CaUC04G074180 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G074180
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	Ciama_Chr04: 23319591 .. 23320814 (-)
RNA-Seq Expression	CaUC04G074180
Synteny	CaUC04G074180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTTCAATCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAACCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGCGGTTCTCTTCCCACTTTTCTTGCTTCTCAAACCCAGTCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTTCCGAGCTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGATTGCTAATGAGATACGTGCTAAAGATGCTAGTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCCGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCGACGTCCTCATCGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCTTTGTGTTCAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCTGCGCCAACAGATGCTAATCCTCTTTCTAATGTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCCGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCCCCTCCGGGATGGAAGCCTGGGGACCCTGTGCCATTACCCTCAATGGACTCTCTTCCTGTTACTAGAGTGGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCCCCTGAGCCAATTCAAGTTAGGCATGTACAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

mRNA sequence

ATGCTTCAGCATCAAATTGTTCAATCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAACCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGCGGTTCTCTTCCCACTTTTCTTGCTTCTCAAACCCAGTCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTTCCGAGCTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGATTGCTAATGAGATACGTGCTAAAGATGCTAGTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCCGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCGACGTCCTCATCGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCTTTGTGTTCAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCTGCGCCAACAGATGCTAATCCTCTTTCTAATGTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCCGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCCCCTCCGGGATGGAAGCCTGGGGACCCTGTGCCATTACCCTCAATGGACTCTCTTCCTGTTACTAGAGTGGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCCCCTGAGCCAATTCAAGTTAGGCATGTACAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTTCAATCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAACCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGCGGTTCTCTTCCCACTTTTCTTGCTTCTCAAACCCAGTCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTTCCGAGCTTCAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGATTGCTAATGAGATACGTGCTAAAGATGCTAGTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCCGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCGACGTCCTCATCGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCTTTGTGTTCAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCTGCGCCAACAGATGCTAATCCTCTTTCTAATGTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCCGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCCCCTCCGGGATGGAAGCCTGGGGACCCTGTGCCATTACCCTCAATGGACTCTCTTCCTGTTACTAGAGTGGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCCCCTGAGCCAATTCAAGTTAGGCATGTACAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

Protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Homology

[Close]

BLAST of CaUC04G074180 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 742.7 bits (1916), Expect = 1.7e-210
Identity = 389/407 (95.58%), Postives = 398/407 (97.79%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPSTSLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP RVK KDDAENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAP PTDANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
           N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP MDSLPVTRVDEP
Sbjct: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of CaUC04G074180 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 729.6 bits (1882), Expect = 1.5e-206
Identity = 384/408 (94.12%), Postives = 396/408 (97.06%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYRRP RVKTKDD EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAP PTDANPL+
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of CaUC04G074180 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] >KAA0047287.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 727.2 bits (1876), Expect = 7.6e-206
Identity = 385/407 (94.59%), Postives = 393/407 (96.56%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP RVKT+  AENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of CaUC04G074180 vs. NCBI nr
Match: XP_004142109.1 (mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN54188.1 hypothetical protein Csa_017920 [Cucumis sativus])

HSP 1 Score: 716.8 bits (1849), Expect = 1.0e-202
Identity = 383/407 (94.10%), Postives = 390/407 (95.82%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP R KT+ DAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPL 
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANPL- 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
             AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEP
Sbjct: 301 --AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of CaUC04G074180 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 697.6 bits (1799), Expect = 6.4e-197
Identity = 371/408 (90.93%), Postives = 389/408 (95.34%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA E+RAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADY+   RVKT DD ENESLC STTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEKTIEPMIEPPAP PTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of CaUC04G074180 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 2.4e-138
Identity = 282/434 (64.98%), Postives = 336/434 (77.42%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV+ELQEIL+LQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDAEN----ESLCSTTVASQL 240
           +KD+SL AFANKLKDAE+VLD+L DDY+DYR+P R K ++D E+     S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 RLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA 300
           +L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMP 360
           VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+P
Sbjct: 301 VENMEKKVEALIEPPPPPEA-----MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPSMDSLPVTRVDEPQ-LRPNALPGLHKPPEPIQVRHVQLDILDQDDDS 408
           PPGWKPGDPV LP ++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

[Close]

BLAST of CaUC04G074180 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 9.2e-05
Identity = 58/187 (31.02%), Postives = 83/187 (44.39%), Query Frame = 0


Query: 114 STPSTSKEILSLFNVL--QTQLFE-AVSELQEILNLQDSKQKIANEIRAKDASLRAFANK 173
           S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  
Sbjct: 60  SNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQKEIEEKDKLISTLALN 119

Query: 174 LKDAEQVLD-VLFDDYADYRRPHR-----------VKTKDDAENESLCSTTVASQLRLSD 233
           LKD E  L+  L  D  +    +            +K  DDA +       V  ++   D
Sbjct: 120 LKDIESFLENELSQDNVNINNGNASDGIVNEVLIDLKQPDDAAS---MDNIVNREVSPED 179

Query: 234 ILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFA 273
           ++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A
Sbjct: 180 LISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRSSVLFTKPPPHVLKYYGLA 239

[Close]

BLAST of CaUC04G074180 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 729.6 bits (1882), Expect = 7.4e-207
Identity = 384/408 (94.12%), Postives = 396/408 (97.06%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYRRP RVKTKDD EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAP PTDANPL+
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of CaUC04G074180 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 3.7e-206
Identity = 385/407 (94.59%), Postives = 393/407 (96.56%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP RVKT+  AENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of CaUC04G074180 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 3.7e-206
Identity = 385/407 (94.59%), Postives = 393/407 (96.56%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP RVKT+  AENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of CaUC04G074180 vs. ExPASy TrEMBL
Match: A0A0A0KXB7 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 716.8 bits (1849), Expect = 5.0e-203
Identity = 383/407 (94.10%), Postives = 390/407 (95.82%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+LRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP R KT+ DAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPL 
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANPL- 300

Query: 301 NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP 360
             AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEP
Sbjct: 301 --AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of CaUC04G074180 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.3e-195
Identity = 369/408 (90.44%), Postives = 386/408 (94.61%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA E+RAKDA+LRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPHRVKTKDDAENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADY+   RVKT DD ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAP PTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of CaUC04G074180 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 493.4 bits (1269), Expect = 1.7e-139
Identity = 282/434 (64.98%), Postives = 336/434 (77.42%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV+ELQEIL+LQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDASLRAFANKLKDAEQVLDVLFDDYADYRRPHRVKTKDDAEN----ESLCSTTVASQL 240
           +KD+SL AFANKLKDAE+VLD+L DDY+DYR+P R K ++D E+     S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 RLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA 300
           +L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMP 360
           VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+P
Sbjct: 301 VENMEKKVEALIEPPPPPEA-----MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPSMDSLPVTRVDEPQ-LRPNALPGLHKPPEPIQVRHVQLDILDQDDDS 408
           PPGWKPGDPV LP ++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

The following BLAST results are available for this feature:

BLAST of CaUC04G074180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882754.1	1.7e-210	95.58	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_022143910.1	1.5e-206	94.12	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_008449288.1	7.6e-206	94.59	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] ...	[more]
XP_004142109.1	1.0e-202	94.10	mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN5418...	[more]
XP_023518528.1	6.4e-197	90.93	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]

BLAST of CaUC04G074180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	2.4e-138	64.98	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	9.2e-05	31.02	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of CaUC04G074180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ51	7.4e-207	94.12	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A5A7TZC1	3.7e-206	94.59	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	3.7e-206	94.59	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KXB7	5.0e-203	94.10	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]
A0A6J1HH73	1.3e-195	90.44	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]

BLAST of CaUC04G074180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	1.7e-139	64.98	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 128..269 e-value: 1.0E-8 score: 35.1
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 50..406
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G074180.1	CaUC04G074180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity