CaUC04G072390 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAGGTTTGTTTGTGGAAAGGCTTGTTTGTGGAAAGGCTCAAATGTTATATTTTTTGAACCACTCCAAAAGGTCGCATACCTATAGAAATAATTGTCTTCATTTATATAAGACAAATTTCTCCCTTCCATAACTATTCCTAAACTTTGTTTTCACTCCTAACAATCCTTTCCACAAACATGTTTTTCCTCTTACACTTGTAGGTTCTGTTTTCTTTCCACCCATATATTATATAATTTTGTGATTGCATAAATATGTTGTCAAAATTAGAATAGTTTTACATGCTAACAAAACGTTTTTCAACCAATATGCTATTTCTTACTAACAAATTGAGGATCGTTTTGTTAGCATAGTTATTTTTTGTAATTCCTATTTTAGGAATAAAATAGTATTTCATTTGGTTGAATCTATGAAGTAGGCAAAATGTTAACCATACCATTCAAACAGAGAGATAAACATATGCAATAAATAGTACAACCACCTAATATTAGATATATAGTTATTTGAATATATAAACATCCTTACCTTTTGAAGTCTTTTCAATTGTAAGTGATTCATGTTTTAAGTTTTGTATTAGATTTGTTATCAATGATGATCATGTCGAAGGGAATCACGATTGTTTTTATTTGGAGTTCTCTTGGTTAGCTTTGACATGGCTGAGATAACAAATACAATGAACTATGTTGGTTATAAACTCTTAAAAGGAAATGTTAGTCTTGGATGTAGCTCAAAGTATCCTGAACTTTGTAAATTAACTCCTTCAAATTCATATGAAAGAGGTTGCAATGCGATCAATCGTTGCAGGAGAAAAAATGATATTCTAAATGGTGTAGAAGAAATTGAAGGACATAATGCATCCATTAGCCCAGCAATGAGCCCTAATGCATAA ATGGATAGCTTTGACATGGCTGAGATAACAAATACAATGAACTATGTTGGTTATAAACTCTTAAAAGGAAATGTTAGTCTTGGATGTAGCTCAAAGTATCCTGAACTTTGTAAATTAACTCCTTCAAATTCATATGAAAGAGGTTGCAATGCGATCAATCGTTGCAGGAGAAAAAATGATATTCTAAATGGTGTAGAAGAAATTGAAGGACATAATGCATCCATTAGCCCAGCAATGAGCCCTAATGCATAA ATGGATAGCTTTGACATGGCTGAGATAACAAATACAATGAACTATGTTGGTTATAAACTCTTAAAAGGAAATGTTAGTCTTGGATGTAGCTCAAAGTATCCTGAACTTTGTAAATTAACTCCTTCAAATTCATATGAAAGAGGTTGCAATGCGATCAATCGTTGCAGGAGAAAAAATGATATTCTAAATGGTGTAGAAGAAATTGAAGGACATAATGCATCCATTAGCCCAGCAATGAGCCCTAATGCATAA MDSFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDILNGVEEIEGHNASISPAMSPNA Homology
BLAST of CaUC04G072390 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus]) HSP 1 Score: 87.0 bits (214), Expect = 8.1e-14 Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0
BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia]) HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0
BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata]) HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10 Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 0
BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_022988993.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima]) HSP 1 Score: 75.1 bits (183), Expect = 3.2e-10 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 74.7 bits (182), Expect = 4.2e-10 Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0
BLAST of CaUC04G072390 vs. ExPASy Swiss-Prot
Match: A8MQM2 (Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 3.2e-05 Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0
BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 3.9e-14 Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0
BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0
BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11 Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 0
BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1JNY3 (auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111486187 PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09 Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0
BLAST of CaUC04G072390 vs. TAIR 10
Match: AT1G60625.1 (RALF-like 6 ) HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06 Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0
BLAST of CaUC04G072390 vs. TAIR 10
Match: AT1G60815.1 (RALF-like 7 ) HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04 Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 0
BLAST of CaUC04G072390 vs. TAIR 10
Match: AT1G61566.1 (ralf-like 9 ) HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04 Identity = 17/43 (39.53%), Postives = 26/43 (60.47%), Query Frame = 0
BLAST of CaUC04G072390 vs. TAIR 10
Match: AT2G22055.1 (RALF-like 15 ) HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04 Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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