CaUC04G072870 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTTTTTATTTTTTTATTTTTATTTTTTTATGTTGTAAGCGTGACGACATGTCGACGAAATGAGTAACACAAGTGAAAATCGCGTGAAAGGATAAAGACGATACTGCCCAGTCTGCACTTACACAATAACAAACTCTCTTACTATTTCTCTTTCCTATATATCAAATTAAACACCAAAATAAAATAAATAAATCCGCTCATCTTTTTACGCTTTCATACACAAACAACATACCAGCTTTAATTCACACCCATTAATTGCCGTACCAAATCCTTCTTCTCTCTATTCTTTCAAAATCCGCGATCGAATCAATCGCCCGATTTGTTTTTTCTTTTCGCGATGGAAGATTATTGCGATCTCCGCCGTGCTATTCTTGACCGACGGCCGAATCGAATAGGCGTTAATGCAGAGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCGGAGACGAAGGAGTTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCGAAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGCAAATGGAAAAATCTCGTCACTCGTTATAAGGTAATCAATGAATTTTCTTTTTAGTGGTGTCATTATTTTAGGGTTTTTGATAACTCTTACCCTTATTATCAAAATATTTGTTCAATTATGATTTTATTTAATTACAAATTTAGTCTGATTTTTGTTTTTTTTTTTTCTTTTTTCTTTTTTTCTCTAAAATTCACAAATTACCAAACACTAACTTGAAATTTTAGAATTTTGACATAAAATTTAAATTTAAATTTTAAAAATTAATTCATTTTTAAAAAATTTGAAATTTTCAAGAATTTACTACTAATACGAAATTGCAGGTTAAGGGATCTAAAAGTTTAAATATTTTTTTTAAAAAAATTTGATAACTAAATAAACACAAATATAAATTACTTACAAATTTTGTCATCAAACTCAACTGTGTTAAAAACTAAAAGTTGAATTACGTGTCAAATGTGAAGGTTACGGCATCAAATCAAACAATTTTCTTTACCATTTTAAATGGATCATCATCGAGAAATTTCATAACGTGTAAAAGGCTTGAATTGTTAGTTTTTAGTTTTCAATTTTTAAAATTTCTGCTTATTTTCTCACCATTTTAATACAATGATGACTTCTTAATAAATTTTTAAAAACTAAAATAAAAATTTTAAATTTATTTTGTTAGTTATCAAAACTTAACTTGAATTTTAAAAACATTAAAACTATATAAGGAAAGGAAAAAAAAAAATCATAAGTAGAATAACGTTGCTTAATTTTCAGAACTTGCATGGAATTTTTTGTTTTATTTTGAAAATTTGGTTTAATATTTTAAATTTATAACAACTGGTATATACTGACTTGGTTGTTTAGAAGCAGGGAAACTAAAAAGAAATCGTGACAAAAGGAGTTTCCAGCCTTGAAGTAATAGAATGTGTGGTGTTATATTAAATTTTGAAAATGAAGTGTACAAGTTAAGTTACTTGTTAAATAATTTCTATATAATAAAACACAAAACTAATAAACTTTATAATATAAATTGATAATTGGCTACTTCAATAATTTGATACTCCATGTTAACGTATCTAAAAACGAAGACATTCCATATTGACAACATATCCCTATATAATAATTGAATTTAATTTATTCAAAACTATCAAGTCAGGGGTGGTGGTTAGTTCGGTTTTGTCGGTTTTAGGGCCAACCAAAAACCAAACCAAACTAATCGATTTTACAAAGAAGGGATCCAAACCAATGTCCAATAAAGAACAAAACCAATGGATTGGTTTTATTTTGATCAGTTTATTATCGGTTTGGTTCTCGGTTTCTGACATTTTTTTCTTTTTCTTTCATTTTTATTTCCACTTTGTTTTGAATCGATCATTTTTTTATAATCTTAAATTAAAATTGAGTGTATTTCTTTTTTTATAAATTGAAATTTGATATTTTTGTTTTTTTTCTTGTTTCTTTTCTAAATTAAAAAATCATACACACTCCATAATAATTGGTCTTTTATCTAAACATCAAATATATATGCACCATAATAATTAAAATACTAAAAAATACCTAATGAAGAGTTTATTTTCAGGGGTATATATATAGCATTGGTTCGGTTTGGTTTTGATTGGTTTTTCTAATAAAAAACTGATCTAAATCCGTACTTTTTGGTTTTCTCTAAATACAAACTAATATGTCCAATTTCATACTAAACCAAACTATCGGATCAATTTGGATTAATTTGAATTTTCGAAATTTCGATCTTTTGTCACACTCCTACTATCTAACTCATTTTTTGAGTTCTTATAACTATAACAAATATATAGTTCTGCTAAATATGAGCCGTATCTTAAATAATTACAAAGAAATTAACTTATATACATCTTTTTTAAAAAAAGAGAGAAGTAAGAAAACGATGATAACTAAAAGACAAAATGTCAATTACCAAACAAAATCACAAGTATATTATTACCATTATTTGTCCTTAAAAGAATATATAGAGATTTGAAAAGTTTATCAAATATGTCCTGACAAGTTAAAGGTTTGAATCTCAGTACCACCCGTCCCATATGGTTAAAACTAAAAAAAATAAAAAACAAGAACACACGGTTTCTGTCTCTTTTAGAGAATAATACACATAAGGATAAAATAAGGAAATGTGTTGTTACAAATAATTTTTGAAGAATAATTCTACATGCCTCCCTCTCTTACTACATAACTTAAAAAATATATAAAAGATTCGATTTTTTAAAAAAATAAAAATTTTCCATGGGCCAACGTCGAGCGTAGGTGCAGTCCGGCTAACACCTAAGTTTCTTTTTCTTGATAATTTTTCTCTTTTCTTCCTTCCTTTCTCTTTTACTATCTGTCAAACCCTTCACATTAATTATATAGGGCTGTGAAACTATGGATCCCAAAGCTCTAAAGCAGCAATTTCCATTTTACGACGACCTTCATGCCATTTTTACTGCAAGGATGCAAAACAACTGGTGGATCGAAGCCGAAGATCGATCGGGAGGCTCCAAACGAAAAACCACCGAGCGATTCTCTAGCGAGGATCAGGACGGTAATAAAGAAGAAAACGACGAAGACGAAGACGAAGCATTCGGGTCAAGTACGAAAAGGAAAAAGGGTACAAAAAAGGGGAGATGGATAAGAGATCAATTAGAACATAAGAGGAAATTGAAAGAAATATTGAAGGGTTTTGTGGAAAGAGAGATGGAAATGGAGAGGCAATGGAGAGAAGCATTTAGGGTTAGAGAGGAAGAGAGAAGGTTAAAAGAGGAAGAATGGAGGATGAAAATGGAAGCCATAGAGAGAGAGAAGATGATGATGGAGATATTATGGAGAGAAAAAGAAGAGAAGAGGAGAGAAAGAGAGGAAGAAAGGGCTGAGAAGAGAGATGCTTTGATCTCAGCTTTATTGAGAAGCCTCACATAATTAAAGATATAAGATTATAAAGGTATGTACTTGTTCAACCTCTCTCATCTCATATTATTATTAATTACTTGTTATTTTTAGCAATTATTTAACCACAAAAAAGGGTGATTAATTAATTCAAACTTGTGAGTTGAATCATTCTTAATGACACTTAAATTTAAAGATGGTTTTTTTAATTAAAATCATATTGATGATCTTCTCTCTCTTTTATCCAGAATTTTATATTCTTAAAGAACATAACGTTACAAAATATGGGGGAAAGGATACAAATCTATCATTCATAAAAAGAGAAATTATAATTTTCATTTTTTTAATTTAATGTTTTATAAAGATATGGTTATGTTTTTTTTTCCCTAAAGTAAAGTTATATATATGTATATGTATTAATTTGTATATGAATGATTAATAGGTAGACCATGCCTTTATCTTAAGTTGATA GTTTTTTTATTTTTTTATTTTTATTTTTTTATGTTGTAAGCGTGACGACATGTCGACGAAATGAGTAACACAAGTGAAAATCGCGTGAAAGGATAAAGACGATACTGCCCAGTCTGCACTTACACAATAACAAACTCTCTTACTATTTCTCTTTCCTATATATCAAATTAAACACCAAAATAAAATAAATAAATCCGCTCATCTTTTTACGCTTTCATACACAAACAACATACCAGCTTTAATTCACACCCATTAATTGCCGTACCAAATCCTTCTTCTCTCTATTCTTTCAAAATCCGCGATCGAATCAATCGCCCGATTTGTTTTTTCTTTTCGCGATGGAAGATTATTGCGATCTCCGCCGTGCTATTCTTGACCGACGGCCGAATCGAATAGGCGTTAATGCAGAGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCGGAGACGAAGGAGTTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCGAAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGCAAATGGAAAAATCTCGTCACTCGTTATAAGGGCTGTGAAACTATGGATCCCAAAGCTCTAAAGCAGCAATTTCCATTTTACGACGACCTTCATGCCATTTTTACTGCAAGGATGCAAAACAACTGGTGGATCGAAGCCGAAGATCGATCGGGAGGCTCCAAACGAAAAACCACCGAGCGATTCTCTAGCGAGGATCAGGACGGTAATAAAGAAGAAAACGACGAAGACGAAGACGAAGCATTCGGGTCAAGTACGAAAAGGAAAAAGGGTACAAAAAAGGGGAGATGGATAAGAGATCAATTAGAACATAAGAGGAAATTGAAAGAAATATTGAAGGGTTTTGTGGAAAGAGAGATGGAAATGGAGAGGCAATGGAGAGAAGCATTTAGGGTTAGAGAGGAAGAGAGAAGGTTAAAAGAGGAAGAATGGAGGATGAAAATGGAAGCCATAGAGAGAGAGAAGATGATGATGGAGATATTATGGAGAGAAAAAGAAGAGAAGAGGAGAGAAAGAGAGGAAGAAAGGGCTGAGAAGAGAGATGCTTTGATCTCAGCTTTATTGAGAAGCCTCACATAATTAAAGATATAAGATTATAAAGGTATGTACTTGTTCAACCTCTCTCATCTCATATTATTATTAATTACTTGTTATTTTTAGCAATTATTTAACCACAAAAAAGGGTGATTAATTAATTCAAACTTGTGAGTTGAATCATTCTTAATGACACTTAAATTTAAAGATGGTTTTTTTAATTAAAATCATATTGATGATCTTCTCTCTCTTTTATCCAGAATTTTATATTCTTAAAGAACATAACGTTACAAAATATGGGGGAAAGGATACAAATCTATCATTCATAAAAAGAGAAATTATAATTTTCATTTTTTTAATTTAATGTTTTATAAAGATATGGTTATGTTTTTTTTTCCCTAAAGTAAAGTTATATATATGTATATGTATTAATTTGTATATGAATGATTAATAGGTAGACCATGCCTTTATCTTAAGTTGATA ATGGAAGATTATTGCGATCTCCGCCGTGCTATTCTTGACCGACGGCCGAATCGAATAGGCGTTAATGCAGAGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCGGAGACGAAGGAGTTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCGAAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGCAAATGGAAAAATCTCGTCACTCGTTATAAGGGCTGTGAAACTATGGATCCCAAAGCTCTAAAGCAGCAATTTCCATTTTACGACGACCTTCATGCCATTTTTACTGCAAGGATGCAAAACAACTGGTGGATCGAAGCCGAAGATCGATCGGGAGGCTCCAAACGAAAAACCACCGAGCGATTCTCTAGCGAGGATCAGGACGGTAATAAAGAAGAAAACGACGAAGACGAAGACGAAGCATTCGGGTCAAGTACGAAAAGGAAAAAGGGTACAAAAAAGGGGAGATGGATAAGAGATCAATTAGAACATAAGAGGAAATTGAAAGAAATATTGAAGGGTTTTGTGGAAAGAGAGATGGAAATGGAGAGGCAATGGAGAGAAGCATTTAGGGTTAGAGAGGAAGAGAGAAGGTTAAAAGAGGAAGAATGGAGGATGAAAATGGAAGCCATAGAGAGAGAGAAGATGATGATGGAGATATTATGGAGAGAAAAAGAAGAGAAGAGGAGAGAAAGAGAGGAAGAAAGGGCTGAGAAGAGAGATGCTTTGATCTCAGCTTTATTGAGAAGCCTCACATAA MEDYCDLRRAILDRRPNRIGVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKGCETMDPKALKQQFPFYDDLHAIFTARMQNNWWIEAEDRSGGSKRKTTERFSSEDQDGNKEENDEDEDEAFGSSTKRKKGTKKGRWIRDQLEHKRKLKEILKGFVEREMEMERQWREAFRVREEERRLKEEEWRMKMEAIEREKMMMEILWREKEEKRREREEERAEKRDALISALLRSLT Homology
BLAST of CaUC04G072870 vs. NCBI nr
Match: XP_038883623.1 (trihelix transcription factor GT-3b-like [Benincasa hispida]) HSP 1 Score: 439.5 bits (1129), Expect = 2.1e-119 Identity = 235/273 (86.08%), Postives = 249/273 (91.21%), Query Frame = 0
BLAST of CaUC04G072870 vs. NCBI nr
Match: XP_011653700.1 (trihelix transcription factor GT-3b [Cucumis sativus] >XP_031739717.1 trihelix transcription factor GT-3b [Cucumis sativus] >XP_031739718.1 trihelix transcription factor GT-3b [Cucumis sativus] >KGN54384.1 hypothetical protein Csa_018084 [Cucumis sativus]) HSP 1 Score: 386.0 bits (990), Expect = 2.8e-103 Identity = 212/275 (77.09%), Postives = 235/275 (85.45%), Query Frame = 0
BLAST of CaUC04G072870 vs. NCBI nr
Match: XP_008464203.1 (PREDICTED: trihelix transcription factor GT-3b isoform X2 [Cucumis melo] >KAA0059080.1 trihelix transcription factor GT-3b isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 369.4 bits (947), Expect = 2.7e-98 Identity = 208/278 (74.82%), Postives = 233/278 (83.81%), Query Frame = 0
BLAST of CaUC04G072870 vs. NCBI nr
Match: TYK29247.1 (trihelix transcription factor GT-3b isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 368.2 bits (944), Expect = 6.0e-98 Identity = 207/278 (74.46%), Postives = 233/278 (83.81%), Query Frame = 0
BLAST of CaUC04G072870 vs. NCBI nr
Match: XP_008464201.1 (PREDICTED: trihelix transcription factor GT-3b isoform X1 [Cucumis melo] >XP_008464202.1 PREDICTED: trihelix transcription factor GT-3b isoform X1 [Cucumis melo]) HSP 1 Score: 363.2 bits (931), Expect = 1.9e-96 Identity = 208/283 (73.50%), Postives = 233/283 (82.33%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy Swiss-Prot
Match: O80450 (Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 5.9e-56 Identity = 122/249 (49.00%), Postives = 169/249 (67.87%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy Swiss-Prot
Match: Q9SDW0 (Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 3.3e-51 Identity = 124/272 (45.59%), Postives = 175/272 (64.34%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy Swiss-Prot
Match: Q9LU92 (Trihelix transcription factor GT-4 OS=Arabidopsis thaliana OX=3702 GN=GT-4 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.9e-10 Identity = 29/95 (30.53%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy Swiss-Prot
Match: B2KFW1 (Zinc finger and SCAN domain-containing protein 20 OS=Mus musculus OX=10090 GN=Zscan20 PE=2 SV=2) HSP 1 Score: 50.8 bits (120), Expect = 2.8e-05 Identity = 38/136 (27.94%), Postives = 61/136 (44.85%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy TrEMBL
Match: A0A0A0KZY4 (Myb-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G310210 PE=4 SV=1) HSP 1 Score: 386.0 bits (990), Expect = 1.3e-103 Identity = 212/275 (77.09%), Postives = 235/275 (85.45%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy TrEMBL
Match: A0A5A7UVF8 (Trihelix transcription factor GT-3b isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold612G00040 PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 1.3e-98 Identity = 208/278 (74.82%), Postives = 233/278 (83.81%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy TrEMBL
Match: A0A1S3CKY0 (trihelix transcription factor GT-3b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502137 PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 1.3e-98 Identity = 208/278 (74.82%), Postives = 233/278 (83.81%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy TrEMBL
Match: A0A5D3DZE6 (Trihelix transcription factor GT-3b isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00080 PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 2.9e-98 Identity = 207/278 (74.46%), Postives = 233/278 (83.81%), Query Frame = 0
BLAST of CaUC04G072870 vs. ExPASy TrEMBL
Match: A0A1S3CKZ2 (trihelix transcription factor GT-3b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502137 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 9.3e-97 Identity = 208/283 (73.50%), Postives = 233/283 (82.33%), Query Frame = 0
BLAST of CaUC04G072870 vs. TAIR 10
Match: AT2G38250.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 219.2 bits (557), Expect = 4.2e-57 Identity = 122/249 (49.00%), Postives = 169/249 (67.87%), Query Frame = 0
BLAST of CaUC04G072870 vs. TAIR 10
Match: AT5G01380.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 203.4 bits (516), Expect = 2.4e-52 Identity = 124/272 (45.59%), Postives = 175/272 (64.34%), Query Frame = 0
BLAST of CaUC04G072870 vs. TAIR 10
Match: AT3G25990.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 66.6 bits (161), Expect = 3.5e-11 Identity = 29/95 (30.53%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of CaUC04G072870 vs. TAIR 10
Match: AT1G13450.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09 Identity = 28/92 (30.43%), Postives = 46/92 (50.00%), Query Frame = 0
BLAST of CaUC04G072870 vs. TAIR 10
Match: AT1G13450.2 (Homeodomain-like superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09 Identity = 28/92 (30.43%), Postives = 46/92 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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