CaUC04G073440 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G073440
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPyrimidine-specific ribonucleoside hydrolase RihB
LocationCiama_Chr04: 22621641 .. 22622730 (+)
RNA-Seq ExpressionCaUC04G073440
SyntenyCaUC04G073440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGTTTTAGTTTAATCTCTTTAATATCCTCAATCAAACATTGTAAATTTTGATAGGATGTGCCATGTTTACTAACATTATCTTTGGCTCGTTTTGCCCACTCAACAATATCATTCTCCATTTTCTCATCTTGATGTTCCATTATAGACCTAACCATGGTCTCAACGGTAGAGCGGTCGTATGAATCCTGTATTTGAATCCCAATTTTCCATACCTTAGTGAGCCATGTAGCGTTACTAGGTTGGTCTCCAATATGGGGCCAAGAGATCATAGGAACCCCAGCAGTAAGGCTCTCCAAGGTGGAGTTCCATCCTGAATGTGTCAAGAATCCACCAATGGCTTCGTGGCTCAAAACTTCCTCTTGCGGAGCCCAATTCACAATCACCCATCTTCCCTCTGCCTTCGTATCCATAATTTCTCTAATAACCAACTCTTTTTGCTTCTTATCTTCTTCCCCTGCCTCTTCAATTAACCCATCTGATCTCAACACCAACACAAATGCCTTCCCGCTGTTCACTAACCCATTCCAAAACTCCTTCAATTGTGAGCTTGTTAACTTTACCAAGCTCCCGAAGCTGATGAACACCACAGATCTCGGTGGCTGTGAGTCGAGCCACGCTAAACAACTGTGATCTTCATTCCAAAATTCACATTGAGATTGGGCCGTGGTCTTCACCAGTGAGTGAATTGGTCCAATTGTGTAAACTTTTTTATATACCTCGGAAAGACTCGTCACAAACGGAGCTTCGAGTTCGTTGAATGTGTTGAGGATTATACCACAAGATTTAGATGTGGCCAAAGTTTGGTTCACAAACTTCATTGGGTCCCTTTTTGCTACAGCTTCGACTGACCAAAATCCCGGCAAATCTTTACATCTTAAAATCCCTTCTCCTCCAGGAACGCCATGGAGTTCTTGGTTTGAATTTCCCACTGCAAACACAGAAAATGAAATAGGTCTTAAACTTCAATAATTTTCAATCTCTTATAAAAAAGGATTGAATCAAGGAAGTCACCTGGGTATGGAATCTGGCCATCTTCAAGAAGCTTGGGAATCCAGAAGAAAAGAAACAAGAAACGGGCACTGA

mRNA sequence

ATGGAACCTAACCATGGTCTCAACGTGAGCCATGTAGCGTTACTAGGTTGGTCTCCAATATGGGGCCAAGAGATCATAGGAACCCCAGCAGTAAGGCTCTCCAAGGTGGAGTTCCATCCTGAATGTGTCAAGAATCCACCAATGGCTTCGTGGCTCAAAACTTCCTCTTGCGGAGCCCAATTCACAATCACCCATCTTCCCTCTGCCTTCGTATCCATAATTTCTCTAATAACCAACTCTTTTTGCTTCTTATCTTCTTCCCCTGCCTCTTCAATTAACCCATCTGATCTCAACACCAACACAAATGCCTTCCCGCTGTTCACTAACCCATTCCAAAACTCCTTCAATTGTGAGCTTGTTAACTTTACCAAGCTCCCGAAGCTGATGAACACCACAGATCTCGGTGGCTGTGAGTCGAGCCACGCTAAACAACTACTCGTCACAAACGGAGCTTCGAGTTCGTTGAATGTGTTGAGGATTATACCACAAGATTTAGATGTGGCCAAAGTTTGGTTCACAAACTTCATTGGGTCCCTTTTTGCTACAGCTTCGACTGACCAAAATCCCGGCAAATCTTTACATCTTAAAATCCCTTCTCCTCCAGGAACGCCATGGAGTTCTTGGTTTGAATTTCCCACTGCAAACACAGAAAATGAAATAGGATTGAATCAAGGAAGTCACCTGGGTATGGAATCTGGCCATCTTCAAGAAGCTTGGGAATCCAGAAGAAAAGAAACAAGAAACGGGCACTGA

Coding sequence (CDS)

ATGGAACCTAACCATGGTCTCAACGTGAGCCATGTAGCGTTACTAGGTTGGTCTCCAATATGGGGCCAAGAGATCATAGGAACCCCAGCAGTAAGGCTCTCCAAGGTGGAGTTCCATCCTGAATGTGTCAAGAATCCACCAATGGCTTCGTGGCTCAAAACTTCCTCTTGCGGAGCCCAATTCACAATCACCCATCTTCCCTCTGCCTTCGTATCCATAATTTCTCTAATAACCAACTCTTTTTGCTTCTTATCTTCTTCCCCTGCCTCTTCAATTAACCCATCTGATCTCAACACCAACACAAATGCCTTCCCGCTGTTCACTAACCCATTCCAAAACTCCTTCAATTGTGAGCTTGTTAACTTTACCAAGCTCCCGAAGCTGATGAACACCACAGATCTCGGTGGCTGTGAGTCGAGCCACGCTAAACAACTACTCGTCACAAACGGAGCTTCGAGTTCGTTGAATGTGTTGAGGATTATACCACAAGATTTAGATGTGGCCAAAGTTTGGTTCACAAACTTCATTGGGTCCCTTTTTGCTACAGCTTCGACTGACCAAAATCCCGGCAAATCTTTACATCTTAAAATCCCTTCTCCTCCAGGAACGCCATGGAGTTCTTGGTTTGAATTTCCCACTGCAAACACAGAAAATGAAATAGGATTGAATCAAGGAAGTCACCTGGGTATGGAATCTGGCCATCTTCAAGAAGCTTGGGAATCCAGAAGAAAAGAAACAAGAAACGGGCACTGA

Protein sequence

MEPNHGLNVSHVALLGWSPIWGQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQFTITHLPSAFVSIISLITNSFCFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGGCESSHAKQLLVTNGASSSLNVLRIIPQDLDVAKVWFTNFIGSLFATASTDQNPGKSLHLKIPSPPGTPWSSWFEFPTANTENEIGLNQGSHLGMESGHLQEAWESRRKETRNGH
Homology
BLAST of CaUC04G073440 vs. NCBI nr
Match: KAG6603616.1 (17.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 9.6e-18
Identity = 59/104 (56.73%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 146 LVTNGASSSLNVLRIIPQDLDVAKVWFTNFIGSLFATASTDQNPGKSLHLKIPSPPGTPW 205
           LV NGASSS NVLRI P+D DVAK+WFT FIG   AT+S+D+NPGKSLHL  PS PGTPW
Sbjct: 271 LVRNGASSSSNVLRIKPEDRDVAKIWFTKFIGFQCATSSSDKNPGKSLHLISPSAPGTPW 330

Query: 206 SSWFEFPTANTENEIGLNQGSHLGMESGHLQE-AWESRRKETRN 249
           SS    P  N  NE+ L     LG      QE   ESR  + R+
Sbjct: 331 SSCSALPDGNRVNEM-LAIFKELGNPEEKEQETGTESRESKNRD 373

BLAST of CaUC04G073440 vs. NCBI nr
Match: PON83987.1 (Os06g0343500 protein [Trema orientale])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 58/138 (42.03%), Postives = 75/138 (54.35%), Query Frame = 0

Query: 22  GQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGA-QFTITHLPSAFVSIISLITNS 81
           G   IGTP V  S  EFHP+CV NPP+ SWL+ + CGA  FT T L       + L  N 
Sbjct: 110 GHAAIGTPQVTASSTEFHPQCVTNPPIDSWLRMADCGAHDFTTTPLS------LVLSRNP 169

Query: 82  FCFLSSSPASSINPSDL-NTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGGCES 141
               +S   S +  S L  T+ N + LF+NP   SF+C   N   LPK  NTT   GCES
Sbjct: 170 SGSSTSKSGSVLEFSGLFTTHKNLWLLFSNPMAISFSCNSENEPLLPKHKNTTLRCGCES 229

Query: 142 SHAKQLLVTNGASSSLNV 158
           +HAKQ   T+   ++L++
Sbjct: 230 NHAKQSKDTSLKPTALSL 241

BLAST of CaUC04G073440 vs. NCBI nr
Match: MQM23410.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-13
Identity = 53/125 (42.40%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 22  GQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQFTITHLPSAFVS-----IISL 81
           GQ  +GTP   LS+VEFHP+CV+NPP A W  TS+CGAQ   T+   A +S       S 
Sbjct: 99  GQARVGTPFHTLSRVEFHPQCVRNPPTAGWASTSTCGAQDGHTNPRPAVLSRKPSGSASP 158

Query: 82  ITNSFCFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGG 141
            + S   +  SP + +     N + N  PL ++P   SF+C       LPK  NTTD GG
Sbjct: 159 RSASLGSVKRSPFNRVR----NDHKNRCPLRSSPSAISFSCSFSKLPMLPKHRNTTDAGG 218

BLAST of CaUC04G073440 vs. NCBI nr
Match: BAT96348.1 (hypothetical protein VIGAN_08326900 [Vigna angularis var. angularis])

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-13
Identity = 57/142 (40.14%), Postives = 73/142 (51.41%), Query Frame = 0

Query: 2   EPNHGLNVSHVALLGWSPIWGQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQ- 61
           +P    +V   ALLGWS   G   IGTP V LSK EFHP+ + NPP+  WL+ S+ GAQ 
Sbjct: 63  KPTFRTSVIRAALLGWSECIGHVAIGTPMVMLSKHEFHPQWLINPPVEGWLRISNWGAQS 122

Query: 62  FTITHLPSAFVSIISLITNSFCFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELV 121
            TI+ LPS   S  +    S  F S S   S   + L+T  N   L +NP    + C   
Sbjct: 123 LTISPLPSTLSS--NPFGRSSLFASFSSKMSPLSASLSTQMNFCLLCSNPIAICWICSTF 182

Query: 122 NFTKLPKLMNTTDLGGCESSHA 143
               +PK    T+LG C SSH+
Sbjct: 183 KVVVVPKDTYITELGSCLSSHS 202

BLAST of CaUC04G073440 vs. NCBI nr
Match: KAG6640052.1 (hypothetical protein CIPAW_10G145000 [Carya illinoinensis] >KAG6693003.1 hypothetical protein I3842_10G142300 [Carya illinoinensis])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-13
Identity = 55/123 (44.72%), Postives = 66/123 (53.66%), Query Frame = 0

Query: 22  GQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQFTITHLPSAFVSIISLITNSF 81
           GQ+  GTPA  LS +EFHP  VKNPP+  WL T SCG Q  I  +P  FV    L+TNS 
Sbjct: 53  GQQSTGTPAHMLSSIEFHPLWVKNPPIDGWLSTCSCGYQLNI--IPLFFV----LVTNSL 112

Query: 82  CFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGGCESSH 141
           C       +S   S L T+  AF L  +P  NS  C  V    LPKL    +LG  E SH
Sbjct: 113 C--DKINEASFTMSGLITHKKAFLLLASPQANSMICGGVRSVTLPKLTYIIELGSLELSH 167

Query: 142 AKQ 145
           ++Q
Sbjct: 173 SRQ 167

BLAST of CaUC04G073440 vs. ExPASy TrEMBL
Match: A0A2P5EEK7 (Os06g0343500 protein OS=Trema orientale OX=63057 GN=TorRG33x02_202810 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-14
Identity = 58/138 (42.03%), Postives = 75/138 (54.35%), Query Frame = 0

Query: 22  GQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGA-QFTITHLPSAFVSIISLITNS 81
           G   IGTP V  S  EFHP+CV NPP+ SWL+ + CGA  FT T L       + L  N 
Sbjct: 110 GHAAIGTPQVTASSTEFHPQCVTNPPIDSWLRMADCGAHDFTTTPLS------LVLSRNP 169

Query: 82  FCFLSSSPASSINPSDL-NTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGGCES 141
               +S   S +  S L  T+ N + LF+NP   SF+C   N   LPK  NTT   GCES
Sbjct: 170 SGSSTSKSGSVLEFSGLFTTHKNLWLLFSNPMAISFSCNSENEPLLPKHKNTTLRCGCES 229

Query: 142 SHAKQLLVTNGASSSLNV 158
           +HAKQ   T+   ++L++
Sbjct: 230 NHAKQSKDTSLKPTALSL 241

BLAST of CaUC04G073440 vs. ExPASy TrEMBL
Match: A0A0S3SU27 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G326900 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 57/142 (40.14%), Postives = 73/142 (51.41%), Query Frame = 0

Query: 2   EPNHGLNVSHVALLGWSPIWGQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQ- 61
           +P    +V   ALLGWS   G   IGTP V LSK EFHP+ + NPP+  WL+ S+ GAQ 
Sbjct: 63  KPTFRTSVIRAALLGWSECIGHVAIGTPMVMLSKHEFHPQWLINPPVEGWLRISNWGAQS 122

Query: 62  FTITHLPSAFVSIISLITNSFCFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELV 121
            TI+ LPS   S  +    S  F S S   S   + L+T  N   L +NP    + C   
Sbjct: 123 LTISPLPSTLSS--NPFGRSSLFASFSSKMSPLSASLSTQMNFCLLCSNPIAICWICSTF 182

Query: 122 NFTKLPKLMNTTDLGGCESSHA 143
               +PK    T+LG C SSH+
Sbjct: 183 KVVVVPKDTYITELGSCLSSHS 202

BLAST of CaUC04G073440 vs. ExPASy TrEMBL
Match: A0A2P5AGE7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335120 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-13
Identity = 56/137 (40.88%), Postives = 73/137 (53.28%), Query Frame = 0

Query: 22  GQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQFTITHLPSAFVSIISLITNSF 81
           G   IGTP V  S  EFHP+CV NPP  SWL+ + CGA    T +P + V    L  N  
Sbjct: 110 GHAAIGTPQVTASSTEFHPQCVTNPPTESWLRMADCGAH-DFTTIPLSLV----LSRNPS 169

Query: 82  CFLSSSPASSINPS-DLNTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGGCESS 141
              +S   S +  S    T+ N + LF+NP   SF+C   N   LPK  NTT   GCES+
Sbjct: 170 GSSTSKSGSVLGFSGPFTTHKNLWLLFSNPMAISFSCNSENEPLLPKHKNTTLRCGCESN 229

Query: 142 HAKQLLVTNGASSSLNV 158
           HAKQ   T+   ++L++
Sbjct: 230 HAKQSKDTSLKPTALSL 241

BLAST of CaUC04G073440 vs. ExPASy TrEMBL
Match: A0A5A7RK42 (Pyrimidine-specific ribonucleoside hydrolase RihB (Fragment) OS=Striga asiatica OX=4170 GN=STAS_35345 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.7e-13
Identity = 52/136 (38.24%), Postives = 69/136 (50.74%), Query Frame = 0

Query: 9   VSHVALLGWSPIWGQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQ-FTITHLP 68
           V  +AL+ WS   G    GTP +RLSK EFHP+CV+NPP+ASW   S+CGAQ  T + +P
Sbjct: 70  VMKIALIDWSVCMGHANTGTPVIRLSKHEFHPQCVRNPPVASWANISTCGAQSLTTSLIP 129

Query: 69  SAFVSIISLITNSFCFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELVNFTKLPK 128
           + F    +   NS  FL S    S   + LN  TN  P  ++P   S          +P 
Sbjct: 130 APFTLSSNPSGNSIIFLLSPEKMSALSASLNAYTNLNPYDSSPRAISRASSPDREIVVPN 189

Query: 129 LMNTTDLGGCESSHAK 144
               TD   C SS ++
Sbjct: 190 ETYKTDPRACPSSQSR 205

BLAST of CaUC04G073440 vs. ExPASy TrEMBL
Match: A0A199V5K7 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_23657 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 54/123 (43.90%), Postives = 66/123 (53.66%), Query Frame = 0

Query: 22  GQEIIGTPAVRLSKVEFHPECVKNPPMASWLKTSSCGAQFTITHLPSAFVSIISLITNSF 81
           GQ  IGTP   LS VEFHP CV+N P A W  TSSCG QF ++  P +FV      TNS 
Sbjct: 87  GQHSIGTPPHTLSSVEFHPLCVRNAPTAGWQSTSSCGHQFAMS--PLSFVP----STNSG 146

Query: 82  CFLSSSPASSINPSDLNTNTNAFPLFTNPFQNSFNCELVNFTKLPKLMNTTDLGGCESSH 141
               S+ AS +  S L  + N++ LF +P  NS +C  V        M TTD G   S+H
Sbjct: 147 ---GSTAASPLTRSGLMIHRNSYSLFASPHANSISCWFV--------MTTTDPGLLFSNH 192

Query: 142 AKQ 145
            KQ
Sbjct: 207 CKQ 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603616.19.6e-1856.7317.6 kDa class I heat shock protein 3, partial [Cucurbita argyrosperma subsp. so... [more]
PON83987.11.4e-1342.03Os06g0343500 protein [Trema orientale][more]
MQM23410.11.4e-1342.40hypothetical protein [Colocasia esculenta][more]
BAT96348.12.4e-1340.14hypothetical protein VIGAN_08326900 [Vigna angularis var. angularis][more]
KAG6640052.13.2e-1344.72hypothetical protein CIPAW_10G145000 [Carya illinoinensis] >KAG6693003.1 hypothe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5EEK76.9e-1442.03Os06g0343500 protein OS=Trema orientale OX=63057 GN=TorRG33x02_202810 PE=4 SV=1[more]
A0A0S3SU271.2e-1340.14Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G... [more]
A0A2P5AGE72.6e-1340.88Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335120 PE... [more]
A0A5A7RK427.7e-1338.24Pyrimidine-specific ribonucleoside hydrolase RihB (Fragment) OS=Striga asiatica ... [more]
A0A199V5K71.4e-1143.90Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_23657 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G073440.1CaUC04G073440.1mRNA