CaUC04G073050 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G073050
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionjosephin-like protein
LocationCiama_Chr04: 22191861 .. 22192220 (-)
RNA-Seq ExpressionCaUC04G073050
SyntenyCaUC04G073050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACAAAATTAAGCTCAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCGGTGGCCAAGCCCACAGCTTTCCCAAGAAATAGGAAAAGGCTGATCACCGTCTTCTGGGTTTTCCGGCTGCCGAAATCCGCCAGATTCTCGCCGGAAAAGTTCCTCCGCCGCCTCGGCGCCAAAGTGGCTAAAGTTCTACGGTACGTGTCGTTGAGAAAGAGATCGTCGTCTTCGTCGTCCTCCAAAAATGGTTCAAACTTCAATAGATCGCATTCGGTTTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTAAAAGATTGTATCAAGTTCTTCAACTCTTCAAATTCTTCAGCTGTTTGA

mRNA sequence

ATGTCAACAAAATTAAGCTCAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCGGTGGCCAAGCCCACAGCTTTCCCAAGAAATAGGAAAAGGCTGATCACCGTCTTCTGGGTTTTCCGGCTGCCGAAATCCGCCAGATTCTCGCCGGAAAAGTTCCTCCGCCGCCTCGGCGCCAAAGTGGCTAAAGTTCTACGGTACGTGTCGTTGAGAAAGAGATCGTCGTCTTCGTCGTCCTCCAAAAATGGTTCAAACTTCAATAGATCGCATTCGGTTTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTAAAAGATTGTATCAAGTTCTTCAACTCTTCAAATTCTTCAGCTGTTTGA

Coding sequence (CDS)

ATGTCAACAAAATTAAGCTCAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCGGTGGCCAAGCCCACAGCTTTCCCAAGAAATAGGAAAAGGCTGATCACCGTCTTCTGGGTTTTCCGGCTGCCGAAATCCGCCAGATTCTCGCCGGAAAAGTTCCTCCGCCGCCTCGGCGCCAAAGTGGCTAAAGTTCTACGGTACGTGTCGTTGAGAAAGAGATCGTCGTCTTCGTCGTCCTCCAAAAATGGTTCAAACTTCAATAGATCGCATTCGGTTTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTAAAAGATTGTATCAAGTTCTTCAACTCTTCAAATTCTTCAGCTGTTTGA

Protein sequence

MSTKLSSSRRVSFSSDQAVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRRLGAKVAKVLRYVSLRKRSSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNSSAV
Homology
BLAST of CaUC04G073050 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 8.5e-41
Identity = 102/128 (79.69%), Postives = 109/128 (85.16%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQ------AVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLR 60
           MSTKLSSSRRVSFSSDQ      + AKP AFPRNRKRLITVFWVFRLPKS R  P  FLR
Sbjct: 1   MSTKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLR 60

Query: 61  RLGAKVAKVLRYVSLRKRS---SSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFF 120
           R+GAKV KVLRYVSLRKRS   +SSSS K+GSNFNRSHSVS+SMEESHRAEAVKDCI FF
Sbjct: 61  RIGAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFF 120

BLAST of CaUC04G073050 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 104/133 (78.20%), Postives = 109/133 (81.95%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQ-----AVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRR 60
           MSTKLSSSRRVSFSSDQ     + AKP AFPRNRKRLITVFWVFRLPKS R  P  FLRR
Sbjct: 1   MSTKLSSSRRVSFSSDQGAAAASAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRR 60

Query: 61  LGAKVAKVLRYVSLRKR---------SSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKD 120
           +GAKV KVLRYVSLRKR         SSSSSS K+GSNFNRSHSVS+SMEESHRAEAVKD
Sbjct: 61  IGAKVVKVLRYVSLRKRSASPASCSSSSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKD 120

BLAST of CaUC04G073050 vs. NCBI nr
Match: XP_022977351.1 (uncharacterized protein LOC111477703 [Cucurbita maxima])

HSP 1 Score: 173.7 bits (439), Expect = 9.4e-40
Identity = 101/127 (79.53%), Postives = 107/127 (84.25%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQ----AVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRRL 60
           MSTKLSSSRRVSFSSDQ    A AKP AFPRNRKRLITVFWVF+LPKS R  P  FLRR+
Sbjct: 1   MSTKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRI 60

Query: 61  GAKVAKVLRYVSLRKRS------SSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKF 118
           GAKV KVLRYVSLRKRS      SSSSS K+GSNFNRSHSVS+SMEESHRAEAVKDCI F
Sbjct: 61  GAKVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINF 120

BLAST of CaUC04G073050 vs. NCBI nr
Match: KGN54361.1 (hypothetical protein Csa_017994 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.7e-37
Identity = 100/124 (80.65%), Postives = 107/124 (86.29%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQAVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRRLGAKV 60
           MSTKLSS RRVSFSSDQA A   A  R RKR I VFWVFRLPKSARFSPEKFLRRLGAK+
Sbjct: 1   MSTKLSSGRRVSFSSDQAAA---AKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKM 60

Query: 61  AKVLRYVSLRKRSSSSSSS-----KNGSN-FNRSHSVSDSMEESHRAEAVKDCIKFFNSS 119
           AKVLRYVSLRKRS+SS++S      NGS+ FNRSHSVSDSMEESHRAEAVKDCI+FFNSS
Sbjct: 61  AKVLRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSS 120

BLAST of CaUC04G073050 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 3.7e-36
Identity = 87/117 (74.36%), Postives = 97/117 (82.91%), Query Frame = 0

Query: 3   TKLSSSRRVSFSSDQAVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRRLGAKVAK 62
           +K+ SSR VS  SD+  AKPT   RNRKR+ITV WVFRLPKS RFSPE FLRR+GAKVAK
Sbjct: 2   SKIRSSRGVSLRSDEGTAKPTTLQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAK 61

Query: 63  VLRYVSLRKRSSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNSSAV 120
           V+RYVSL+KRS  S  +   +NFNRSHSVSDSMEESHRAEAVKDCI FFNSS+SSAV
Sbjct: 62  VVRYVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVKDCIHFFNSSSSSAV 118

BLAST of CaUC04G073050 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 102/128 (79.69%), Postives = 109/128 (85.16%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQ------AVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLR 60
           MSTKLSSSRRVSFSSDQ      + AKP AFPRNRKRLITVFWVFRLPKS R  P  FLR
Sbjct: 1   MSTKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLR 60

Query: 61  RLGAKVAKVLRYVSLRKRS---SSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFF 120
           R+GAKV KVLRYVSLRKRS   +SSSS K+GSNFNRSHSVS+SMEESHRAEAVKDCI FF
Sbjct: 61  RIGAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFF 120

BLAST of CaUC04G073050 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40
Identity = 101/127 (79.53%), Postives = 107/127 (84.25%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQ----AVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRRL 60
           MSTKLSSSRRVSFSSDQ    A AKP AFPRNRKRLITVFWVF+LPKS R  P  FLRR+
Sbjct: 1   MSTKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRI 60

Query: 61  GAKVAKVLRYVSLRKRS------SSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKF 118
           GAKV KVLRYVSLRKRS      SSSSS K+GSNFNRSHSVS+SMEESHRAEAVKDCI F
Sbjct: 61  GAKVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINF 120

BLAST of CaUC04G073050 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.8e-37
Identity = 100/124 (80.65%), Postives = 107/124 (86.29%), Query Frame = 0

Query: 1   MSTKLSSSRRVSFSSDQAVAKPTAFPRNRKRLITVFWVFRLPKSARFSPEKFLRRLGAKV 60
           MSTKLSS RRVSFSSDQA A   A  R RKR I VFWVFRLPKSARFSPEKFLRRLGAK+
Sbjct: 1   MSTKLSSGRRVSFSSDQAAA---AKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKM 60

Query: 61  AKVLRYVSLRKRSSSSSSS-----KNGSN-FNRSHSVSDSMEESHRAEAVKDCIKFFNSS 119
           AKVLRYVSLRKRS+SS++S      NGS+ FNRSHSVSDSMEESHRAEAVKDCI+FFNSS
Sbjct: 61  AKVLRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSS 120

BLAST of CaUC04G073050 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 0

Query: 7   SSRRVSFSSDQAVAKPTAFPR----------NRKRLITVFWVFRLPKSARFSPEKFLRRL 66
           +S+RVSFS D    +PT   +          NR+R++   + FRL +S+RFSP + LRRL
Sbjct: 5   TSKRVSFSPD-VNERPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRRL 64

Query: 67  GAKVAKVLRYVSLRKRSSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNS 117
           GAKVA+ LR+VS+R+ S+S   S + SN  RS S+++S+ +SHRAEA++DCI+F NSS+S
Sbjct: 65  GAKVARALRFVSMRRNSNSHKVSSSSSNLARSRSLAESI-DSHRAEAIEDCIEFLNSSSS 122

BLAST of CaUC04G073050 vs. ExPASy TrEMBL
Match: A0A2N9FAM8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12047 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0

Query: 7   SSRRVSFSSDQAVAKPTAFPRN---------RKRLITVFWVFRLPKSARFSPEKFLRRLG 66
           +S+RVSFS D    KPT F ++         RKR+I V W FRLPK + FSP KFL+RL 
Sbjct: 5   ASKRVSFSPD-VNDKPTIFLKHGGGTRVAGGRKRVIGV-WSFRLPKDSEFSPVKFLQRLQ 64

Query: 67  AKVAKVLRYVSLRKRSSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNS 117
           AKV   +R++S+R+R     S K  S+  RSHSVSD M +SHRAEA++DCI+F NSS++
Sbjct: 65  AKVVGAIRFMSIRRR----PSRKVSSSLPRSHSVSDPM-DSHRAEAIEDCIEFLNSSST 116

BLAST of CaUC04G073050 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-08
Identity = 42/127 (33.07%), Postives = 67/127 (52.76%), Query Frame = 0

Query: 9   RRVSFSSDQAVAKPTAFPR--------NRKRLITVFWVFRLPKSARFSPEKFLRRLGAKV 68
           +RVSF+ +        FP+        + +R + +  +      +  +  K ++R+GA+ 
Sbjct: 7   KRVSFNPNPEATDEPIFPKHDGLSSSHHSRRRVVLVGILSFGLRSSPAARKLIQRIGARF 66

Query: 69  AKVLRYVSLRKR-------------SSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDC 115
           AK LR++S R+              SSSSSSS +     RS SV+++  ESHRAEA++DC
Sbjct: 67  AKTLRFISFRRNTTDRRKTSSFLLPSSSSSSSSSAIYMKRSKSVNET--ESHRAEAIEDC 126

BLAST of CaUC04G073050 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-07
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 7   SSRRVSFSSDQAVAKPTAFP------RNRKRLITVFWVFRLPKSARFSPEKFLRRLGAKV 66
           +S+RV FS D        FP        R+R++   + F    S   + ++ LR +G +V
Sbjct: 5   ASKRVRFSPDPEANDELIFPTHSSSRHGRRRVVVGIFSFSFSDSPA-TTKRLLRSIGDRV 64

Query: 67  AKVLRYVS---LRKRSSSSSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNS 117
            K  RY+S   +  +++ SSSS   S+     S S +  ESHRAEA++DCI+F NS +S
Sbjct: 65  GKTFRYISFGRMNTKTTPSSSSNVSSSLYLMKSKSLNGSESHRAEAIEDCIEFLNSCSS 122

BLAST of CaUC04G073050 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 18  AVAKPTAF--PRNRKRLITVFWVFRLPKSARFSPEKFLRRLGAKVAKVLRYVSLRKRSSS 77
           A AK TA   P  +    T     RLP+    +  K ++ LG K AK LR V +RK+  S
Sbjct: 20  ASAKQTAIKGPYGKSPGCTTSCGLRLPRKTEVTAAKLIKHLGCKFAKGLRLVVMRKKKRS 79

Query: 78  SSSSKNGSNFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNS 117
             S  +  +      +     +SHR+EA++DCI+F NSS+S
Sbjct: 80  PPSKVSSFSGRSQPPIIPINNDSHRSEAIEDCIQFINSSSS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022950374.18.5e-4179.69josephin-like protein [Cucurbita moschata][more]
KAG6603596.11.1e-4078.20hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977351.19.4e-4079.53uncharacterized protein LOC111477703 [Cucurbita maxima][more]
KGN54361.15.7e-3780.65hypothetical protein Csa_017994 [Cucumis sativus][more]
XP_023518083.13.7e-3674.36uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GFL94.1e-4179.69josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1[more]
A0A6J1IJN34.6e-4079.53uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703... [more]
A0A0A0L2K72.8e-3780.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1[more]
A0A061EQH22.3e-1547.50Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1[more]
A0A2N9FAM82.5e-1451.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12047 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09032.13.5e-0833.07unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G01225.15.0e-0734.45unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G07300.11.9e-0635.64josephin protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..91
NoneNo IPR availablePANTHERPTHR34355JOSEPHIN-LIKE PROTEINcoord: 1..117
NoneNo IPR availablePANTHERPTHR34355:SF1JOSEPHIN-LIKE PROTEINcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G073050.1CaUC04G073050.1mRNA