CaUC04G072390 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G072390
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionprotein RALF-like 9
LocationCiama_Chr04: 21115686 .. 21116577 (+)
RNA-Seq ExpressionCaUC04G072390
SyntenyCaUC04G072390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGTTTGTTTGTGGAAAGGCTTGTTTGTGGAAAGGCTCAAATGTTATATTTTTTGAACCACTCCAAAAGGTCGCATACCTATAGAAATAATTGTCTTCATTTATATAAGACAAATTTCTCCCTTCCATAACTATTCCTAAACTTTGTTTTCACTCCTAACAATCCTTTCCACAAACATGTTTTTCCTCTTACACTTGTAGGTTCTGTTTTCTTTCCACCCATATATTATATAATTTTGTGATTGCATAAATATGTTGTCAAAATTAGAATAGTTTTACATGCTAACAAAACGTTTTTCAACCAATATGCTATTTCTTACTAACAAATTGAGGATCGTTTTGTTAGCATAGTTATTTTTTGTAATTCCTATTTTAGGAATAAAATAGTATTTCATTTGGTTGAATCTATGAAGTAGGCAAAATGTTAACCATACCATTCAAACAGAGAGATAAACATATGCAATAAATAGTACAACCACCTAATATTAGATATATAGTTATTTGAATATATAAACATCCTTACCTTTTGAAGTCTTTTCAATTGTAAGTGATTCATGTTTTAAGTTTTGTATTAGATTTGTTATCAATGATGATCATGTCGAAGGGAATCACGATTGTTTTTATTTGGAGTTCTCTTGGTTAGCTTTGACATGGCTGAGATAACAAATACAATGAACTATGTTGGTTATAAACTCTTAAAAGGAAATGTTAGTCTTGGATGTAGCTCAAAGTATCCTGAACTTTGTAAATTAACTCCTTCAAATTCATATGAAAGAGGTTGCAATGCGATCAATCGTTGCAGGAGAAAAAATGATATTCTAAATGGTGTAGAAGAAATTGAAGGACATAATGCATCCATTAGCCCAGCAATGAGCCCTAATGCATAA

mRNA sequence

ATGGATAGCTTTGACATGGCTGAGATAACAAATACAATGAACTATGTTGGTTATAAACTCTTAAAAGGAAATGTTAGTCTTGGATGTAGCTCAAAGTATCCTGAACTTTGTAAATTAACTCCTTCAAATTCATATGAAAGAGGTTGCAATGCGATCAATCGTTGCAGGAGAAAAAATGATATTCTAAATGGTGTAGAAGAAATTGAAGGACATAATGCATCCATTAGCCCAGCAATGAGCCCTAATGCATAA

Coding sequence (CDS)

ATGGATAGCTTTGACATGGCTGAGATAACAAATACAATGAACTATGTTGGTTATAAACTCTTAAAAGGAAATGTTAGTCTTGGATGTAGCTCAAAGTATCCTGAACTTTGTAAATTAACTCCTTCAAATTCATATGAAAGAGGTTGCAATGCGATCAATCGTTGCAGGAGAAAAAATGATATTCTAAATGGTGTAGAAGAAATTGAAGGACATAATGCATCCATTAGCCCAGCAATGAGCCCTAATGCATAA

Protein sequence

MDSFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDILNGVEEIEGHNASISPAMSPNA
Homology
BLAST of CaUC04G072390 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 8.1e-14
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 3  SFDMAEITNTMNYVGY-KLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDI 62
          SFDM  ITN   ++ Y  ++ G+VS GCS  +PELC++  +N Y+RGCN I+RCR  NDI
Sbjct: 18 SFDMIMITNAKKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDI 77

Query: 63 LNGVEE-IEGHNASISPAMSPN 83
          ++  EE IEG +ASISP++SPN
Sbjct: 78 IDAEEEHIEG-DASISPSISPN 98

BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 3  SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDIL 62
          SF M EITN + Y+ Y  LK +VS GCS K+P LCKL  +NSY+RGC+AINRCRR +D +
Sbjct: 18 SFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCSAINRCRR-DDYI 77

Query: 63 NGVEEIEG 71
          +  E+I+G
Sbjct: 78 DSEEKIKG 84

BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 3   SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCR------ 62
           S +M EITN  +Y+ Y  LK N  L CS  +P+LCK TP+N Y+RGCN I+RCR      
Sbjct: 16  SINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCNPIDRCRGAESDD 75

Query: 63  ----RKNDILNGVEE------IEGHNASISPAMSPN 83
                + DI N  EE       EG++ +  PA+SPN
Sbjct: 76  IIDNDEEDITNNDEEDDIVDNDEGYDNASCPAISPN 111

BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_022988993.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 75.1 bits (183), Expect = 3.2e-10
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 3   SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDIL 62
           S  +A+IT T N++ Y  +K +VS GCS K+P LCK   +NSY+RGCNAIN+C R +DI+
Sbjct: 214 SSGVAQIT-TKNFINYDAIKADVSPGCSPKHPNLCKTHEANSYQRGCNAINQC-RGDDII 273

Query: 63  NGVEEIEGHNASI 76
           N VE+I+  ++ I
Sbjct: 274 NAVEKIDVKHSDI 284

BLAST of CaUC04G072390 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-10
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 3   SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCR------ 62
           S +M EITN  +Y+ Y  LK N  L CS  +P+LCK  P+N Y+RGCN I+RCR      
Sbjct: 11  SINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKKIPANPYQRGCNPIDRCRGAESDD 70

Query: 63  -----RKNDILNGVEE------IEGHNASISPAMSPN 83
                 ++DI N  EE       EG++ +  PA+SPN
Sbjct: 71  IIDNDEEDDITNNDEEDDIIDNDEGYDDASCPAISPN 107

BLAST of CaUC04G072390 vs. ExPASy Swiss-Prot
Match: A8MQM2 (Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-05
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 15 YVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRK 59
          Y+ Y  +KG++  GCSSK P+ C   P+ SY RGC    RC+R+
Sbjct: 32 YINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEISTRCQRQ 75

BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-14
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 3  SFDMAEITNTMNYVGY-KLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDI 62
          SFDM  ITN   ++ Y  ++ G+VS GCS  +PELC++  +N Y+RGCN I+RCR  NDI
Sbjct: 18 SFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDI 77

Query: 63 LNGVEE-IEGHNASISPAMSPN 83
          ++  EE IEG +ASISP++SPN
Sbjct: 78 IDAEEEHIEG-DASISPSISPN 98

BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 3  SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDIL 62
          SF M EITN + Y+ Y  LK +VS GCS K+P LCKL  +NSY+RGC+AINRCRR +D +
Sbjct: 18 SFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCSAINRCRR-DDYI 77

Query: 63 NGVEEIEG 71
          +  E+I+G
Sbjct: 78 DSEEKIKG 84

BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 3   SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCR------ 62
           S +M EITN  +Y+ Y  LK N  L CS  +P+LCK TP+N Y+RGCN I+RCR      
Sbjct: 16  SINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCNPIDRCRGAESDD 75

Query: 63  ----RKNDILNGVEE------IEGHNASISPAMSPN 83
                + DI N  EE       EG++ +  PA+SPN
Sbjct: 76  IIDNDEEDITNNDEEDDIVDNDEGYDNASCPAISPN 111

BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1JNY3 (auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111486187 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 3   SFDMAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDIL 62
           S  +A+IT T N++ Y  +K +VS GCS K+P LCK   +NSY+RGCNAIN+C R +DI+
Sbjct: 214 SSGVAQIT-TKNFINYDAIKADVSPGCSPKHPNLCKTHEANSYQRGCNAINQC-RGDDII 273

Query: 63  NGVEEIEGHNASI 76
           N VE+I+  ++ I
Sbjct: 274 NAVEKIDVKHSDI 284

BLAST of CaUC04G072390 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0

Query: 6  MAEITNTMNYVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDILNGV 65
          M +ITN   ++ Y  L+G+VS GCS  +PELCKL  +N Y+RGC +I+RCR  +DI++  
Sbjct: 21 MIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCTSIDRCRGGSDIIDDA 80

Query: 66 EEI 69
          E I
Sbjct: 81 EMI 83

BLAST of CaUC04G072390 vs. TAIR 10
Match: AT1G60625.1 (RALF-like 6 )

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 15 YVGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRK 59
          Y+ Y  +KG++  GCSSK P+ C   P+ SY RGC    RC+R+
Sbjct: 32 YINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEISTRCQRQ 75

BLAST of CaUC04G072390 vs. TAIR 10
Match: AT1G60815.1 (RALF-like 7 )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 0

Query: 16 VGYKLLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRRKNDILNG 65
          + YK L  +   GC+SK P+ C   P+N+Y RGC    RC R+    +G
Sbjct: 33 INYKDLIKDTIPGCTSKNPKECVKVPANTYHRGCEISTRCHREQHSSSG 81

BLAST of CaUC04G072390 vs. TAIR 10
Match: AT1G61566.1 (ralf-like 9 )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 17/43 (39.53%), Postives = 26/43 (60.47%), Query Frame = 0

Query: 15 YVGYKLL-KGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCR 57
          Y+ Y  + +G+ ++ C   +P  CK   +N Y+RGC  INRCR
Sbjct: 31 YITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCR 73

BLAST of CaUC04G072390 vs. TAIR 10
Match: AT2G22055.1 (RALF-like 15 )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = 0

Query: 15 YVGYK-LLKGNVSLGCSSKYPELCKLTPSNSYERGCNAINRCRR 58
          Y+ Y+ +  G+ ++ C   +P  CK   +N Y RGC  I RCRR
Sbjct: 31 YISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGTIERCRR 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650705.18.1e-1453.66hypothetical protein Csa_010421 [Cucumis sativus][more]
XP_022136918.12.6e-1257.35uncharacterized protein LOC111008495 [Momordica charantia][more]
XP_022961577.11.1e-1043.75protein RALF-like 9 [Cucurbita moschata][more]
XP_022988993.13.2e-1050.68auxin-induced in root cultures protein 12-like [Cucurbita maxima][more]
XP_023546462.14.2e-1042.27protein RALF-like 9 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A8MQM23.2e-0545.45Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L8B13.9e-1453.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1[more]
A0A6J1C8U51.3e-1257.35uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1HAJ85.3e-1143.75protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1[more]
A0A6J1JNY31.5e-1050.68auxin-induced in root cultures protein 12-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1DYH75.0e-0949.21uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
AT1G60625.12.3e-0645.45RALF-like 6 [more]
AT1G60815.11.6e-0438.78RALF-like 7 [more]
AT1G61566.12.1e-0439.53ralf-like 9 [more]
AT2G22055.13.6e-0438.64RALF-like 15 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 11..57
e-value: 4.9E-8
score: 33.8
NoneNo IPR availablePANTHERPTHR34270:SF10SUBFAMILY NOT NAMEDcoord: 3..75
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 3..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G072390.1CaUC04G072390.1mRNA