbjct: 181 ALLVDDTE---ANPSDNIKDSLS----TSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSN 240

Query: 241 TTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILE 300
               E    +   +++K  +  D +D L+LFLWGPETK+LLTA+EE+ELI  IQ L+ LE
Sbjct: 241 DVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLE 300

Query: 301 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQ 360
            VK +L+SQ G EPT+ EWAEA+G++   L+S +H  R SREKLI ANLR+VVHIAKQYQ
Sbjct: 301 KVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQ 360

Query: 361 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 420
            RGL+  DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+IF++SRTIRLPEN
Sbjct: 361 NRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPEN 420

Query: 421 VYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQ 480
           VY LLGKV+EA+   V+ GNY+PSKEELA   G++ E+LDKLL+ +R P S+QQ +W+DQ
Sbjct: 421 VYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQ 480

Query: 481 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLE 540
           DTTFQEIT DS ++TP +SV ++LMR H+RNLLN+LSPKERRII+LRFGI+ GK+++L E
Sbjct: 481 DTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSE 540

Query: 541 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADIL 569
           IG ++GLSKERVRQLE+RALY+LK+  NS GL AYAD+L
Sbjct: 541 IGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of CaUC04G075120 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 1.0e-65
Identity = 137/356 (38.48%), Postives = 215/356 (60.39%), Query Frame = 0


Query: 210 VKSTRLQDRRSKKRK-KPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKK 269
           V+STR  +R++++ K   K  + I           +R  ++  D NDPLR       + K
Sbjct: 212 VRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK 271

Query: 270 LLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRI 329
           LLT +EE EL   IQDL+ LE ++  L  + GR+PT  +WA A G+  + L+ ++H   +
Sbjct: 272 LLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTL 331

Query: 330 SREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWW 389
            ++K+I +N+R+V+ IAK YQG G++L DL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 332 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 391

Query: 390 IRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERL 449
           I+Q++RK++ + SR IRLP ++     +V EA+          P  EE+A   G++++RL
Sbjct: 392 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 451

Query: 450 DKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPK 509
             +L   + PRSL Q +  +Q+    E+ AD E  T +  + +E MR+ +  +L+ L  +
Sbjct: 452 MAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTR 511

Query: 510 ERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY 565
           E+++IR RFG+EDG+ KTL EIG M G+S+ERVRQ+E+ A  KLK    +  L  Y
Sbjct: 512 EKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of CaUC04G075120 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-62
Identity = 128/322 (39.75%), Postives = 209/322 (64.91%), Query Frame = 0


Query: 234 ETSNSRGKDSRRKT--SENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENV 293
           +  + +   SRR+T   +     D +RL+L      +LL A EE EL  +I DL+ LE V
Sbjct: 57  DAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 116

Query: 294 KARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGR 353
           + RL  +  R+P   EWAEA+ L     + +LH  R +++K++ +NLR+VV IAK+Y  R
Sbjct: 117 RERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNR 176

Query: 354 GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVY 413
           GLS  DL+QEGSLGL+++ EKF  + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y
Sbjct: 177 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 236

Query: 414 GLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDT 473
             + ++ +      +    KP++EE+A R  +T+E+L  +   +++P SL+  +  ++D+
Sbjct: 237 ETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 296

Query: 474 TFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIG 533
              +   +S+ +TP+  V + L+R  +  +L+ LSP+ER ++RLR+G++DG+ KTL EIG
Sbjct: 297 RLGDF-IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIG 356

Query: 534 NMFGLSKERVRQLENRALYKLK 554
            +F +++ER+RQ+E +AL KL+
Sbjct: 357 QIFNVTRERIRQIEAKALRKLR 377

[Close]

BLAST of CaUC04G075120 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-59
Identity = 136/362 (37.57%), Postives = 216/362 (59.67%), Query Frame = 0


Query: 210 VKSTRLQDRRSKKRKKPKHV----TTIHETSNSRGKDSRRKTSENFD------------- 269
           +K    + +RS ++K    V    TTI  T++    D      E+ D             
Sbjct: 27  LKPAETKAKRSSRKKATTAVVEPATTIAPTADVDAIDDEDSVGEDEDAAAKAKAKVRKTY 86

Query: 270 PNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAL 329
             D +RL+L      +LL A EE EL  QI DL+ LE ++  L  Q  R P+  EWA A+
Sbjct: 87  TEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAV 146

Query: 330 GLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEK 389
                  + +L   R +++K++ +NLR+VV IAK+Y  RGLS  DL+QEGSLGL+++ EK
Sbjct: 147 DSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 206

Query: 390 FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKP 449
           F  + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y  + ++ +      +    KP
Sbjct: 207 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKP 266

Query: 450 SKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQE-ITADSEVDTPDVSVER 509
           ++EE+A R  +T+E+L  +   +++P SL+  +  ++D+   + I AD E  TP+  V +
Sbjct: 267 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE--TPEDEVAK 326

Query: 510 ELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYK 554
            L+R  +  +L+ LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E +AL K
Sbjct: 327 NLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRK 386

[Close]

BLAST of CaUC04G075120 vs. ExPASy Swiss-Prot
Match: Q31ME3 (RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA2 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.1e-55
Identity = 126/319 (39.50%), Postives = 196/319 (61.44%), Query Frame = 0


Query: 247 TSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLV 306
           +S  + P D +R +L      +LLTA+EE     Q+Q LM+L + +  L+ + G EP+  
Sbjct: 4   SSAQYSP-DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKE 63

Query: 307 EWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGL 366
           EWA A+ L  + L  Q+   + ++ K+I ANLR+VV IAK+YQ R +   DL+QEG+LGL
Sbjct: 64  EWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGL 123

Query: 367 MKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVR 426
            + VEKF P  G +F+TYAYWWIRQ+I +AI + SRTIRLP ++   L K+ + +    +
Sbjct: 124 ERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQ 183

Query: 427 AGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPD 486
                 +  ELA    + +E++ + + M+R P SL   V   QDT  QE+  D E  +P 
Sbjct: 184 QLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPS 243

Query: 487 VSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN 546
             VE+E +RR +RNL+  L+P+++ +I LR+G+++G   +L ++G    +S+ERVR+LE 
Sbjct: 244 DYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLER 303

Query: 547 RALYKLKRCCNSQGLGAYA 566
           +A+  L+R   S+ L  YA
Sbjct: 304 QAMDHLRR--RSRLLAEYA 318

[Close]

BLAST of CaUC04G075120 vs. ExPASy TrEMBL
Match: A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1)

HSP 1 Score: 977.2 bits (2525), Expect = 2.8e-281
Identity = 510/573 (89.01%), Postives = 532/573 (92.84%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFHEQATPARYFSTSF 60
           MEAGLNLLSSSSPFISRCHPRSFL PSCSS    SSSSSSSSV MF EQA+PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDHDHLVWELKHQAVEWP 120
           LSQEQHHECRPQS+ILKDDR+SQMTL+RRLIERSV IDE SR DHDHL+WELKHQAVEWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAALLVDES 180
           GLLSSWP +QMEEYKISS+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAALLVDE+
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 ELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHVTTIHETS 240
           ELVGT+LDY+S DD           SLSKEGRTV+STRLQDRRSKKRK PKHVTTI E S
Sbjct: 181 ELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEIS 240

Query: 241 NSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQ 300
           N RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMIL+NVKARLQ
Sbjct: 241 NFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQ 300

Query: 301 SQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLH 360
           SQF REPTLVEWAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLH
Sbjct: 301 SQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLH 360

Query: 361 DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGK 420
           DLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGK
Sbjct: 361 DLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGK 420

Query: 421 VTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEI 480
           VTEAKNYFVRAGNYKPSKEELAAR GITVER DKL+FMSRIPRSLQQ VWADQ+TTFQEI
Sbjct: 421 VTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEI 480

Query: 481 TADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL 540
           TADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGL
Sbjct: 481 TADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGL 540

Query: 541 SKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           SKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 541 SKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of CaUC04G075120 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 934.5 bits (2414), Expect = 2.1e-268
Identity = 482/531 (90.77%), Postives = 500/531 (94.16%), Query Frame = 0


Query: 39  VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSR 98
           V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 99  SDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIAL 158
           SDHDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 159 AKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDR 218
           AKKALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQDR
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQDR 493

Query: 219 RSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESEL 278
           RSKKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+L
Sbjct: 494 RSKKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDL 553

Query: 279 IVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL 338
           IVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Sbjct: 554 IVQIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANL 613

Query: 339 RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIF 398
           RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF
Sbjct: 614 RMVVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIF 673

Query: 399 EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIP 458
           +HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIP
Sbjct: 674 QHSRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIP 733

Query: 459 RSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFG 518
           RSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFG
Sbjct: 734 RSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 793

Query: 519 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 794 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CaUC04G075120 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 934.5 bits (2414), Expect = 2.1e-268
Identity = 482/531 (90.77%), Postives = 500/531 (94.16%), Query Frame = 0


Query: 39  VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSR 98
           V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371

Query: 99  SDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIAL 158
           SDHDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431

Query: 159 AKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDR 218
           AKKALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQDR
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQDR 491

Query: 219 RSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESEL 278
           RSKKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+L
Sbjct: 492 RSKKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDL 551

Query: 279 IVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL 338
           IVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Sbjct: 552 IVQIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANL 611

Query: 339 RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIF 398
           RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF
Sbjct: 612 RMVVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIF 671

Query: 399 EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIP 458
           +HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIP
Sbjct: 672 QHSRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIP 731

Query: 459 RSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFG 518
           RSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFG
Sbjct: 732 RSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 791

Query: 519 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 792 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of CaUC04G075120 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 932.9 bits (2410), Expect = 6.2e-268
Identity = 481/531 (90.58%), Postives = 500/531 (94.16%), Query Frame = 0


Query: 39  VSMFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSR 98
           V MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 99  SDHDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIAL 158
           SDHDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 159 AKKALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDR 218
           AKKALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQ+R
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQER 493

Query: 219 RSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESEL 278
           RSKKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+L
Sbjct: 494 RSKKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDL 553

Query: 279 IVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANL 338
           IVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANL
Sbjct: 554 IVQIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANL 613

Query: 339 RMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIF 398
           RMVVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF
Sbjct: 614 RMVVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIF 673

Query: 399 EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIP 458
           +HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIP
Sbjct: 674 QHSRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIP 733

Query: 459 RSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFG 518
           RSLQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFG
Sbjct: 734 RSLQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 793

Query: 519 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 794 IEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of CaUC04G075120 vs. ExPASy TrEMBL
Match: A0A5D3CAF4 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00200 PE=3 SV=1)

HSP 1 Score: 932.6 bits (2409), Expect = 8.0e-268
Identity = 480/529 (90.74%), Postives = 499/529 (94.33%), Query Frame = 0


Query: 41  MFHEQATPARYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSD 100
           MF EQA+PARYFSTSFLSQEQHHECRPQS+ILKDDRTSQMTLDRRLIERSV IDE SRSD
Sbjct: 1   MFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSRSD 60

Query: 101 HDHLVWELKHQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAK 160
           HDHL+WELKHQAVEWP LLSSWPSLQMEEYKISS EK+SYNA GEMLVKDEPENVIALAK
Sbjct: 61  HDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIALAK 120

Query: 161 KALSASKQAALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRS 220
           KALSASKQAALLVDESELVGT+LDY+S DD           SLSKEGRTV+STRLQ+RRS
Sbjct: 121 KALSASKQAALLVDESELVGTSLDYSSLDD-----------SLSKEGRTVRSTRLQERRS 180

Query: 221 KKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIV 280
           KKRK PKHVTTIHETSN RGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEES+LIV
Sbjct: 181 KKRKVPKHVTTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIV 240

Query: 281 QIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRM 340
           QIQDLMIL+NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRM
Sbjct: 241 QIQDLMILDNVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRM 300

Query: 341 VVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEH 400
           VVHIAKQY GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+H
Sbjct: 301 VVHIAKQYLGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQH 360

Query: 401 SRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRS 460
           SRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAA  GITVERLDKL+FMSRIPRS
Sbjct: 361 SRTIRLPENVYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRS 420

Query: 461 LQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIE 520
           LQQ VWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLL+ILSPKERRIIRLRFGIE
Sbjct: 421 LQQPVWADQDTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIE 480

Query: 521 DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADILT 570
           DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYAD+LT
Sbjct: 481 DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 518

[Close]

BLAST of CaUC04G075120 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 531.2 bits (1367), Expect = 1.0e-150
Identity = 313/579 (54.06%), Postives = 398/579 (68.74%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFHEQATP-----------A 60
           MEA  NL+SSS  F ++ H +         SS SS SSV M H+Q T            +
Sbjct: 1   MEATRNLVSSSPSFQTKTHLK---------SSYSSPSSVVMLHDQTTTPVVNSRHLNSLS 60

Query: 61  RYFSTSFLSQEQHHECRPQSEILKDDRTSQMTLDRRLIERSVSIDESSRSDHDHLVWELK 120
           R+F  S LSQE   E RP S  L+DDRTSQ+TL+RR  +  VS  E  + +      +L 
Sbjct: 61  RHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSREDEKFEQ-----QLL 120

Query: 121 HQAVEWPGLLSSWPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQA 180
           H    W  L+S   S    E K+ +V           L   E  +V+ALA+KALSASKQA
Sbjct: 121 HSTGLWNLLISPLTS----ETKLPAVVSP--------LADAELCDVVALAQKALSASKQA 180

Query: 181 ALLVDESELVGTNLDYTSPDDLAHIGIYSLISSLSKEGRTVKSTRLQDRRSKKRKKPKHV 240
           ALLVD++E    N      D L+     S   SL ++G  V+S R  +RR+K R+ PK  
Sbjct: 181 ALLVDDTE---ANPSDNIKDSLS----TSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSN 240

Query: 241 TTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILE 300
               E    +   +++K  +  D +D L+LFLWGPETK+LLTA+EE+ELI  IQ L+ LE
Sbjct: 241 DVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLE 300

Query: 301 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQ 360
            VK +L+SQ G EPT+ EWAEA+G++   L+S +H  R SREKLI ANLR+VVHIAKQYQ
Sbjct: 301 KVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQ 360

Query: 361 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 420
            RGL+  DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+IF++SRTIRLPEN
Sbjct: 361 NRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPEN 420

Query: 421 VYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQ 480
           VY LLGKV+EA+   V+ GNY+PSKEELA   G++ E+LDKLL+ +R P S+QQ +W+DQ
Sbjct: 421 VYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQ 480

Query: 481 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLE 540
           DTTFQEIT DS ++TP +SV ++LMR H+RNLLN+LSPKERRII+LRFGI+ GK+++L E
Sbjct: 481 DTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSE 540

Query: 541 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADIL 569
           IG ++GLSKERVRQLE+RALY+LK+  NS GL AYAD+L
Sbjct: 541 IGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of CaUC04G075120 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 252.7 bits (644), Expect = 7.1e-67
Identity = 137/356 (38.48%), Postives = 215/356 (60.39%), Query Frame = 0


Query: 210 VKSTRLQDRRSKKRK-KPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKK 269
           V+STR  +R++++ K   K  + I           +R  ++  D NDPLR       + K
Sbjct: 212 VRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK 271

Query: 270 LLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRI 329
           LLT +EE EL   IQDL+ LE ++  L  + GR+PT  +WA A G+  + L+ ++H   +
Sbjct: 272 LLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTL 331

Query: 330 SREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWW 389
            ++K+I +N+R+V+ IAK YQG G++L DL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 332 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 391

Query: 390 IRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERL 449
           I+Q++RK++ + SR IRLP ++     +V EA+          P  EE+A   G++++RL
Sbjct: 392 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 451

Query: 450 DKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLNILSPK 509
             +L   + PRSL Q +  +Q+    E+ AD E  T +  + +E MR+ +  +L+ L  +
Sbjct: 452 MAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTR 511

Query: 510 ERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY 565
           E+++IR RFG+EDG+ KTL EIG M G+S+ERVRQ+E+ A  KLK    +  L  Y
Sbjct: 512 EKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of CaUC04G075120 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-42
Identity = 106/302 (35.10%), Postives = 157/302 (51.99%), Query Frame = 0


Query: 263 GPETKKLLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQ 322
           G      L+  EE +L + +++   LEN+   ++     E   V  A   G   +     
Sbjct: 116 GASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEI 175

Query: 323 LHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA 382
           L   + +REK+     R+VV IA  YQG+GL+L DL+QEGS+GL++  E+F P  G + +
Sbjct: 176 LCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLS 235

Query: 383 TYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAG 442
           TY YWWI+Q+I +AI   SR ++LP +++ L  KV EA N   R    +PS EE+A    
Sbjct: 236 TYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLN 295

Query: 443 ITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLL 502
           + V  +   +  SR P SL +    +   T QEI    +   P+  V+RE M+  I  LL
Sbjct: 296 LNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLL 355

Query: 503 NILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLG 562
             L+ +E R++ L FG+      +  EIG    LS+ERVRQ+   AL KL+   N   L 
Sbjct: 356 GSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLK 414

Query: 563 AY 565
            Y
Sbjct: 416 IY 414

[Close]

BLAST of CaUC04G075120 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 156.0 bits (393), Expect = 9.1e-38
Identity = 102/373 (27.35%), Postives = 198/373 (53.08%), Query Frame = 0


Query: 198 SLISSLSKEGRTVKSTRLQ-----DRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFD 257
           S+ S LS     V +T  Q      RR  K+K  +   T      S      R T  N D
Sbjct: 198 SITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNID 257

Query: 258 PNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAL 317
                R   +  + +++  ++ E+E+   ++ +  +E ++ +L+ + G+  +L  WA A 
Sbjct: 258 VPRVRRPPKYRKKRERI--SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 317

Query: 318 GLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEK 377
           G+  + L   LH     R++L+ +   +V+ +A+ Y+G G++  DL+Q G +G+++  E+
Sbjct: 318 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAER 377

Query: 378 FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK- 437
           F    G +F+TY  +WIR+S+   +  H+R + +P ++   +  + +A+     +   K 
Sbjct: 378 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 437

Query: 438 PSKEELAARAGITVERLDKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVDTPDVSVER 497
            + EE+A   G +V+++       ++  S+ + V     T F E T D+ +++P+ +V R
Sbjct: 438 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 497

Query: 498 ELMRRHIRNLLNILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYK 557
           +  RR I +LL  L P+E++++ LR+G++D + K+L EIG +  +SKE +R++E RA+ K
Sbjct: 498 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAK 557

Query: 558 LKRCCNSQGLGAY 565
           L+   N++ L  Y
Sbjct: 558 LRDQPNAEDLRYY 568

[Close]

BLAST of CaUC04G075120 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-30
Identity = 100/358 (27.93%), Postives = 184/358 (51.40%), Query Frame = 0


Query: 212 STRLQDRRSKKRKKPKHVTTIHETSNSRGKDSRRKTSENFDPNDPLRLFLWGPETKKLLT 271
           S R +   +KK+    HV  + + S+ +                 +R ++ G  ++ +L+
Sbjct: 158 SARQRRIGAKKKTNMTHVKAVSDVSSGK----------------QVRGYVKGVISEDVLS 217

Query: 272 AQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRISRE 331
             E   L  +I+  + L++ K+RL+ + G EP+  + A +L ++   LQ+ L    ++RE
Sbjct: 218 HVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLARE 277

Query: 332 KLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQ 391
           KL  +N+R+V+ IA++Y   G  + DL+Q G +GL++ +EKF    G R +TY YWWIRQ
Sbjct: 278 KLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQ 337

Query: 392 SIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAARAGITVERL--- 451
            + +A+ ++SRT+RLP +++  LG +  AK      G   PS + +A    ++ +++   
Sbjct: 338 GVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKG-ITPSIDRIAESLNMSQKKVRNA 397

Query: 452 -DKLLFMSRIPRSLQQCVWADQDTTFQEITADSEVD-TPDVSVERELMRRHIRNLLN-IL 511
            + +  +  + R     +      T     AD+ ++  P    +   ++  +  L++  L
Sbjct: 398 TEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATL 457

Query: 512 SPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGA 564
             +E+ IIRL +G+ D +  T  +I    GLS+ERVRQ+   AL KLK     + + A
Sbjct: 458 GEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA 497

The following BLAST results are available for this feature:

BLAST of CaUC04G075120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882876.1	1.3e-291	93.15	RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]	[more]
XP_031742499.1	5.9e-281	89.01	RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hy...	[more]
XP_016902883.1	4.4e-268	90.77	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m...	[more]
XP_016902885.1	4.4e-268	90.77	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis m...	[more]
KAA0063818.1	1.3e-267	90.58	RNA polymerase sigma factor sigF [Cucumis melo var. makuwa]	[more]

BLAST of CaUC04G075120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD95	1.5e-149	54.06	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
O22056	1.0e-65	38.48	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.4e-62	39.75	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	1.8e-59	37.57	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q31ME3	6.1e-55	39.50	RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]

BLAST of CaUC04G075120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEQ6	2.8e-281	89.01	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1	[more]
A0A1S4E3S8	2.1e-268	90.77	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S4E4I4	2.1e-268	90.77	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7V893	6.2e-268	90.58	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CAF4	8.0e-268	90.74	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CaUC04G075120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36990.1	1.0e-150	54.06	RNApolymerase sigma-subunit F	[more]
AT1G08540.1	7.1e-67	38.48	RNApolymerase sigma subunit 2	[more]
AT5G13730.1	2.7e-42	35.10	sigma factor 4	[more]
AT3G53920.1	9.1e-38	27.35	RNApolymerase sigma-subunit C	[more]
AT1G64860.1	1.4e-30	27.93	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 505..517 score: 43.67 coord: 357..370 score: 59.4 coord: 381..389 score: 75.05 coord: 541..552 score: 52.74 coord: 526..541 score: 49.64
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 357..370
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 526..552
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 414..486 e-value: 7.6E-13 score: 48.4
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 4..569 e-value: 1.5E-158 score: 527.2
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 330..555 e-value: 3.3E-36 score: 122.3
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 333..402 e-value: 1.5E-18 score: 66.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 406..483 e-value: 2.1E-7 score: 33.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 488..568 e-value: 5.5E-24 score: 85.6
None	No IPR available	GENE3D	1.20.120.1810		coord: 191..402 e-value: 3.2E-40 score: 140.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..252
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 27..568
None	No IPR available	PANTHER	PTHR30603:SF50	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	coord: 27..568
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 495..553 e-value: 1.13842E-11 score: 57.8846
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 501..553 e-value: 3.8E-17 score: 61.5
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 467..563
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 406..479
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 253..403

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G075120.1	CaUC04G075120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity