CaUC04G072040 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G072040
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Location	Ciama_Chr04: 20542207 .. 20542545 (-)
RNA-Seq Expression	CaUC04G072040
Synteny	CaUC04G072040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGGTAATTTACTTTGTACTGCTTTTGATTTTAGCGTTTTCCCCTTTTCTTTGCTCAATGGATCTCCTTTCTCCGAGTTCCGATCAACGATCTCTGGAATTAGTTTTCGATTTTGATTTCTGTTGTTCGTCGTTTGTGCAGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

mRNA sequence

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGGTAATTTACTTTGTACTGCTTTTGATTTTAGCGTTTTCCCCTTTTCTTTGCTCAATGGATCTCCTTTCTCCGAGTTCCGATCAACGATCTCTGGAATTAGTTTTCGATTTTGATTTCTGTTGTTCGTCGTTTGTGCAGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

Coding sequence (CDS)

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGGTAATTTACTTTGTACTGCTTTTGATTTTAGCGTTTTCCCCTTTTCTTTGCTCAATGGATCTCCTTTCTCCGAGTTCCGATCAACGATCTCTGGAATTAGTTTTCGATTTTGATTTCTGTTGTTCGTCGTTTGTGCAGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

Protein sequence

MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPSSDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS

Homology

[Close]

BLAST of CaUC04G072040 vs. NCBI nr
Match: XP_022950918.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata] >XP_022950920.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata] >XP_023543068.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita pepo subsp. pepo] >XP_023543069.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 64/112 (57.14%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 1   MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSP 60
           MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGR                        
Sbjct: 1   MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGR------------------------ 60

Query: 61  SSDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                 PKHIGNDMWDVAMERRDKKLVEN+SA SHS
Sbjct: 61  ----------------------PKHIGNDMWDVAMERRDKKLVENVSAGSHS 66

[Close]

BLAST of CaUC04G072040 vs. NCBI nr
Match: KAG7033699.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 64/112 (57.14%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 1   MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSP 60
           MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGR                        
Sbjct: 36  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGR------------------------ 95

Query: 61  SSDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                 PKHIGNDMWDVAMERRDKKLVEN+SA SHS
Sbjct: 96  ----------------------PKHIGNDMWDVAMERRDKKLVENVSAGSHS 101

[Close]

BLAST of CaUC04G072040 vs. NCBI nr
Match: XP_038881013.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 63/111 (56.76%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 2   GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPS 61
           GWRW+EAALPLGIIAGMLCIMGNAQYHIHKAAHGR                         
Sbjct: 3   GWRWMEAALPLGIIAGMLCIMGNAQYHIHKAAHGR------------------------- 62

Query: 62  SDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                PKHIGNDMWDVAMERRDKKLVENLSA SHS
Sbjct: 63  ---------------------PKHIGNDMWDVAMERRDKKLVENLSAASHS 67

[Close]

BLAST of CaUC04G072040 vs. NCBI nr
Match: XP_008463294.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis melo] >XP_008463295.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis melo] >XP_008463296.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis melo] >TYK06216.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 63/111 (56.76%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 2   GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPS 61
           GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGR                         
Sbjct: 3   GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGR------------------------- 62

Query: 62  SDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                PKHIGNDMWDVAMERRDKKLVENLSATSHS
Sbjct: 63  ---------------------PKHIGNDMWDVAMERRDKKLVENLSATSHS 67

[Close]

BLAST of CaUC04G072040 vs. NCBI nr
Match: XP_004142669.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis sativus] >XP_031740619.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis sativus] >KGN54471.1 hypothetical protein Csa_012404 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 9.9e-23
Identity = 62/111 (55.86%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 2   GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPS 61
           GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGR                         
Sbjct: 3   GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGR------------------------- 62

Query: 62  SDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                PKHIGNDMWDVAMERRDKKLVENLSA SHS
Sbjct: 63  ---------------------PKHIGNDMWDVAMERRDKKLVENLSAASHS 67

[Close]

BLAST of CaUC04G072040 vs. ExPASy Swiss-Prot
Match: Q9C9Z5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At3g08610 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-16
Identity = 48/106 (45.28%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 5   WLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPSSDQ 64
           WLEA LPLGII GMLCIMGN+QY+IHKA HGR                            
Sbjct: 5   WLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGR---------------------------- 64

Query: 65  RSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATS 111
                             PKHIG+D WDVAMERRDKK+VE  +A S
Sbjct: 65  ------------------PKHIGHDEWDVAMERRDKKVVEKAAAPS 64

[Close]

BLAST of CaUC04G072040 vs. ExPASy TrEMBL
Match: A0A6J1GH44 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111453870 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.4e-24
Identity = 64/112 (57.14%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 1   MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSP 60
           MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGR                        
Sbjct: 1   MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGR------------------------ 60

Query: 61  SSDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                 PKHIGNDMWDVAMERRDKKLVEN+SA SHS
Sbjct: 61  ----------------------PKHIGNDMWDVAMERRDKKLVENVSAGSHS 66

[Close]

BLAST of CaUC04G072040 vs. ExPASy TrEMBL
Match: A0A1S3CIY2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501486 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 63/111 (56.76%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 2   GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPS 61
           GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGR                         
Sbjct: 3   GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGR------------------------- 62

Query: 62  SDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                PKHIGNDMWDVAMERRDKKLVENLSATSHS
Sbjct: 63  ---------------------PKHIGNDMWDVAMERRDKKLVENLSATSHS 67

[Close]

BLAST of CaUC04G072040 vs. ExPASy TrEMBL
Match: A0A5D3C7B6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00800 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 63/111 (56.76%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 2   GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPS 61
           GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGR                         
Sbjct: 3   GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGR------------------------- 62

Query: 62  SDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                PKHIGNDMWDVAMERRDKKLVENLSATSHS
Sbjct: 63  ---------------------PKHIGNDMWDVAMERRDKKLVENLSATSHS 67

[Close]

BLAST of CaUC04G072040 vs. ExPASy TrEMBL
Match: A0A0A0L2Y7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_4G337280 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.8e-23
Identity = 62/111 (55.86%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 2   GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPS 61
           GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGR                         
Sbjct: 3   GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGR------------------------- 62

Query: 62  SDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSHS 113
                                PKHIGNDMWDVAMERRDKKLVENLSA SHS
Sbjct: 63  ---------------------PKHIGNDMWDVAMERRDKKLVENLSAASHS 67

[Close]

BLAST of CaUC04G072040 vs. ExPASy TrEMBL
Match: A0A6J1HU02 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111466140 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 61/111 (54.95%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 1   MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSP 60
           M WRW+EAALPLGIIAGMLCIMGNAQYHIHKAAHGR                        
Sbjct: 1   MAWRWMEAALPLGIIAGMLCIMGNAQYHIHKAAHGR------------------------ 60

Query: 61  SSDQRSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATSH 112
                                 PKHIGNDMWDVAMERRDKKLVEN SA SH
Sbjct: 61  ----------------------PKHIGNDMWDVAMERRDKKLVENFSAASH 65

[Close]

BLAST of CaUC04G072040 vs. TAIR 10
Match: AT3G08610.1 (unknown protein; Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 48/106 (45.28%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 5   WLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRVIYFVLLLILAFSPFLCSMDLLSPSSDQ 64
           WLEA LPLGII GMLCIMGN+QY+IHKA HGR                            
Sbjct: 5   WLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGR---------------------------- 64

Query: 65  RSLELVFDFDFCCSSFVQPKHIGNDMWDVAMERRDKKLVENLSATS 111
                             PKHIG+D WDVAMERRDKK+VE  +A S
Sbjct: 65  ------------------PKHIGHDEWDVAMERRDKKVVEKAAAPS 64

The following BLAST results are available for this feature:

BLAST of CaUC04G072040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950918.1	1.5e-23	57.14	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata...	[more]
KAG7033699.1	1.5e-23	57.14	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1, partial [Cucurbita...	[more]
XP_038881013.1	2.6e-23	56.76	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Benincasa hispida]	[more]
XP_008463294.1	2.6e-23	56.76	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis...	[more]
XP_004142669.1	9.9e-23	55.86	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis sativus] >...	[more]

BLAST of CaUC04G072040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9Z5	3.2e-16	45.28	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thal...	[more]

BLAST of CaUC04G072040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GH44	7.4e-24	57.14	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita moscha...	[more]
A0A1S3CIY2	1.3e-23	56.76	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo OX=...	[more]
A0A5D3C7B6	1.3e-23	56.76	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo var...	[more]
A0A0A0L2Y7	4.8e-23	55.86	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis sativus ...	[more]
A0A6J1HU02	1.4e-22	54.95	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita maxima...	[more]

BLAST of CaUC04G072040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08610.1	2.3e-17	45.28	unknown protein; Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR17098:SF3	BNAC05G43940D PROTEIN	coord: 82..110
None	No IPR available	PANTHER	PTHR17098:SF3	BNAC05G43940D PROTEIN	coord: 2..36
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PANTHER	PTHR17098	NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNIT	coord: 2..36 coord: 82..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G072040.1	CaUC04G072040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion